mRNA_M-pyrifera_M_contig113215.2755.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113215.2755.1
Unique NamemRNA_M-pyrifera_M_contig113215.2755.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Match: A0A356VNJ3_9GAMM (2-keto-4-pentenoate hydratase n=10 Tax=Halieaceae TaxID=1706372 RepID=A0A356VNJ3_9GAMM)

HSP 1 Score: 367 bits (942), Expect = 4.360e-126
Identity = 183/193 (94.82%), Postives = 186/193 (96.37%), Query Frame = 1
Query:    1 DVAWGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIELAGPDGA 579
            DVAWGIDFEGEVAVITGDVPMGASAAQAAGAIRL MLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPL+IHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPL AGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAE+RMIE LRDGQPSTA MQFGDRVSIE+A   GA
Sbjct:  125 DVAWGIDFEGEVAVITGDVPMGASAAQAAGAIRLLMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLSIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLSAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAELRMIETLRDGQPSTAFMQFGDRVSIEMADAGGA 317          
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Match: A0A2E7BZU0_9GAMM (2-keto-4-pentenoate hydratase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7BZU0_9GAMM)

HSP 1 Score: 328 bits (840), Expect = 1.400e-110
Identity = 161/187 (86.10%), Postives = 170/187 (90.91%), Query Frame = 1
Query:    1 DVAWGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIEL 561
            D AWGIDFEGEVAV+TGDVPMGAS AQA  AIRL MLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTP+ELG AWDGGRLHLPL++ +N   FG+ANAGVDMTFDFPTLIAHAAKTRPL AGTIIGSGTVSNK ADGSPGKPV  GGLGYSCIAE+RMIE LRDGQP+TA MQFGDRV IE+
Sbjct:  125 DPAWGIDFEGEVAVVTGDVPMGASPAQAGAAIRLIMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPEELGAAWDGGRLHLPLSVRYNGERFGEANAGVDMTFDFPTLIAHAAKTRPLCAGTIIGSGTVSNKDADGSPGKPVAEGGLGYSCIAELRMIETLRDGQPATAFMQFGDRVCIEM 311          
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Match: A0A5C9A217_9GAMM (Fumarylacetoacetate hydrolase family protein n=1 Tax=Parahaliea aestuarii TaxID=1852021 RepID=A0A5C9A217_9GAMM)

HSP 1 Score: 318 bits (814), Expect = 1.160e-106
Identity = 155/189 (82.01%), Postives = 168/189 (88.89%), Query Frame = 1
Query:   10 WGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIELAGPDG 576
            WGIDFEGE+AV+TGDVPMGA+AAQAA AIRL MLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELG AW+GGRLHLPL + +N ALFGKANAGVDMTFDFPTL+AHAAKTRPL AGTIIGSGTVSNK ADGSPG+PV AGGLGYSCIAE+RMIE +  G P T  M++GDRV IE+    G
Sbjct:  128 WGIDFEGEIAVVTGDVPMGATAAQAAEAIRLVMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGDAWNGGRLHLPLLVSYNGALFGKANAGVDMTFDFPTLVAHAAKTRPLGAGTIIGSGTVSNKDADGSPGRPVAAGGLGYSCIAEIRMIETIEGGAPQTPFMRYGDRVRIEMCDESG 316          
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Match: A0A6C0TZC0_9GAMM (Fumarylacetoacetate hydrolase family protein n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0TZC0_9GAMM)

