mRNA_M-pyrifera_M_contig113120.2737.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113120.2737.1
Unique NamemRNA_M-pyrifera_M_contig113120.2737.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113120.2737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113120contigM-pyrifera_M_contig113120:1..579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size558
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.025838-CDS-M-pyrifera_M_contig113120:0..5581622815646.025838-CDS-M-pyrifera_M_contig113120:0..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113120 1..558 -
1692277503.23774-CDS-M-pyrifera_M_contig113120:0..5581692277503.23774-CDS-M-pyrifera_M_contig113120:0..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113120 1..558 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.0394616-UTR-M-pyrifera_M_contig113120:558..5791622815646.0394616-UTR-M-pyrifera_M_contig113120:558..579Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113120 559..579 -
1692277503.248062-UTR-M-pyrifera_M_contig113120:558..5791692277503.248062-UTR-M-pyrifera_M_contig113120:558..579Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113120 559..579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113120.2737.1prot_M-pyrifera_M_contig113120.2737.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113120 1..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113120.2737.1

>prot_M-pyrifera_M_contig113120.2737.1 ID=prot_M-pyrifera_M_contig113120.2737.1|Name=mRNA_M-pyrifera_M_contig113120.2737.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
MLASMFGQNREDCGDINLDWYYNWRADLDAASGFAAWVMAEEKIRLRDYV
VERLNDHPAWDSFLNGIWDVAQKTIGASSEEGKEDWIEMELNGMLSNLRL
RPASPQDILRQFKEFYLDESPHTDFVTDKLPMILNELRGHERWDDWVEAQ
HNGDKDLAESVLGKMWDTAVKQAGHEFIKPEHFISY
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mRNA from alignment at M-pyrifera_M_contig113120:1..579-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113120.2737.1 ID=mRNA_M-pyrifera_M_contig113120.2737.1|Name=mRNA_M-pyrifera_M_contig113120.2737.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig113120:1..579- (Macrocystis pyrifera P11B4 male)
GAACCACTATTCATCGCAGACATGCTCGCCAGCATGTTTGGGCAGAATCG
AGAAGACTGTGGAGATATAAATCTTGATTGGTACTACAACTGGCGGGCTG
ATTTAGACGCAGCATCGGGGTTTGCTGCGTGGGTCATGGCTGAAGAAAAA
ATTCGATTGCGAGACTACGTTGTTGAAAGGCTGAATGATCATCCAGCTTG
GGATTCATTTCTTAACGGAATTTGGGATGTCGCCCAAAAGACGATTGGGG
CGAGCAGCGAAGAGGGCAAGGAGGATTGGATCGAAATGGAACTGAACGGA
ATGCTCAGCAACCTGCGGTTGCGCCCCGCAAGTCCGCAAGACATTCTTCG
CCAATTTAAAGAGTTCTACCTTGACGAGTCTCCGCATACGGATTTCGTCA
CTGACAAGCTGCCAATGATTCTGAATGAATTGCGGGGCCATGAAAGATGG
GATGATTGGGTGGAGGCACAACACAATGGAGACAAGGATTTGGCAGAAAG
CGTCTTAGGAAAAATGTGGGACACTGCTGTTAAGCAAGCTGGACACGAAT
TCATCAAGCCTGAGCATTTCATCTCCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113120:1..579-

>mRNA_M-pyrifera_M_contig113120.2737.1 ID=mRNA_M-pyrifera_M_contig113120.2737.1|Name=mRNA_M-pyrifera_M_contig113120.2737.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig113120:1..579- (Macrocystis pyrifera P11B4 male)
ATGCTCGCCAGCATGTTTGGGCAGAATCGAGAAGACTGTGGAGATATAAA
TCTTGATTGGTACTACAACTGGCGGGCTGATTTAGACGCAGCATCGGGGT
TTGCTGCGTGGGTCATGGCTGAAGAAAAAATTCGATTGCGAGACTACGTT
GTTGAAAGGCTGAATGATCATCCAGCTTGGGATTCATTTCTTAACGGAAT
TTGGGATGTCGCCCAAAAGACGATTGGGGCGAGCAGCGAAGAGGGCAAGG
AGGATTGGATCGAAATGGAACTGAACGGAATGCTCAGCAACCTGCGGTTG
CGCCCCGCAAGTCCGCAAGACATTCTTCGCCAATTTAAAGAGTTCTACCT
TGACGAGTCTCCGCATACGGATTTCGTCACTGACAAGCTGCCAATGATTC
TGAATGAATTGCGGGGCCATGAAAGATGGGATGATTGGGTGGAGGCACAA
CACAATGGAGACAAGGATTTGGCAGAAAGCGTCTTAGGAAAAATGTGGGA
CACTGCTGTTAAGCAAGCTGGACACGAATTCATCAAGCCTGAGCATTTCA
TCTCCTACATGCTCGCCAGCATGTTTGGGCAGAATCGAGAAGACTGTGGA
GATATAAATCTTGATTGGTACTACAACTGGCGGGCTGATTTAGACGCAGC
ATCGGGGTTTGCTGCGTGGGTCATGGCTGAAGAAAAAATTCGATTGCGAG
ACTACGTTGTTGAAAGGCTGAATGATCATCCAGCTTGGGATTCATTTCTT
AACGGAATTTGGGATGTCGCCCAAAAGACGATTGGGGCGAGCAGCGAAGA
GGGCAAGGAGGATTGGATCGAAATGGAACTGAACGGAATGCTCAGCAACC
TGCGGTTGCGCCCCGCAAGTCCGCAAGACATTCTTCGCCAATTTAAAGAG
TTCTACCTTGACGAGTCTCCGCATACGGATTTCGTCACTGACAAGCTGCC
AATGATTCTGAATGAATTGCGGGGCCATGAAAGATGGGATGATTGGGTGG
AGGCACAACACAATGGAGACAAGGATTTGGCAGAAAGCGTCTTAGGAAAA
ATGTGGGACACTGCTGTTAAGCAAGCTGGACACGAATTCATCAAGCCTGA
GCATTTCATCTCCTAC
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