mRNA_M-pyrifera_M_contig113256.2768.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A7C6RYE5_9GAMM (SirB2 family protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A7C6RYE5_9GAMM) HSP 1 Score: 131 bits (330), Expect = 3.780e-37 Identity = 71/120 (59.17%), Postives = 85/120 (70.83%), Query Frame = 1
Query: 1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPFL 360
K LH+T+V+LS GLF +R AW L R W RI+PHVIDTVLLASAI L + + QYPFVHGWLTAKVLALA YIV GS ALKR ++ R A A+A YI++VA+TH+P FL
Sbjct: 6 KHLHITTVILSFGLFALRGAWMLTDSPRLRRRWARIVPHVIDTVLLASAIGLAVVLRQYPFVHGWLTAKVLALALYIVLGSVALKRGSTKPIRATAWIAAMAVFGYIVSVAVTHSPLGFL 125
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A6N6TCG8_9GAMM (SirB2 family protein n=1 Tax=Candidatus Contendobacter sp. TaxID=2651161 RepID=A0A6N6TCG8_9GAMM) HSP 1 Score: 128 bits (321), Expect = 9.340e-36 Identity = 70/122 (57.38%), Postives = 85/122 (69.67%), Query Frame = 1
Query: 1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPFLPG 366
K LH+T+VVLS LF +R W L+R WVRI+PH++DTVLLASAI LTL + QYPFV GWLTAK+LAL AYI+ GS ALKR ++ R A ALA YI++VALT +P FL G
Sbjct: 8 KHLHLTAVVLSFALFALRGLWMLADSPQLQRRWVRIVPHLVDTVLLASAIGLTLILQQYPFVDGWLTAKILALIAYIILGSVALKRGPTKPIRAAAGAAALAMFGYIVSVALTRHPLGFLAG 129
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A2G6JAM6_NEPCE (Regulator SirB n=1 Tax=Neptuniibacter caesariensis TaxID=207954 RepID=A0A2G6JAM6_NEPCE) HSP 1 Score: 124 bits (310), Expect = 3.770e-34 Identity = 63/115 (54.78%), Postives = 87/115 (75.65%), Query Frame = 1
Query: 1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHN 345
K H+T V LSL LF +R WS APA+LE+ WV+++PH+IDT+LLASAI LT+ + QYPF WLTAKVLAL AYI G+FA+KR ++R+G+ +A ++L YI++VA+TH+
Sbjct: 6 KHTHLTCVALSLCLFLLRGYWSLFAPAYLEQRWVKVVPHIIDTLLLASAITLTVLLQQYPFAAHWLTAKVLALLAYIGCGTFAIKRCKTRQGKVIALILSLLCFAYIVSVAVTHS 120
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A106BKU7_THIDE (Invasion gene expression up-regulator SirB n=1 Tax=Thiobacillus denitrificans TaxID=36861 RepID=A0A106BKU7_THIDE) HSP 1 Score: 123 bits (309), Expect = 5.680e-34 Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 1
Query: 1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPF 357
K LH+ ++ LSL LF +R W L+ WVRI+PH+IDT+LLAS I L + I QYP VHGWLTAKVLAL AYIV G+ ALKR ++R R A F AL Y++AVA+TH+P PF
Sbjct: 7 KNLHLATIALSLALFVLRGVWMMADSPRLQARWVRIVPHLIDTLLLASGIGLAVLIQQYPLVHGWLTAKVLALIAYIVLGTLALKRGKTRGQRIAAWFTALLVFAYMVAVAITHDPFPF 125
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A536XES5_9PROT (Regulator SirB n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XES5_9PROT) HSP 1 Score: 122 bits (307), Expect = 1.290e-33 Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query: 1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPA 351
K +HV S VLSL LF +R AW V+PA L + WV+++PHV+DTVLL SAIAL + I YP H WLTAKV L AY+V GS ALKR R+R R A F ALA YI++VA+T +PA
Sbjct: 9 KMVHVGSAVLSLALFSVRGAWMMVSPARLGQPWVKVVPHVVDTVLLGSAIALAIAIGNYPGTHAWLTAKVAGLVAYVVLGSIALKRGRTRAIRVAAFFAALAVFAYIVSVAVTKSPA 125
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A317MXU3_9GAMM (Putative membrane protein SirB2 n=1 Tax=Plasticicumulans acidivorans TaxID=886464 RepID=A0A317MXU3_9GAMM) HSP 1 Score: 122 bits (306), Expect = 1.940e-33 Identity = 70/122 (57.38%), Postives = 81/122 (66.39%), Query Frame = 1
Query: 1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPFLPG 366
