mRNA_M-pyrifera_M_contig113256.2768.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113256.2768.1
Unique NamemRNA_M-pyrifera_M_contig113256.2768.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A7C6RYE5_9GAMM (SirB2 family protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A7C6RYE5_9GAMM)

HSP 1 Score: 131 bits (330), Expect = 3.780e-37
Identity = 71/120 (59.17%), Postives = 85/120 (70.83%), Query Frame = 1
Query:    1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPFL 360
            K LH+T+V+LS GLF +R AW       L R W RI+PHVIDTVLLASAI L + + QYPFVHGWLTAKVLALA YIV GS ALKR  ++  R  A   A+A   YI++VA+TH+P  FL
Sbjct:    6 KHLHITTVILSFGLFALRGAWMLTDSPRLRRRWARIVPHVIDTVLLASAIGLAVVLRQYPFVHGWLTAKVLALALYIVLGSVALKRGSTKPIRATAWIAAMAVFGYIVSVAVTHSPLGFL 125          
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A6N6TCG8_9GAMM (SirB2 family protein n=1 Tax=Candidatus Contendobacter sp. TaxID=2651161 RepID=A0A6N6TCG8_9GAMM)

HSP 1 Score: 128 bits (321), Expect = 9.340e-36
Identity = 70/122 (57.38%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPFLPG 366
            K LH+T+VVLS  LF +R  W       L+R WVRI+PH++DTVLLASAI LTL + QYPFV GWLTAK+LAL AYI+ GS ALKR  ++  R  A   ALA   YI++VALT +P  FL G
Sbjct:    8 KHLHLTAVVLSFALFALRGLWMLADSPQLQRRWVRIVPHLVDTVLLASAIGLTLILQQYPFVDGWLTAKILALIAYIILGSVALKRGPTKPIRAAAGAAALAMFGYIVSVALTRHPLGFLAG 129          
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A2G6JAM6_NEPCE (Regulator SirB n=1 Tax=Neptuniibacter caesariensis TaxID=207954 RepID=A0A2G6JAM6_NEPCE)

HSP 1 Score: 124 bits (310), Expect = 3.770e-34
Identity = 63/115 (54.78%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHN 345
            K  H+T V LSL LF +R  WS  APA+LE+ WV+++PH+IDT+LLASAI LT+ + QYPF   WLTAKVLAL AYI  G+FA+KR ++R+G+ +A  ++L    YI++VA+TH+
Sbjct:    6 KHTHLTCVALSLCLFLLRGYWSLFAPAYLEQRWVKVVPHIIDTLLLASAITLTVLLQQYPFAAHWLTAKVLALLAYIGCGTFAIKRCKTRQGKVIALILSLLCFAYIVSVAVTHS 120          
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A106BKU7_THIDE (Invasion gene expression up-regulator SirB n=1 Tax=Thiobacillus denitrificans TaxID=36861 RepID=A0A106BKU7_THIDE)

HSP 1 Score: 123 bits (309), Expect = 5.680e-34
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPF 357
            K LH+ ++ LSL LF +R  W       L+  WVRI+PH+IDT+LLAS I L + I QYP VHGWLTAKVLAL AYIV G+ ALKR ++R  R  A F AL    Y++AVA+TH+P PF
Sbjct:    7 KNLHLATIALSLALFVLRGVWMMADSPRLQARWVRIVPHLIDTLLLASGIGLAVLIQQYPLVHGWLTAKVLALIAYIVLGTLALKRGKTRGQRIAAWFTALLVFAYMVAVAITHDPFPF 125          
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A536XES5_9PROT (Regulator SirB n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XES5_9PROT)

HSP 1 Score: 122 bits (307), Expect = 1.290e-33
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPA 351
            K +HV S VLSL LF +R AW  V+PA L + WV+++PHV+DTVLL SAIAL + I  YP  H WLTAKV  L AY+V GS ALKR R+R  R  A F ALA   YI++VA+T +PA
Sbjct:    9 KMVHVGSAVLSLALFSVRGAWMMVSPARLGQPWVKVVPHVVDTVLLGSAIALAIAIGNYPGTHAWLTAKVAGLVAYVVLGSIALKRGRTRAIRVAAFFAALAVFAYIVSVAVTKSPA 125          
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A317MXU3_9GAMM (Putative membrane protein SirB2 n=1 Tax=Plasticicumulans acidivorans TaxID=886464 RepID=A0A317MXU3_9GAMM)