HSP 1 Score: 315 bits (806), Expect = 1.910e-105
Identity = 154/193 (79.79%), Postives = 169/193 (87.56%), Query Frame = 1
Query:    1 DVAWGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIELAGPDGA 579
            D  WGIDFEGEVAVITGDVPMGAS  QAA AI+L MLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELG AWDGGRLHLPL + +N + FG+A+AGVDMTFDFPTL+AHAAKTRPL AGT+IGSGTVSNK ADGSPG+PV  GG GYSCIAE+RMIE +RDG+PST  MQFGD+V +E+    GA
Sbjct:  125 DTDWGIDFEGEVAVITGDVPMGASREQAAAAIQLVMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGDAWDGGRLHLPLLVSYNGSPFGRADAGVDMTFDFPTLVAHAAKTRPLGAGTVIGSGTVSNKDADGSPGRPVADGGAGYSCIAEIRMIETIRDGKPSTRFMQFGDQVRLEMLDAAGA 317          
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Match: UPI000E2FDCE4 (fumarylacetoacetate hydrolase family protein n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI000E2FDCE4)

HSP 1 Score: 308 bits (788), Expect = 1.030e-102
Identity = 152/190 (80.00%), Postives = 167/190 (87.89%), Query Frame = 1
Query:   10 WGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIELAGPDGA 579
            WGIDFEGE+AV+TGDVPMGA+ AQAA AIRL MLVNDVSLRNLIP ELGKGFGFFQSKPSSAFSPVCVTPD LG AW+ GRLHLPL + +N A FGKANAGVDMTFDFPTL+AHAAKTRPL AGTIIGSGTVSNK ADGSPG+PV+ GGLGYSCIAE+RMIE ++ G+P TA MQ+GD V IE+   DGA
Sbjct:  128 WGIDFEGEIAVVTGDVPMGATPAQAAAAIRLVMLVNDVSLRNLIPGELGKGFGFFQSKPSSAFSPVCVTPDALGGAWNDGRLHLPLLVSYNGAPFGKANAGVDMTFDFPTLVAHAAKTRPLGAGTIIGSGTVSNKDADGSPGRPVSEGGLGYSCIAEIRMIETIQQGKPQTAFMQYGDTVRIEMR--DGA 315          
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Match: A0A5C9AA51_9GAMM (Fumarylacetoacetate hydrolase family protein n=1 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C9AA51_9GAMM)

HSP 1 Score: 306 bits (785), Expect = 2.950e-102
Identity = 148/190 (77.89%), Postives = 163/190 (85.79%), Query Frame = 1
Query:   10 WGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIELAGPDGA 579
            WGIDFEGE+AV+TGDVPMGAS  +AA +IRL MLVNDVSLRNLIP ELGKGFGFFQSKPSSAFSPVCVTPDELG AWDGGRLHLPL + +N   FGKANAGVDMTFDFPTL+AHAAKTRPL AGTIIGSGTVSNK ADG+PG+PV+ GGLGYSCIAE+RMIE +  G P T  M +GDRV IE+    G+
Sbjct:  128 WGIDFEGEIAVVTGDVPMGASVEEAAASIRLVMLVNDVSLRNLIPGELGKGFGFFQSKPSSAFSPVCVTPDELGDAWDGGRLHLPLLVSYNGEAFGKANAGVDMTFDFPTLVAHAAKTRPLGAGTIIGSGTVSNKDADGAPGRPVSEGGLGYSCIAEIRMIETIASGAPKTGFMAYGDRVRIEMLDAAGS 317          
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Match: A0A2N5Y686_9GAMM (2-keto-4-pentenoate hydratase n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y686_9GAMM)

HSP 1 Score: 304 bits (778), Expect = 3.410e-101
Identity = 149/192 (77.60%), Postives = 163/192 (84.90%), Query Frame = 1
Query:    1 DVAWGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIELAGPDG 576
            D  WGIDFEGEVAVITGDVPMGA+  QAA +IRL MLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPV VTPDELG AWDGGRLHLPL    N   FG ANAGVDMTFDFPTL+AHAAKTRPL AG+I+GSGTVSNK  DGSPG+P+  GGLGYSCIAE+RMIE + +G+P+T  MQFGDRV +E+   DG
Sbjct:  125 DADWGIDFEGEVAVITGDVPMGATLEQAAASIRLVMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVAVTPDELGSAWDGGRLHLPLLAALNGRPFGMANAGVDMTFDFPTLVAHAAKTRPLSAGSIVGSGTVSNKDGDGSPGRPIAEGGLGYSCIAEIRMIETISNGKPTTPFMQFGDRVRLEMLSLDG 316          
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Match: UPI0019D3306B (Fumarylacetoacetate hydrolase family protein n=2 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D3306B)

