mRNA_M-pyrifera_M_contig11317.2745.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11317.2745.1
Unique NamemRNA_M-pyrifera_M_contig11317.2745.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11317.2745.1 vs. uniprot
Match: D7G139_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G139_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.750e-33
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 QLSFGSYPPANATDDDQDLRDTWFPKARDCTCCKGYVYGCTSDICEFIGQCTCSIEEKDLDDSNSVSLGSIVSDPP 228
            +LSFGSYPPANATDD+QDLRDTWFPKARDCTCCKG+VYGCT+DIC+ +GQCTCSIEE DLD S+ V+     +D P
Sbjct:  167 ELSFGSYPPANATDDEQDLRDTWFPKARDCTCCKGFVYGCTADICDSMGQCTCSIEEADLDGSSDVASNISRTDSP 242
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BLAST of mRNA_M-pyrifera_M_contig11317.2745.1 vs. uniprot
Match: A0A836CHD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.020e-17
Identity = 30/50 (60.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   34 ATDDDQDLRDTWFPKARDCTCCKGYVYGCTSDICEFIGQCTCSIEEKDLD 183
            A + DQ+L DTWFP++RDCTCC+G+VYGC  DIC  +G+CTC++EE D++
Sbjct:  137 AAEQDQELADTWFPRSRDCTCCRGFVYGCAGDICAALGKCTCAVEESDME 186
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BLAST of mRNA_M-pyrifera_M_contig11317.2745.1 vs. uniprot
Match: A0A7S0MWD6_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MWD6_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 2.700e-7
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   58 RDTWFPKARDCTCCKGYVYGCTSDICEFIGQCTCS 162
            ++TW+  AR+CTCCKG+VYGCT+  C    +CTCS
Sbjct:  150 KETWYANARNCTCCKGFVYGCTTPACAAQEECTCS 184
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BLAST of mRNA_M-pyrifera_M_contig11317.2745.1 vs. uniprot
Match: A0A6U9L953_OXYMA (Hypothetical protein n=2 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A6U9L953_OXYMA)

HSP 1 Score: 49.3 bits (116), Expect = 3.250e-5
Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:   88 CTCCKGYVYGCTSDICEFIGQCTCSIEEKDLDDSN 192
            C CC GY+  C  D+C+ +GQCTCS+  +D DD +
Sbjct:  100 CRCCAGYILDCKGDMCQVLGQCTCSVNPEDDDDGD 134
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11317.2745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G139_ECTSI1.750e-3375.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHD1_9STRA1.020e-1760.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0MWD6_9CHLO2.700e-757.14Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A6U9L953_OXYMA3.250e-548.57Hypothetical protein n=2 Tax=Oxyrrhis marina TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11317contigM-pyrifera_M_contig11317:8772..9850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.5397155-CDS-M-pyrifera_M_contig11317:8771..88731622815646.5397155-CDS-M-pyrifera_M_contig11317:8771..8873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11317 8772..8873 +
1692277503.478999-CDS-M-pyrifera_M_contig11317:8771..88731692277503.478999-CDS-M-pyrifera_M_contig11317:8771..8873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11317 8772..8873 +
1622815646.5513299-CDS-M-pyrifera_M_contig11317:9724..98501622815646.5513299-CDS-M-pyrifera_M_contig11317:9724..9850Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11317 9725..9850 +
1692277503.489006-CDS-M-pyrifera_M_contig11317:9724..98501692277503.489006-CDS-M-pyrifera_M_contig11317:9724..9850Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11317 9725..9850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11317.2745.1prot_M-pyrifera_M_contig11317.2745.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11317 8772..9850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11317.2745.1