HSP 1 Score: 122 bits (306), Expect = 1.940e-33
Identity = 70/122 (57.38%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPFLPG 366
            + LH+ +V LS GLF +R  W  +    L+  WVR+LPHVIDTVLL SAIALTL I QYP  HGWLTAKVLAL AYI  GS ALKR  SRR R  A   A+    YI+ VAL H+PA +  G
Sbjct:   12 RHLHIGAVTLSGGLFLLRGMWMLLDSPQLQARWVRVLPHVIDTVLLLSAIALTLIIQQYPLTHGWLTAKVLALLAYIGLGSVALKRGGSRRTRIAAFMAAVGCFAYIVGVALHHDPASWFAG 133          
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A430KNK0_9GAMM (Uncharacterized protein n=2 Tax=Amphritea TaxID=515417 RepID=A0A430KNK0_9GAMM)

HSP 1 Score: 122 bits (305), Expect = 1.980e-33
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHN 345
            K  H+T  VLS+ LF +R  W    PA L+R WV+I+PH+IDT+LL SAIALT+TI+QYP  HGWLTAK++AL AYI  G+ ALKR ++R  R +A  +ALA V YI+ VAL H+
Sbjct:    6 KHTHITFAVLSILLFSLRGFWMLTTPAKLQRRWVKIVPHIIDTLLLISAIALTVTINQYPLTHGWLTAKLIALVAYIGLGTIALKRGKTRNIRILAFIMALACVVYIVWVALRHS 120          
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A3C1SQQ0_9GAMM (Regulator SirB n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3C1SQQ0_9GAMM)

HSP 1 Score: 122 bits (305), Expect = 2.300e-33
Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPA 351
            K LH+T+V LS  LF +R  W  +    L R WVR++PHVIDTVLLASA+ L   +HQYPFVHGWLTAKV AL  YIV GS ALKR  S+  R  A   ALA   YI++VAL+ +PA
Sbjct:    6 KHLHLTAVALSFTLFVLRGVWMLIDSPRLRRPWVRVVPHVIDTVLLASALGLIAILHQYPFVHGWLTAKVAALVVYIVLGSIALKRGSSKPVRAAAWIAALAVFGYIVSVALSRSPA 122          
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: UPI001664F7D9 (SirB family protein n=2 Tax=Marinobacterium nitratireducens TaxID=518897 RepID=UPI001664F7D9)

HSP 1 Score: 121 bits (304), Expect = 3.080e-33
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPF 357
            K LH+T V LS+ LF +R  W  +    L + WVRI+PH+IDT+LL SA+ L LTI QYPFV+GWLTAK+LAL AYI  G  ALKR RS+  R +A F ALA+  YI  VA++H+P P+
Sbjct:    6 KHLHLTMVTLSICLFMLRGYWMMLGSRLLNQRWVRIIPHLIDTLLLLSAVGLVLTIQQYPFVNGWLTAKLLALVAYIALGMIALKRGRSKGTRTLAFFAALATFGYIAWVAVSHDPTPW 124          
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Match: A0A7Y7D7U5_9GAMM (SirB2 family protein n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A7Y7D7U5_9GAMM)

HSP 1 Score: 120 bits (300), Expect = 1.250e-32
Identity = 64/119 (53.78%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAIALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIALASVTYIIAVALTHNPAPF 357
            K LH+T++ LS+ LF +R  W  +    L R WVRI+PH++DTVLL SAI L LT+ QYPFV+GWLTAK+LAL  YI  G  ALK  RS+  R +A F ALA+  YI +VA++H+P P+
Sbjct:    6 KHLHLTAITLSICLFMLRGYWMMLGSRLLSRRWVRIIPHLVDTVLLLSAIGLMLTLQQYPFVNGWLTAKLLALVVYIAFGMIALKSGRSKGTRLLAFFAALATFGYIASVAVSHDPTPW 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113256.2768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C6RYE5_9GAMM3.780e-3759.17SirB2 family protein n=1 Tax=Xanthomonadaceae bact... [more]
A0A6N6TCG8_9GAMM9.340e-3657.38SirB2 family protein n=1 Tax=Candidatus Contendoba... [more]
A0A2G6JAM6_NEPCE3.770e-3454.78Regulator SirB n=1 Tax=Neptuniibacter caesariensis... [more]
A0A106BKU7_THIDE5.680e-3455.46Invasion gene expression up-regulator SirB n=1 Tax... [more]
A0A536XES5_9PROT1.290e-3357.26Regulator SirB n=1 Tax=Betaproteobacteria bacteriu... [more]
A0A317MXU3_9GAMM1.940e-3357.38Putative membrane protein SirB2 n=1 Tax=Plasticicu... [more]
A0A430KNK0_9GAMM1.980e-3356.52Uncharacterized protein n=2 Tax=Amphritea TaxID=51... [more]
A0A3C1SQQ0_9GAMM2.300e-3357.26Regulator SirB n=1 Tax=Candidatus Competibacterace... [more]
UPI001664F7D93.080e-3355.46SirB family protein n=2 Tax=Marinobacterium nitrat... [more]
A0A7Y7D7U5_9GAMM1.250e-3253.78SirB2 family protein n=1 Tax=Oceanospirillaceae ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113256contigM-pyrifera_M_contig113256:210..578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score118.2
Seed ortholog evalue2.6e-24
Seed eggNOG ortholog207954.MED92_18363
Preferred namesirB
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Invasion gene expression up-regulator
EggNOG OGs1MZN6@1224,1S70H@1236,1XKFQ@135619,COG3094@1,COG3094@2
COG Functional cat.S
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.6169894-CDS-M-pyrifera_M_contig113256:209..5781622815647.6169894-CDS-M-pyrifera_M_contig113256:209..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113256 210..578 -
1692277503.8408723-CDS-M-pyrifera_M_contig113256:209..5781692277503.8408723-CDS-M-pyrifera_M_contig113256:209..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113256 210..578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113256.2768.1prot_M-pyrifera_M_contig113256.2768.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113256 210..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113256.2768.1