HSP 1 Score: 302 bits (774), Expect = 1.380e-100
Identity = 148/193 (76.68%), Postives = 164/193 (84.97%), Query Frame = 1
Query:    1 DVAWGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIELAGPDGA 579
            D  WGIDFEGEVAVITGDVPMGAS  QAA AIRL MLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPD+LG AWDGGRL LPL + +N   FG+A+AGVDMTFDFPTL+AHAA+TR L AG IIGSGTVSNK +DG PG+PV  GGLGYSCIAE+RMIE ++ G+P TA MQ+GDRV +E+    GA
Sbjct:  125 DPGWGIDFEGEVAVITGDVPMGASREQAAQAIRLVMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDQLGDAWDGGRLRLPLRVTYNGEAFGRADAGVDMTFDFPTLVAHAARTRALGAGAIIGSGTVSNKDSDGGPGRPVKDGGLGYSCIAEIRMIETIQQGEPQTAFMQYGDRVRLEMFDAKGA 317          
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Match: UPI00174BBDC2 (fumarylacetoacetate hydrolase family protein n=1 Tax=Kordiimonas sediminis TaxID=1735581 RepID=UPI00174BBDC2)

HSP 1 Score: 298 bits (762), Expect = 1.070e-98
Identity = 147/189 (77.78%), Postives = 162/189 (85.71%), Query Frame = 1
Query:   10 WGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIELAGPDG 576
            WGIDFEGE+AVIT DVPMGASA  AA AIRL MLVNDVSLR LIPAEL KGFGFFQSKPSSAFSPV VTPDELG AWDGGRLH PL + +N + FG ANAGVDMTFDFPTLIAHAAKTRPL AG IIGSGTVSNK +DGS GKPV+ GGLGYSCIAE+RMIE +++G+PST  M FGDRV+I++   +G
Sbjct:  134 WGIDFEGEIAVITDDVPMGASAETAASAIRLLMLVNDVSLRGLIPAELAKGFGFFQSKPSSAFSPVAVTPDELGSAWDGGRLHRPLLVQYNGSAFGCANAGVDMTFDFPTLIAHAAKTRPLGAGAIIGSGTVSNKDSDGSAGKPVSEGGLGYSCIAEIRMIETIKNGKPSTGFMAFGDRVAIDMLDEEG 322          
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Match: UPI0010AA30DB (fumarylacetoacetate hydrolase family protein n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI0010AA30DB)

