mRNA_M-pyrifera_M_contig113126.2738.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113126.2738.1
Unique NamemRNA_M-pyrifera_M_contig113126.2738.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Match: A0A3S3MKR2_9MAGN (DeSI-like protein isoform X2 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MKR2_9MAGN)

HSP 1 Score: 84.3 bits (207), Expect = 1.770e-18
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 TVILGEASLTSFEFQDIISSLRAEWDGATYDLFKKNCCHFSDALCQRILGHGIPGWVNRSAQFATLCSCLMP 216
            ++ LG   ++  EF+  + +L +E+ G TY L  KNC HF+D +C R++G GIPGWVNR A+   LCSCL+P
Sbjct:   82 SISLGNIDMSPDEFRAFLENLASEYHGDTYHLISKNCNHFTDDVCSRLIGRGIPGWVNRLARLGALCSCLLP 153          
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Match: B9SEM6_RICCO (PPPDE domain-containing protein n=3 Tax=Ricinus communis TaxID=3988 RepID=B9SEM6_RICCO)

HSP 1 Score: 84.3 bits (207), Expect = 1.950e-18
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 TVILGEASLTSFEFQDIISSLRAEWDGATYDLFKKNCCHFSDALCQRILGHGIPGWVNRSAQFATLCSCLMP 216
            ++ LG  S+  +EF+  I S+ +E+ G TY L  KNC HF+D + +R++G GIPGWVNR A+   LCSCL+P
Sbjct:   85 SIPLGRISMPVYEFRTFIESVASEYHGDTYHLISKNCNHFTDDISERLVGKGIPGWVNRLARLGALCSCLLP 156          
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Match: UPI000772AE0F (deSI-like protein At4g17486 isoform X3 n=3 Tax=Ricinus communis TaxID=3988 RepID=UPI000772AE0F)

HSP 1 Score: 84.3 bits (207), Expect = 1.950e-18
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 TVILGEASLTSFEFQDIISSLRAEWDGATYDLFKKNCCHFSDALCQRILGHGIPGWVNRSAQFATLCSCLMP 216
            ++ LG  S+  +EF+  I S+ +E+ G TY L  KNC HF+D + +R++G GIPGWVNR A+   LCSCL+P
Sbjct:   85 SIPLGRISMPVYEFRTFIESVASEYHGDTYHLISKNCNHFTDDISERLVGKGIPGWVNRLARLGALCSCLLP 156          
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Match: A0A5N6N248_9ASTR (PPPDE domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6N248_9ASTR)

HSP 1 Score: 81.3 bits (199), Expect = 3.230e-17
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 TVILGEASLTSFEFQDIISSLRAEWDGATYDLFKKNCCHFSDALCQRILGHGIPGWVNRSAQFATLCSCLMP 216
            ++ LG  + +  EF++ I ++ +E+ G TY L  KNC HF+D +C+R++G  IPGWVNR A+   +CSCL+P
Sbjct:   85 SIPLGHVTQSPTEFREFIEAVASEYHGDTYHLISKNCNHFTDDICERLMGKKIPGWVNRLAKLGAVCSCLLP 156          
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Match: A0A443NW30_9MAGN (DeSI-like protein isoform X2 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NW30_9MAGN)

HSP 1 Score: 82.0 bits (201), Expect = 5.350e-17
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 TVILGEASLTSFEFQDIISSLRAEWDGATYDLFKKNCCHFSDALCQRILGHGIPGWVNRSAQFATLCSCLMP 216
            ++ LG+ S++  EF++ + +L AE+ G TY L  KNC HF+D +C ++ G G+P WVNR A+   LCSCL+P
Sbjct:  172 SISLGKISMSPSEFREFMENLAAEYHGDTYHLIAKNCNHFTDDVCLKLTGRGVPRWVNRLARLGALCSCLLP 243          
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Match: UPI000C1D0658 (deSI-like protein At4g17486 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D0658)

HSP 1 Score: 80.5 bits (197), Expect = 6.720e-17
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 TVILGEASLTSFEFQDIISSLRAEWDGATYDLFKKNCCHFSDALCQRILGHGIPGWVNRSAQFATLCSCLMP 216
            +V LG  ++   EF+  + SL +E+ G TY L  KNC HF+D + +R++G GIPGWVNR A+    CSCL+P
Sbjct:   94 SVPLGYLNMPPSEFRTFVESLASEYHGNTYHLISKNCNHFTDDISKRLIGKGIPGWVNRLARLGAFCSCLLP 165          
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Match: A0A699L1T3_TANCI (PPPDE domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699L1T3_TANCI)

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-16
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   46 DIISSLRAEWDGATYDLFKKNCCHFSDALCQRILGHGIPGWVNRSAQFATLCSCLMP 216
            + I ++ +E+ G TY L  KNC HF+D +CQR+ G GIPGWVNR A+   +CSCL+P
Sbjct:    1 EFIETVASEYHGDTYHLISKNCNHFTDDICQRLTGKGIPGWVNRLAKLGAVCSCLLP 57          
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Match: UPI0018AF3E8D (deSI-like protein At4g17486 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AF3E8D)

HSP 1 Score: 78.6 bits (192), Expect = 2.980e-16
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 TVILGEASLTSFEFQDIISSLRAEWDGATYDLFKKNCCHFSDALCQRILGHGIPGWVNRSAQFATLCSCLMP 216
            TV LG  +++  EF+  +  L   + G TY L  KNC HF+D +C+R+LG  IPGWVNR A+  + C+CL P
Sbjct:   79 TVWLGSTNMSRSEFRLFVEDLAVNYHGDTYHLISKNCNHFTDDVCRRLLGKPIPGWVNRLARLGSFCNCLFP 150          
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Match: A0A161WZK3_DAUCS (PPPDE domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161WZK3_DAUCS)