>prot_M-pyrifera_M_contig113256.2768.1 ID=prot_M-pyrifera_M_contig113256.2768.1|Name=mRNA_M-pyrifera_M_contig113256.2768.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
KTLHVTSVVLSLGLFGMRLAWSYVAPAWLERAWVRILPHVIDTVLLASAI
ALTLTIHQYPFVHGWLTAKVLALAAYIVAGSFALKRARSRRGRGVAAFIA
LASVTYIIAVALTHNPAPFLPG*
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mRNA from alignment at M-pyrifera_M_contig113256:210..578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113256.2768.1 ID=mRNA_M-pyrifera_M_contig113256.2768.1|Name=mRNA_M-pyrifera_M_contig113256.2768.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig113256:210..578- (Macrocystis pyrifera P11B4 male)
AAAACGCTGCATGTCACGAGCGTCGTACTGTCGCTCGGCTTGTTTGGCAT GCGCCTGGCGTGGTCGTACGTCGCGCCGGCATGGCTCGAACGCGCCTGGG TACGGATCCTGCCGCACGTCATCGACACCGTACTGCTCGCCAGCGCGATC GCGCTGACGCTGACGATCCACCAATACCCGTTCGTGCATGGCTGGCTCAC GGCGAAAGTACTCGCGCTCGCCGCGTACATCGTGGCCGGAAGTTTCGCGC TGAAACGCGCCCGCAGCCGCCGCGGACGGGGCGTCGCTGCCTTTATCGCA CTCGCGAGCGTCACTTACATCATCGCAGTTGCCCTGACCCATAATCCCGC GCCGTTCCTGCCCGGCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113256:210..578-

>mRNA_M-pyrifera_M_contig113256.2768.1 ID=mRNA_M-pyrifera_M_contig113256.2768.1|Name=mRNA_M-pyrifera_M_contig113256.2768.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig113256:210..578- (Macrocystis pyrifera P11B4 male)
AAAACGCTGCATGTCACGAGCGTCGTACTGTCGCTCGGCTTGTTTGGCAT
GCGCCTGGCGTGGTCGTACGTCGCGCCGGCATGGCTCGAACGCGCCTGGG
TACGGATCCTGCCGCACGTCATCGACACCGTACTGCTCGCCAGCGCGATC
GCGCTGACGCTGACGATCCACCAATACCCGTTCGTGCATGGCTGGCTCAC
GGCGAAAGTACTCGCGCTCGCCGCGTACATCGTGGCCGGAAGTTTCGCGC
TGAAACGCGCCCGCAGCCGCCGCGGACGGGGCGTCGCTGCCTTTATCGCA
CTCGCGAGCGTCACTTACATCATCGCAGTTGCCCTGACCCATAATCCCGC
GCCGTTCCTGCCCGGCTAAAAAACGCTGCATGTCACGAGCGTCGTACTGT
CGCTCGGCTTGTTTGGCATGCGCCTGGCGTGGTCGTACGTCGCGCCGGCA
TGGCTCGAACGCGCCTGGGTACGGATCCTGCCGCACGTCATCGACACCGT
ACTGCTCGCCAGCGCGATCGCGCTGACGCTGACGATCCACCAATACCCGT
TCGTGCATGGCTGGCTCACGGCGAAAGTACTCGCGCTCGCCGCGTACATC
GTGGCCGGAAGTTTCGCGCTGAAACGCGCCCGCAGCCGCCGCGGACGGGG
CGTCGCTGCCTTTATCGCACTCGCGAGCGTCACTTACATCATCGCAGTTG
CCCTGACCCATAATCCCGCGCCGTTCCTGCCCGGCTAA
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