HSP 1 Score: 296 bits (758), Expect = 4.940e-98
Identity = 145/192 (75.52%), Postives = 161/192 (83.85%), Query Frame = 1
Query:    1 DVAWGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAELGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGKANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTAGGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIELAGPDG 576
            D AWGID EGEVAVI  DVPMGA   +A  AIRL MLVNDVSLR LIPAELGKGFGFFQSKPSSAFSPV VTPDELG AWDGGR+HLPLN+ +N A FG+ANAG+DMTFDFP LIAHAAK+RPL AG IIGSGTVSNK  DGSPG+PV  GG+GYSCIAE+RMIE + DG+P+TA M+FGD V IE+   +G
Sbjct:  131 DEAWGIDMEGEVAVIVDDVPMGAGIDEARDAIRLIMLVNDVSLRGLIPAELGKGFGFFQSKPSSAFSPVAVTPDELGDAWDGGRVHLPLNVDYNGAPFGRANAGIDMTFDFPQLIAHAAKSRPLSAGAIIGSGTVSNKMEDGSPGRPVAEGGVGYSCIAEIRMIETINDGKPTTAFMKFGDTVRIEMKDAEG 322          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113215.2755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A356VNJ3_9GAMM4.360e-12694.822-keto-4-pentenoate hydratase n=10 Tax=Halieaceae ... [more]
A0A2E7BZU0_9GAMM1.400e-11086.102-keto-4-pentenoate hydratase n=1 Tax=Haliea sp. T... [more]
A0A5C9A217_9GAMM1.160e-10682.01Fumarylacetoacetate hydrolase family protein n=1 T... [more]
A0A6C0TZC0_9GAMM1.910e-10579.79Fumarylacetoacetate hydrolase family protein n=1 T... [more]
UPI000E2FDCE41.030e-10280.00fumarylacetoacetate hydrolase family protein n=1 T... [more]
A0A5C9AA51_9GAMM2.950e-10277.89Fumarylacetoacetate hydrolase family protein n=1 T... [more]
A0A2N5Y686_9GAMM3.410e-10177.602-keto-4-pentenoate hydratase n=1 Tax=Kineobactrum... [more]
UPI0019D3306B1.380e-10076.68Fumarylacetoacetate hydrolase family protein n=2 T... [more]
UPI00174BBDC21.070e-9877.78fumarylacetoacetate hydrolase family protein n=1 T... [more]
UPI0010AA30DB4.940e-9875.52fumarylacetoacetate hydrolase family protein n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113215contigM-pyrifera_M_contig113215:2..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score369.0
Seed ortholog evalue1.3e-99
Seed eggNOG ortholog1121937.AUHJ01000012_gene2755
Preferred nameuptA
KEGG rclassRC00326,RC00446
KEGG koko:K16171
KEGG ReactionR01364
KEGG Pathwayko00350,ko00643,ko01100,ko01120,map00350,map00643,map01100,map01120
KEGG ModuleM00044
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
EggNOG OGs1MV0V@1224,1RNYV@1236,465V2@72275,COG0179@1,COG0179@2
EC3.7.1.2
COG Functional cat.Q
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.0040023-CDS-M-pyrifera_M_contig113215:1..5801622815647.0040023-CDS-M-pyrifera_M_contig113215:1..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113215 2..580 +
1692277503.6140194-CDS-M-pyrifera_M_contig113215:1..5801692277503.6140194-CDS-M-pyrifera_M_contig113215:1..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113215 2..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113215.2755.1prot_M-pyrifera_M_contig113215.2755.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113215 2..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113215.2755.1

>prot_M-pyrifera_M_contig113215.2755.1 ID=prot_M-pyrifera_M_contig113215.2755.1|Name=mRNA_M-pyrifera_M_contig113215.2755.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
DVAWGIDFEGEVAVITGDVPMGASAAQAAGAIRLFMLVNDVSLRNLIPAE
LGKGFGFFQSKPSSAFSPVCVTPDELGPAWDGGRLHLPLNIHFNDALFGK
ANAGVDMTFDFPTLIAHAAKTRPLVAGTIIGSGTVSNKGADGSPGKPVTA
GGLGYSCIAEVRMIEALRDGQPSTALMQFGDRVSIELAGPDGA
back to top