>prot_M-pyrifera_M_contig11317.2745.1 ID=prot_M-pyrifera_M_contig11317.2745.1|Name=mRNA_M-pyrifera_M_contig11317.2745.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
QLSFGSYPPANATDDDQDLRDTWFPKARDCTCCKGYVYGCTSDICEFIGQ
CTCSIEEKDLDDSNSVSLGSIVSDPP
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mRNA from alignment at M-pyrifera_M_contig11317:8772..9850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11317.2745.1 ID=mRNA_M-pyrifera_M_contig11317.2745.1|Name=mRNA_M-pyrifera_M_contig11317.2745.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1079bp|location=Sequence derived from alignment at M-pyrifera_M_contig11317:8772..9850+ (Macrocystis pyrifera P11B4 male)
CAGTTGTCGTTCGGCTCTTACCCCCCGGCGAATGCGACGGACGATGACCA
GGACCTGAGGGACACCTGGTTCCCCAAGGCGCGGGACTGCACGTGCTGCA
AGGTCAGCTTTTATTTGTGTTGTTCCGTCGGACCGACATCGCATCACAAA
ATCAGCTCCCCACCTTCGTTGCAGGTTTTCGTTTTTGTTGTTGTTCTGTT
TTGCGTTTTTACTGCTTGCTCTCTTTCGGGTCGTTTTTTTTTTCTTCTTG
TTTTTCTTCTGCAGGTACTTGTAACTCCTTGTTGGTCTACTGTAAGCACG
TACTGTACAAAATCATACCGGTGCAAGTAGTAAAGAGCAAGAGTACTTTT
CGTATTGTTGTAGTTTATCATTTATGGATATATATATATATATATATATA
TATGTATGTTGACCTGGTTGTATTCGTAACATGTACCGGGTGTGTGATAA
CTTTGTCTTTCGTTTGCCTTGCCACAAGGTTTCGCGTCTTGAGCCCTTTC
ATTCATCAAGGTAGGTCATGCCAGTATATCAGGGATTATAAGGTACATGG
TATGCCAATAGGGATCGGTTATTTAATAGAAGGGGACTCTCTGCCACAAT
GGCGGAGCGGCCACACTTTGTAGTAGCAGGTCGTCGTCAGGAAGAATTAC
GGAACGAATCAGGTGCGGATAGAATGAACGCACATGCCGACTGTCAGCAC
TGTATCCTAGGTGAAACGCTTTTGAAGGATCGGTCGACGTCCCAGCTACA
AAAGACAAATAAGTATGCTACGTATATAGTCCGTTGTCTCGGTTGGTTCC
TGTTAATACCACTCTTCTTCCGGTAACCCCCCTCCCTTTGCCTGTCTCGC
TCTCTCTCTCTCCGCTGCCCGTTGTTTGGCGCTCGTTGGCCTCTGGCGTT
GTTGCGTGATGTTCTTGTTCCTGTTCCTGTTGCTCTGTTGCGTCTTGTCC
TAGGGGTATGTGTACGGGTGCACTTCCGACATCTGCGAGTTCATTGGCCA
GTGCACGTGCAGCATCGAGGAGAAGGACCTGGACGACAGCAACTCGGTCT
CCTTGGGCTCGATTGTGAGCGACCCCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11317:8772..9850+

>mRNA_M-pyrifera_M_contig11317.2745.1 ID=mRNA_M-pyrifera_M_contig11317.2745.1|Name=mRNA_M-pyrifera_M_contig11317.2745.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig11317:8772..9850+ (Macrocystis pyrifera P11B4 male)
CAGTTGTCGTTCGGCTCTTACCCCCCGGCGAATGCGACGGACGATGACCA
GGACCTGAGGGACACCTGGTTCCCCAAGGCGCGGGACTGCACGTGCTGCA
AGCAGTTGTCGTTCGGCTCTTACCCCCCGGCGAATGCGACGGACGATGAC
CAGGACCTGAGGGACACCTGGTTCCCCAAGGCGCGGGACTGCACGTGCTG
CAAGGGGTATGTGTACGGGTGCACTTCCGACATCTGCGAGTTCATTGGCC
AGTGCACGTGCAGCATCGAGGAGAAGGACCTGGACGACAGCAACTCGGTC
TCCTTGGGCTCGATTGTGAGCGACCCCCCCGGGTATGTGTACGGGTGCAC
TTCCGACATCTGCGAGTTCATTGGCCAGTGCACGTGCAGCATCGAGGAGA
AGGACCTGGACGACAGCAACTCGGTCTCCTTGGGCTCGATTGTGAGCGAC
CCCCCC
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