mRNA_M-pyrifera_M_contig113230.2760.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113230.2760.1
Unique NamemRNA_M-pyrifera_M_contig113230.2760.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Match: A0A518BIQ2_9BACT (Polysaccharide biosynthesis protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BIQ2_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 5.340e-14
Identity = 57/118 (48.31%), Postives = 72/118 (61.02%), Query Frame = 1
Query:   25 GLAVPHAAWLLETLFKPSFVDAATSLSLLLFAMAVIYFGSLHLTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTEGAVAVFAAVALWRAGARSLAH-RPLLWL 375
            GLA+P A  +LE LF   F  A  SL  LL A A +Y G+  LTAV++ GR +    I VGAL +NV  N +LVP +G +GAA+AT+ TE AVAV A+ A+    A S A  RP  WL
Sbjct:  324 GLALPLARPILEGLFGEPFGAATASLQWLLGATAAVYAGATLLTAVVSLGRPKFVLMIAVGALALNVVGNGILVPMYGHEGAAIATLGTEIAVAV-ASAAVLAVHAPSFARTRPWAWL 440          
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Match: A0A523PQE4_9BACT (Polysacc_synt_C domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PQE4_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 7.760e-14
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 1
Query:   55 LETLFKPSFVDAATSLSLLLFAMAVIYFGSLHLTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTEGAVAVFAAVALWRAGARSLAHRPLLWL 375
            L  LF   F  A  +L  LL A   +Y G+  LTAV+A+GR R    +    L +N+  N+ LVPR GI+GAA AT+ TE AV + AA+ L R GA  L  RP  WL
Sbjct:  412 LLALFGAGFAAAGDTLRWLLLACLAVYVGATFLTAVVASGRARGVLGVAAAGLAVNLIGNSALVPRMGIEGAAAATLATEIAVVLGAAMVLARVGAHPLRSRPWAWL 518          
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Match: A0A7C8D133_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8D133_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 1.030e-13
Identity = 51/105 (48.57%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   64 LFKPSFVDAATSLSLLLFAMAVIYFGSLHLTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTEGAVAVFAAVALWRAGARSLAHRPLL-WL 375
            +F   F +AA+SL  LL A  ++Y G+  LTAV+ATGRT     I    L  N+A NA L+P+HG+ GAA+AT +TEG VAV A VAL   G   L  R  L WL
Sbjct:  358 IFGAQFTEAASSLRWLLGAATLVYMGANLLTAVVATGRTLAVLAIASLGLATNLAGNAWLLPKHGMQGAAIATFMTEGVVAVGALVALASGGVAGLGGRAALGWL 462          
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Match: A0A845X8N3_9CYAN (Flippase n=1 Tax=Spirulina sp. SIO3F2 TaxID=2607816 RepID=A0A845X8N3_9CYAN)

HSP 1 Score: 65.1 bits (157), Expect = 1.070e-9
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   16 VVSGLAVPHAAWLLETLFKPSFVDAATSLSLLLFAMAVIYFGSLHLTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTE 294
            VV G  V  +AWL+ T++   F  A   L LL F +  IY+G L   +++A  + +    +T+ A+G+NV LNA L+P +   GAA+AT++TE
Sbjct:  288 VVCGAMVLSSAWLVTTIYGTDFQGAIAILQLLSFTLIPIYWGHLATQSLVALDQQKLYLLLTLAAVGLNVGLNAWLIPSYSAQGAAIATIITE 380          
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Match: A0A518EXV0_9BACT (Polysaccharide biosynthesis protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EXV0_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 2.760e-9
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    4 LGAAVVSGLAVPHAAWLLETLFKPSFVDAATSLSLLLFAMAVIYFGSLHLTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTEGAVAVFAAVALWR 333
            LGAAV +GLA P    +L  LF   F  AA SL+ LL A   ++ G+  LTAV+A GR R+        L +NVA NA LVP HG++GAA+AT+ TE  + V A +AL R
Sbjct:  299 LGAAV-AGLAFPFREEILG-LFGEEFRVAAPSLAWLLGAAFAVHLGAPLLTAVVAAGRGRSVLVAAAIGLLLNVAGNAWLVPSHGMEGAAIATLATEVWIVVAAFMALVR 406          
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Match: A0A800G0P9_9BACT (Polysacc_synt_C domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G0P9_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 2.830e-9
Identity = 56/125 (44.80%), Postives = 66/125 (52.80%), Query Frame = 1
Query:    4 LGAAVVSGLAVPHAAWLLETLFKPSFVDAATSLSLLLFAMAVIYFGSLHLTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTEGAVAVFAAVALWRAGARSLAHRPL-LWL 375
            LG  VV GL  P      E     SF  AA SL  L+     +Y G+  LTAV+A+G +     I    L IN+  N+LLVP  GI+GAALAT+VTE  V V AA  L   GAR  A R   LWL
Sbjct:  306 LGTGVVWGLPEPILGLFGE---GASFTSAAPSLRWLMLGGLAVYAGAPLLTAVVASGSSAAVLRIAAIGLVINLLGNSLLVPSMGIEGAALATLVTEVWVVVGAASTLVNMGARPTAPRQAWLWL 427          
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Match: A0A800N3M5_9BACT (Polysacc_synt_C domain-containing protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800N3M5_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 9.790e-9
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   64 LFKPSFVDAATSLSLLLFAMAVIYFGSLHLTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTEGAVAVFAAVAL 327
            LF  SF  A   L LLL A+  ++ G+   TA++A  RT +   +T+ AL +NVALN+L VP  G+ GAA AT++TEG +A+ AA+AL
Sbjct:  358 LFGESFRVAEDPLKLLLLAVICVHAGAPLSTALVAARRTYSVLTLTLSALLLNVALNSLWVPTEGLIGAARATLITEGWIALGAALAL 445          
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Match: A0A6B8W6X9_9CORY (Polysaccharide biosynthesis protein n=1 Tax=Corynebacterium comes TaxID=2675218 RepID=A0A6B8W6X9_9CORY)