HSP 1 Score: 77.8 bits (190), Expect = 6.890e-16
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 TVILGEASLTSFEFQDIISSLRAEWDGATYDLFKKNCCHFSDALCQRILGHGIPGWVNRSAQFATLCSCLMP 216
            +V+LG   ++  EF+  + +L  ++ G TY L  KNC HF++ +C R+ G GIPGWVNR A+  + C+CL+P
Sbjct:   84 SVLLGTTDMSHSEFRSFMENLSGKFHGDTYHLIAKNCNHFTNEVCLRLTGKGIPGWVNRLAKLGSCCNCLLP 155          
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Match: A0A7S1CA67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA67_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.120e-15
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    4 VILGEASLTSFEFQDIISSLRAEWDGATYDLFKKNCCHFSDALCQRILGHGIPGWVNRSAQFATLCSCLMP 216
            V LG+  +   E + ++S +R +W G  Y++   NC  F DALC+ +LGHG+PGWVNR A   +  SCL+P
Sbjct:  141 VYLGDVVMGYREVEAVVSGMRGDWGGDAYNVLTNNCNSFCDALCRNLLGHGLPGWVNRLAYLGSSVSCLLP 211          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113126.2738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3S3MKR2_9MAGN1.770e-1847.22DeSI-like protein isoform X2 n=1 Tax=Cinnamomum mi... [more]
B9SEM6_RICCO1.950e-1848.61PPPDE domain-containing protein n=3 Tax=Ricinus co... [more]
UPI000772AE0F1.950e-1848.61deSI-like protein At4g17486 isoform X3 n=3 Tax=Ric... [more]
A0A5N6N248_9ASTR3.230e-1744.44PPPDE domain-containing protein n=1 Tax=Mikania mi... [more]
A0A443NW30_9MAGN5.350e-1745.83DeSI-like protein isoform X2 n=1 Tax=Cinnamomum mi... [more]
UPI000C1D06586.720e-1747.22deSI-like protein At4g17486 n=1 Tax=Olea europaea ... [more]
A0A699L1T3_TANCI1.400e-1652.63PPPDE domain-containing protein (Fragment) n=1 Tax... [more]
UPI0018AF3E8D2.980e-1645.83deSI-like protein At4g17486 n=1 Tax=Dioscorea caye... [more]
A0A161WZK3_DAUCS6.890e-1643.06PPPDE domain-containing protein n=1 Tax=Daucus car... [more]
A0A7S1CA67_9STRA2.120e-1543.66Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113126contigM-pyrifera_M_contig113126:353..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.7
Seed ortholog evalue1.9e-14
Seed eggNOG ortholog3988.XP_002524445.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.deSI-like protein
EggNOG OGs37RMT@33090,3GF4B@35493,4JE18@91835,KOG0324@1,KOG0324@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.0784237-CDS-M-pyrifera_M_contig113126:352..5681622815646.0784237-CDS-M-pyrifera_M_contig113126:352..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113126 353..568 -
1692277503.2614703-CDS-M-pyrifera_M_contig113126:352..5681692277503.2614703-CDS-M-pyrifera_M_contig113126:352..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113126 353..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113126.2738.1prot_M-pyrifera_M_contig113126.2738.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113126 353..568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113126.2738.1

>prot_M-pyrifera_M_contig113126.2738.1 ID=prot_M-pyrifera_M_contig113126.2738.1|Name=mRNA_M-pyrifera_M_contig113126.2738.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
TVILGEASLTSFEFQDIISSLRAEWDGATYDLFKKNCCHFSDALCQRILG
HGIPGWVNRSAQFATLCSCLMP
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mRNA from alignment at M-pyrifera_M_contig113126:353..568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113126.2738.1 ID=mRNA_M-pyrifera_M_contig113126.2738.1|Name=mRNA_M-pyrifera_M_contig113126.2738.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig113126:353..568- (Macrocystis pyrifera P11B4 male)
ACTGTGATCTTGGGAGAAGCATCTTTAACTAGTTTCGAATTTCAAGATAT CATCTCAAGCTTGAGGGCAGAGTGGGATGGGGCTACGTACGATCTCTTCA AGAAAAACTGCTGTCACTTCTCCGATGCCTTGTGCCAACGCATTCTAGGC CATGGTATTCCTGGGTGGGTGAACCGCAGTGCTCAATTTGCCACCTTATG TTCCTGTCTCATGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113126:353..568-

>mRNA_M-pyrifera_M_contig113126.2738.1 ID=mRNA_M-pyrifera_M_contig113126.2738.1|Name=mRNA_M-pyrifera_M_contig113126.2738.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig113126:353..568- (Macrocystis pyrifera P11B4 male)
ACTGTGATCTTGGGAGAAGCATCTTTAACTAGTTTCGAATTTCAAGATAT
CATCTCAAGCTTGAGGGCAGAGTGGGATGGGGCTACGTACGATCTCTTCA
AGAAAAACTGCTGTCACTTCTCCGATGCCTTGTGCCAACGCATTCTAGGC
CATGGTATTCCTGGGTGGGTGAACCGCAGTGCTCAATTTGCCACCTTATG
TTCCTGTCTCATGCCTACTGTGATCTTGGGAGAAGCATCTTTAACTAGTT
TCGAATTTCAAGATATCATCTCAAGCTTGAGGGCAGAGTGGGATGGGGCT
ACGTACGATCTCTTCAAGAAAAACTGCTGTCACTTCTCCGATGCCTTGTG
CCAACGCATTCTAGGCCATGGTATTCCTGGGTGGGTGAACCGCAGTGCTC
AATTTGCCACCTTATGTTCCTGTCTCATGCCT
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