mRNA from alignment at M-pyrifera_M_contig113215:2..580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113215.2755.1 ID=mRNA_M-pyrifera_M_contig113215.2755.1|Name=mRNA_M-pyrifera_M_contig113215.2755.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig113215:2..580+ (Macrocystis pyrifera P11B4 male)
GATGTTGCCTGGGGCATCGATTTCGAAGGCGAAGTCGCGGTTATCACGGG GGATGTGCCCATGGGTGCGAGCGCGGCGCAGGCCGCCGGGGCGATCCGCC TGTTCATGCTGGTCAACGATGTGTCTTTGCGCAACCTGATCCCCGCGGAA CTGGGCAAGGGCTTCGGTTTCTTCCAGTCCAAGCCTTCCAGCGCGTTCAG CCCGGTGTGTGTGACGCCAGACGAGCTGGGCCCGGCCTGGGACGGCGGTC GGCTGCACCTGCCGCTGAACATACACTTCAATGACGCACTGTTTGGAAAG GCGAATGCCGGGGTCGACATGACCTTCGATTTCCCCACGCTGATCGCCCA TGCGGCGAAAACCCGCCCGCTGGTTGCCGGCACGATTATCGGCTCTGGCA CCGTATCCAACAAGGGTGCCGACGGATCGCCGGGAAAACCGGTCACGGCC GGCGGGCTGGGTTACAGCTGCATTGCGGAGGTGCGCATGATCGAAGCCCT GCGTGATGGCCAGCCATCCACGGCGCTCATGCAGTTCGGTGACCGGGTGA GCATCGAGCTGGCAGGCCCGGATGGCGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig113215:2..580+

>mRNA_M-pyrifera_M_contig113215.2755.1 ID=mRNA_M-pyrifera_M_contig113215.2755.1|Name=mRNA_M-pyrifera_M_contig113215.2755.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig113215:2..580+ (Macrocystis pyrifera P11B4 male)
GATGTTGCCTGGGGCATCGATTTCGAAGGCGAAGTCGCGGTTATCACGGG
GGATGTGCCCATGGGTGCGAGCGCGGCGCAGGCCGCCGGGGCGATCCGCC
TGTTCATGCTGGTCAACGATGTGTCTTTGCGCAACCTGATCCCCGCGGAA
CTGGGCAAGGGCTTCGGTTTCTTCCAGTCCAAGCCTTCCAGCGCGTTCAG
CCCGGTGTGTGTGACGCCAGACGAGCTGGGCCCGGCCTGGGACGGCGGTC
GGCTGCACCTGCCGCTGAACATACACTTCAATGACGCACTGTTTGGAAAG
GCGAATGCCGGGGTCGACATGACCTTCGATTTCCCCACGCTGATCGCCCA
TGCGGCGAAAACCCGCCCGCTGGTTGCCGGCACGATTATCGGCTCTGGCA
CCGTATCCAACAAGGGTGCCGACGGATCGCCGGGAAAACCGGTCACGGCC
GGCGGGCTGGGTTACAGCTGCATTGCGGAGGTGCGCATGATCGAAGCCCT
GCGTGATGGCCAGCCATCCACGGCGCTCATGCAGTTCGGTGACCGGGTGA
GCATCGAGCTGGCAGGCCCGGATGGCGCCGATGTTGCCTGGGGCATCGAT
TTCGAAGGCGAAGTCGCGGTTATCACGGGGGATGTGCCCATGGGTGCGAG
CGCGGCGCAGGCCGCCGGGGCGATCCGCCTGTTCATGCTGGTCAACGATG
TGTCTTTGCGCAACCTGATCCCCGCGGAACTGGGCAAGGGCTTCGGTTTC
TTCCAGTCCAAGCCTTCCAGCGCGTTCAGCCCGGTGTGTGTGACGCCAGA
CGAGCTGGGCCCGGCCTGGGACGGCGGTCGGCTGCACCTGCCGCTGAACA
TACACTTCAATGACGCACTGTTTGGAAAGGCGAATGCCGGGGTCGACATG
ACCTTCGATTTCCCCACGCTGATCGCCCATGCGGCGAAAACCCGCCCGCT
GGTTGCCGGCACGATTATCGGCTCTGGCACCGTATCCAACAAGGGTGCCG
ACGGATCGCCGGGAAAACCGGTCACGGCCGGCGGGCTGGGTTACAGCTGC
ATTGCGGAGGTGCGCATGATCGAAGCCCTGCGTGATGGCCAGCCATCCAC
GGCGCTCATGCAGTTCGGTGACCGGGTGAGCATCGAGCTGGCAGGCCCGG
ATGGCGCC
back to top