HSP 1 Score: 61.2 bits (147), Expect = 2.530e-8
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   10 AAVVSGLAV----PHAAWLLETLFKPSFVDAATSLSLLLFAMAVIYFGSLHLTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTE 294
            AA++ GLAV    P +  L+  L+ P F  AAT+ +LL+   A+     + ++A+IA  + R   W+    L +NV LN LL+PR  IDGAA+ATV+T+
Sbjct:  318 AAILGGLAVVIFWPSSRALITFLYGPQFAGAATAAALLVAGSALSGLTFVVISALIAAKKLRVFPWLASVGLLLNVGLNLLLIPRWSIDGAAVATVLTQ 416          
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Match: A0A2E6X9V1_9PROT (Polysacc_synt_C domain-containing protein n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E6X9V1_9PROT)

HSP 1 Score: 60.1 bits (144), Expect = 6.390e-8
Identity = 39/104 (37.50%), Postives = 63/104 (60.58%), Query Frame = 1
Query:    1 FLGAAVVSGLAVPHAAWLLETLFKPSFVDAATSLSLLLFAMAVIYFGSLHLTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTEGAVAVF 312
            FLG  +V G  V  A  ++E LF P F +A+ +L +L+  + V Y    + T ++A    +  + + V    IN+ALN +L+PR GI+GAALAT++T+ A+ +F
Sbjct:  310 FLG-GLVGGFGVLMAPAIIELLFGPEFAEASLALKILMAHIFVFYLTQAYGTPLLAWQFDKGYTTVLVVGAIINIALNIVLIPRIGIEGAALATLITQLAIGLF 412          
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Match: A0A0B6TYZ6_9CORY (Polysacc_synt_C domain-containing protein n=1 Tax=Corynebacterium marinum DSM 44953 TaxID=1224162 RepID=A0A0B6TYZ6_9CORY)

HSP 1 Score: 58.9 bits (141), Expect = 1.620e-7
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   10 AAVVSGLAV----PHAAWLLETLFKPSFVDAATSLSLLLFAMAVIYFGSLHLTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTE 294
            AA++ GLAV    P +  L+  L+ P F  AATS +LL+ + A+     +  +A+IA  + R   W+    L +NV LN +L+P   IDGAA+AT++TE
Sbjct:  314 AAMLGGLAVVVFWPSSRALITLLYGPQFAGAATSAALLVTSSALAGLTFVVTSALIAARKLRIFPWLAAVGLLLNVGLNLVLIPLWSIDGAAVATLITE 412          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113230.2760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518BIQ2_9BACT5.340e-1448.31Polysaccharide biosynthesis protein n=1 Tax=Planct... [more]
A0A523PQE4_9BACT7.760e-1444.86Polysacc_synt_C domain-containing protein n=1 Tax=... [more]
A0A7C8D133_9BACT1.030e-1348.57Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A845X8N3_9CYAN1.070e-938.71Flippase n=1 Tax=Spirulina sp. SIO3F2 TaxID=260781... [more]
A0A518EXV0_9BACT2.760e-947.27Polysaccharide biosynthesis protein n=1 Tax=Planct... [more]
A0A800G0P9_9BACT2.830e-944.80Polysacc_synt_C domain-containing protein n=1 Tax=... [more]
A0A800N3M5_9BACT9.790e-946.59Polysacc_synt_C domain-containing protein n=2 Tax=... [more]
A0A6B8W6X9_9CORY2.530e-840.40Polysaccharide biosynthesis protein n=1 Tax=Coryne... [more]
A0A2E6X9V1_9PROT6.390e-837.50Polysacc_synt_C domain-containing protein n=1 Tax=... [more]
A0A0B6TYZ6_9CORY1.620e-739.39Polysacc_synt_C domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113230contigM-pyrifera_M_contig113230:159..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.5
Seed ortholog evalue6.8e-10
Seed eggNOG ortholog1386969.AWTB01000007_gene2729
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Polysaccharide biosynthesis C-terminal domain
EggNOG OGs2HX3M@201174,4GCWI@85026,COG2244@1,COG2244@2
COG Functional cat.S
Best tax levelGordoniaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.267909-CDS-M-pyrifera_M_contig113230:158..5571622815647.267909-CDS-M-pyrifera_M_contig113230:158..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113230 159..557 -
1692277503.7154715-CDS-M-pyrifera_M_contig113230:158..5571692277503.7154715-CDS-M-pyrifera_M_contig113230:158..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113230 159..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113230.2760.1prot_M-pyrifera_M_contig113230.2760.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113230 159..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113230.2760.1