+ LH+ +V LS GLF +R W + L+ WVR+LPHVIDTVLL SAIALTL I QYP HGWLTAKVLAL AYI GS ALKR SRR R A A+ YI+ VAL H+PA + G
Sbjct: 12 RHLHIGAVTLSGGLFLLRGMWMLLDSPQLQARWVRVLPHVIDTVLLLSAIALTLIIQQYPLTHGWLTAKVLALLAYIGLGSVALKRGGSRRTRIAAFMAAVGCFAYIVGVALHHDPASWFAG 133
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A430KNK0_9GAMM (Uncharacterized protein n=2 Tax=Amphritea TaxID=515417 RepID=A0A430KNK0_9GAMM) HSP 1 Score: 122 bits (305), Expect = 1.980e-33 Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 1
Query: 1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHN 345
K H+T VLS+ LF +R W PA L+R WV+I+PH+IDT+LL SAIALT+TI+QYP HGWLTAK++AL AYI G+ ALKR ++R R +A +ALA V YI+ VAL H+
Sbjct: 6 KHTHITFAVLSILLFSLRGFWMLTTPAKLQRRWVKIVPHIIDTLLLISAIALTVTINQYPLTHGWLTAKLIALVAYIGLGTIALKRGKTRNIRILAFIMALACVVYIVWVALRHS 120
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A3C1SQQ0_9GAMM (Regulator SirB n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3C1SQQ0_9GAMM) HSP 1 Score: 122 bits (305), Expect = 2.300e-33 Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = 1
Query: 1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPA 351
K LH+T+V LS LF +R W + L R WVR++PHVIDTVLLASA+ L +HQYPFVHGWLTAKV AL YIV GS ALKR S+ R A ALA YI++VAL+ +PA
Sbjct: 6 KHLHLTAVALSFTLFVLRGVWMLIDSPRLRRPWVRVVPHVIDTVLLASALGLIAILHQYPFVHGWLTAKVAALVVYIVLGSIALKRGSSKPVRAAAWIAALAVFGYIVSVALSRSPA 122
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: UPI001664F7D9 (SirB family protein n=2 Tax=Marinobacterium nitratireducens TaxID=518897 RepID=UPI001664F7D9) HSP 1 Score: 121 bits (304), Expect = 3.080e-33 Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 1
Query: 1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPF 357
K LH+T V LS+ LF +R W + L + WVRI+PH+IDT+LL SA+ L LTI QYPFV+GWLTAK+LAL AYI G ALKR RS+ R +A F ALA+ YI VA++H+P P+
Sbjct: 6 KHLHLTMVTLSICLFMLRGYWMMLGSRLLNQRWVRIIPHLIDTLLLLSAVGLVLTIQQYPFVNGWLTAKLLALVAYIALGMIALKRGRSKGTRTLAFFAALATFGYIAWVAVSHDPTPW 124
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A7Y7D7U5_9GAMM (SirB2 family protein n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A7Y7D7U5_9GAMM) HSP 1 Score: 120 bits (300), Expect = 1.250e-32 Identity = 64/119 (53.78%), Postives = 84/119 (70.59%), Query Frame = 1
Query: 1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPF 357
K LH+T++ LS+ LF +R W + L R WVRI+PH++DTVLL SAI L LT+ QYPFV+GWLTAK+LAL YI G ALK RS+ R +A F ALA+ YI +VA++H+P P+
Sbjct: 6 KHLHLTAITLSICLFMLRGYWMMLGSRLLSRRWVRIIPHLVDTVLLLSAIGLMLTLQQYPFVNGWLTAKLLALVVYIAFGMIALKSGRSKGTRLLAFFAALATFGYIASVAVSHDPTPW 124 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig113256.2768.1 >prot_M-pyrifera_M_contig113256.2768.1 ID=prot_M-pyrifera_M_contig113256.2768.1|Name=mRNA_M-pyrifera_M_contig113256.2768.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIback to top mRNA from alignment at M-pyrifera_M_contig113256:210..578- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig113256.2768.1 ID=mRNA_M-pyrifera_M_contig113256.2768.1|Name=mRNA_M-pyrifera_M_contig113256.2768.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig113256:210..578- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig113256:210..578- >mRNA_M-pyrifera_M_contig113256.2768.1 ID=mRNA_M-pyrifera_M_contig113256.2768.1|Name=mRNA_M-pyrifera_M_contig113256.2768.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig113256:210..578- (Macrocystis pyrifera P11B4 male)back to top |