mRNA_M-pyrifera_M_contig113233.2762.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113233.2762.1
Unique NamemRNA_M-pyrifera_M_contig113233.2762.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113233.2762.1 vs. uniprot
Match: A0A518DS04_9BACT (Acetyltransf_6 domain-containing protein n=2 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518DS04_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.390e-8
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    4 RIDLSKGPEEYKRLFTSGEVEVTEGSVDLGTVSHFVKQGWIRTRERISNSMLYRPARATKRMMRS 198
            R+DL KGPEEYK+ F +G + V EGSV+   +++ V++GW +T+     S L RP  A  R++R+
Sbjct:  285 RVDLGKGPEEYKQHFATGSIAVAEGSVERSPLTYAVRRGWRQTQAYFRQSPLRRPLLAPYRLLRN 349
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BLAST of mRNA_M-pyrifera_M_contig113233.2762.1 vs. uniprot
Match: A0A517TCS8_9PLAN (Acetyltransf_6 domain-containing protein n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517TCS8_9PLAN)

HSP 1 Score: 50.8 bits (120), Expect = 1.280e-5
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 RRIDLSKGPEEYKRLFTSGEVEVTEGSVDLGTVSHFVKQGWIRTRERISNSMLY----RPARATKRMMRSM 201
            +RIDL KGPEEYK  F SG   V  G+VD     + +++GW  T   +  SML     +PARA K   RS+
Sbjct:  285 KRIDLGKGPEEYKASFQSGVTMVGMGAVDRRPFVNHLRRGWDVTERTLKESMLADTLRKPARALKSWRRSL 355
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113233.2762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A518DS04_9BACT2.390e-843.08Acetyltransf_6 domain-containing protein n=2 Tax=L... [more]
A0A517TCS8_9PLAN1.280e-543.66Acetyltransf_6 domain-containing protein n=1 Tax=C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113233contigM-pyrifera_M_contig113233:1..213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue3.8e-07
Seed eggNOG ortholog530564.Psta_3837
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Acetyltransferase (GNAT) domain
EggNOG OGs2J18H@203682,COG5653@1,COG5653@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.335992-CDS-M-pyrifera_M_contig113233:0..2131622815647.335992-CDS-M-pyrifera_M_contig113233:0..213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113233 1..213 +
1692277503.7391946-CDS-M-pyrifera_M_contig113233:0..2131692277503.7391946-CDS-M-pyrifera_M_contig113233:0..213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113233 1..213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113233.2762.1prot_M-pyrifera_M_contig113233.2762.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113233 1..213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113233.2762.1

>prot_M-pyrifera_M_contig113233.2762.1 ID=prot_M-pyrifera_M_contig113233.2762.1|Name=mRNA_M-pyrifera_M_contig113233.2762.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
RRIDLSKGPEEYKRLFTSGEVEVTEGSVDLGTVSHFVKQGWIRTRERISN
SMLYRPARATKRMMRSMRDRL
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mRNA from alignment at M-pyrifera_M_contig113233:1..213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113233.2762.1 ID=mRNA_M-pyrifera_M_contig113233.2762.1|Name=mRNA_M-pyrifera_M_contig113233.2762.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig113233:1..213+ (Macrocystis pyrifera P11B4 male)
CGGCGGATCGATCTCAGCAAAGGTCCAGAAGAATACAAGCGTCTGTTCAC
CTCCGGAGAAGTCGAGGTTACAGAGGGCTCAGTCGATCTGGGGACTGTCT
CGCATTTCGTCAAACAGGGCTGGATTCGTACACGCGAACGGATCAGCAAT
TCGATGCTCTATCGGCCTGCCCGGGCGACCAAACGCATGATGCGGTCGAT
GCGAGACCGATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113233:1..213+

>mRNA_M-pyrifera_M_contig113233.2762.1 ID=mRNA_M-pyrifera_M_contig113233.2762.1|Name=mRNA_M-pyrifera_M_contig113233.2762.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig113233:1..213+ (Macrocystis pyrifera P11B4 male)
CGGCGGATCGATCTCAGCAAAGGTCCAGAAGAATACAAGCGTCTGTTCAC
CTCCGGAGAAGTCGAGGTTACAGAGGGCTCAGTCGATCTGGGGACTGTCT
CGCATTTCGTCAAACAGGGCTGGATTCGTACACGCGAACGGATCAGCAAT
TCGATGCTCTATCGGCCTGCCCGGGCGACCAAACGCATGATGCGGTCGAT
GCGAGACCGATTGCGGCGGATCGATCTCAGCAAAGGTCCAGAAGAATACA
AGCGTCTGTTCACCTCCGGAGAAGTCGAGGTTACAGAGGGCTCAGTCGAT
CTGGGGACTGTCTCGCATTTCGTCAAACAGGGCTGGATTCGTACACGCGA
ACGGATCAGCAATTCGATGCTCTATCGGCCTGCCCGGGCGACCAAACGCA
TGATGCGGTCGATGCGAGACCGATTG
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