>prot_M-pyrifera_M_contig113230.2760.1 ID=prot_M-pyrifera_M_contig113230.2760.1|Name=mRNA_M-pyrifera_M_contig113230.2760.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
FLGAAVVSGLAVPHAAWLLETLFKPSFVDAATSLSLLLFAMAVIYFGSLH
LTAVIATGRTRTASWITVGALGINVALNALLVPRHGIDGAALATVVTEGA
VAVFAAVALWRAGARSLAHRPLLWLAAVGAGAL
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mRNA from alignment at M-pyrifera_M_contig113230:159..557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113230.2760.1 ID=mRNA_M-pyrifera_M_contig113230.2760.1|Name=mRNA_M-pyrifera_M_contig113230.2760.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig113230:159..557- (Macrocystis pyrifera P11B4 male)
TTCCTGGGCGCGGCGGTCGTGTCGGGCCTGGCGGTGCCGCACGCGGCGTG GCTGCTCGAGACGCTGTTCAAGCCCAGCTTCGTCGATGCCGCGACCAGCC TGTCGCTGCTGCTCTTTGCGATGGCGGTGATCTACTTCGGATCGCTGCAC CTGACCGCCGTGATCGCGACCGGCCGCACGCGCACCGCGTCGTGGATCAC GGTCGGGGCCCTGGGCATCAACGTCGCGCTCAACGCGCTGCTGGTGCCGC GCCACGGCATCGACGGCGCGGCGCTGGCGACGGTGGTCACCGAGGGCGCG GTCGCCGTCTTCGCGGCGGTCGCGCTGTGGCGCGCCGGCGCGCGCTCCTT GGCGCACCGGCCGCTCCTCTGGCTCGCGGCGGTCGGCGCCGGCGCGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113230:159..557-

>mRNA_M-pyrifera_M_contig113230.2760.1 ID=mRNA_M-pyrifera_M_contig113230.2760.1|Name=mRNA_M-pyrifera_M_contig113230.2760.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig113230:159..557- (Macrocystis pyrifera P11B4 male)
TTCCTGGGCGCGGCGGTCGTGTCGGGCCTGGCGGTGCCGCACGCGGCGTG
GCTGCTCGAGACGCTGTTCAAGCCCAGCTTCGTCGATGCCGCGACCAGCC
TGTCGCTGCTGCTCTTTGCGATGGCGGTGATCTACTTCGGATCGCTGCAC
CTGACCGCCGTGATCGCGACCGGCCGCACGCGCACCGCGTCGTGGATCAC
GGTCGGGGCCCTGGGCATCAACGTCGCGCTCAACGCGCTGCTGGTGCCGC
GCCACGGCATCGACGGCGCGGCGCTGGCGACGGTGGTCACCGAGGGCGCG
GTCGCCGTCTTCGCGGCGGTCGCGCTGTGGCGCGCCGGCGCGCGCTCCTT
GGCGCACCGGCCGCTCCTCTGGCTCGCGGCGGTCGGCGCCGGCGCGCTGT
TCCTGGGCGCGGCGGTCGTGTCGGGCCTGGCGGTGCCGCACGCGGCGTGG
CTGCTCGAGACGCTGTTCAAGCCCAGCTTCGTCGATGCCGCGACCAGCCT
GTCGCTGCTGCTCTTTGCGATGGCGGTGATCTACTTCGGATCGCTGCACC
TGACCGCCGTGATCGCGACCGGCCGCACGCGCACCGCGTCGTGGATCACG
GTCGGGGCCCTGGGCATCAACGTCGCGCTCAACGCGCTGCTGGTGCCGCG
CCACGGCATCGACGGCGCGGCGCTGGCGACGGTGGTCACCGAGGGCGCGG
TCGCCGTCTTCGCGGCGGTCGCGCTGTGGCGCGCCGGCGCGCGCTCCTTG
GCGCACCGGCCGCTCCTCTGGCTCGCGGCGGTCGGCGCCGGCGCGCTG
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