mRNA_M-pyrifera_M_contig11310.2731.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11310.2731.1
Unique NamemRNA_M-pyrifera_M_contig11310.2731.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11310.2731.1 vs. uniprot
Match: D8LF43_ECTSI (RPA_interact_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF43_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 4.900e-48
Identity = 88/138 (63.77%), Postives = 105/138 (76.09%), Query Frame = 1 
Query:  325 MADGDD-GWDD---SSDVSEEARLLSPDEYLEMMQYIEGLCREEDLRAEAEVVQEYELTKKMEEEAMESAILSGLDYDENGQQSNAVLCPVCKRDYLLQAGPPSASIVCACGFRLDTADDHLGLEHLRTQLAETYDQH 726
            M D D+ GW D   + D  +E  LLSPDEYLEMMQYIE  C+EED RAEA V+++YELT+++EEE +E A+ S  D + NGQ  +AVLCPVCKRDYLL  GPPSASIVCACGFRLDT  D LGLEH + QLA+TY +H
Sbjct:    1 MVDEDELGWGDGGGAEDDCDEEHLLSPDEYLEMMQYIEEACKEEDFRAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQD-DAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEH 137
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BLAST of mRNA_M-pyrifera_M_contig11310.2731.1 vs. uniprot
Match: A0A6H5KTE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.840e-8
Identity = 59/156 (37.82%), Postives = 68/156 (43.59%), Query Frame = 1 
Query:   34 SQSQSHLMALEEETA-YLNACPGGRCTGTPQRAAXXXXXXXXXXXXRAGTPASAAGHS--------PFTPGSGDLDGEYQLYAGVAGGQRTPDKGGGVGEEWRPTPMADGDD-GWDD---SSDVSEEARLLSPDEYLEMMQYIEGLCREEDLRAEA 462
            S+S S L A+EEE A YLNAC  G+     QR              R GT A  A  S         F  G+ D D     +                        M D D+ GW D   + D  +E  LLSPDEYLEMMQYIE  C+EEDLRAEA
Sbjct:  170 SESLSFLSAIEEENASYLNACARGQGGSLQQRG------------PRDGTAAELAPMSISFREQTQGFVEGNNDEDDALMAHDDGHAQXXXXXXXXXXXXXXXXXXMVDEDELGWGDGGGAEDCCDEENLLSPDEYLEMMQYIEEACKEEDLRAEA 313
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BLAST of mRNA_M-pyrifera_M_contig11310.2731.1 vs. uniprot
Match: A0A835YX80_9STRA (Replication protein A interacting C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX80_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.220e-8
Identity = 44/123 (35.77%), Postives = 58/123 (47.15%), Query Frame = 1 
Query:  379 RLLSPDEYLEMMQYIEGLCREEDLRAEAEVVQEYELTKKMEEEAMESAILSGLDY------DENGQQSNAVLCPVCKRDYLLQAGPPSASIVCACGFRLDTADDHLGLEHLRTQLAETYDQHR 729
            R L+P+EY +MM +IE     E  RA+A                      + L        D  G + + VLCPVCK  +LLQ G   A+I+C CGFRL T  + + L  LR  LAE +  HR
Sbjct:    3 RKLTPEEYTDMMLFIEQALAAELARADASXXXXXXXXXXXXXXXXXXXXXAALARAAAEAEDGRGWRDDEVLCPVCKGGWLLQHG---ATIMCTCGFRLQTDGEGMQLGVLRQALAEVFTDHR 122
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BLAST of mRNA_M-pyrifera_M_contig11310.2731.1 vs. uniprot
Match: D8R075_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R075_SELML)

HSP 1 Score: 53.1 bits (126), Expect = 7.980e-5
Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = 1 
Query:  331 DGDDGWDDSSDVSEEARLLSPDEYLEMMQYIEGLCRE----EDLRAEAEVVQEYELTKKMEEEAMESAILSGLDYDENGQQSNAVLCPVCKRDYLLQAGPPSASIVCACGFRLDTADDH----LGLEHLRTQLAETYDQH 726
            DGD  W+ SS  S+    LSP EY ++M  ++ +  +    E  +   + +++YE    +E+ ++ S +       E   Q N VLCP+C+R +LL       SI C+    LD         +G+E +R +LAE  DQH
Sbjct:   69 DGDMLWNYSSAGSKSPSELSPQEYEDLMLAMQAVLYQGTYPEQQQHAIDDLEDYEKATALEDSSLASLL-------EQNHQENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQH 198
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11310.2731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF43_ECTSI4.900e-4863.77RPA_interact_C domain-containing protein n=1 Tax=E... [more]
A0A6H5KTE2_9PHAE3.840e-837.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YX80_9STRA7.220e-835.77Replication protein A interacting C-terminal-domai... [more]
D8R075_SELML7.980e-530.71Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11310contigM-pyrifera_M_contig11310:5193..9660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRPA-interacting protein
Ec32 orthologEc-06_001600.1
Exons3
Model size732
Cds size732
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11310.2731.1prot_M-pyrifera_M_contig11310.2731.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11310 5193..9660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.689579-CDS-M-pyrifera_M_contig11310:5192..56571622815645.689579-CDS-M-pyrifera_M_contig11310:5192..5657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11310 5193..5657 +
1692277503.0550387-CDS-M-pyrifera_M_contig11310:5192..56571692277503.0550387-CDS-M-pyrifera_M_contig11310:5192..5657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11310 5193..5657 +
1622815645.7010434-CDS-M-pyrifera_M_contig11310:8744..88371622815645.7010434-CDS-M-pyrifera_M_contig11310:8744..8837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11310 8745..8837 +
1692277503.0728676-CDS-M-pyrifera_M_contig11310:8744..88371692277503.0728676-CDS-M-pyrifera_M_contig11310:8744..8837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11310 8745..8837 +
1622815645.7123203-CDS-M-pyrifera_M_contig11310:9486..96601622815645.7123203-CDS-M-pyrifera_M_contig11310:9486..9660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11310 9487..9660 +
1692277503.084509-CDS-M-pyrifera_M_contig11310:9486..96601692277503.084509-CDS-M-pyrifera_M_contig11310:9486..9660Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11310 9487..9660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11310.2731.1

>prot_M-pyrifera_M_contig11310.2731.1 ID=prot_M-pyrifera_M_contig11310.2731.1|Name=mRNA_M-pyrifera_M_contig11310.2731.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=244bp
QEEPWEESKSESQSQSHLMALEEETAYLNACPGGRCTGTPQRAAAAAAAA
TVAGGGRAGTPASAAGHSPFTPGSGDLDGEYQLYAGVAGGQRTPDKGGGV
GEEWRPTPMADGDDGWDDSSDVSEEARLLSPDEYLEMMQYIEGLCREEDL
RAEAEVVQEYELTKKMEEEAMESAILSGLDYDENGQQSNAVLCPVCKRDY
LLQAGPPSASIVCACGFRLDTADDHLGLEHLRTQLAETYDQHR*
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mRNA from alignment at M-pyrifera_M_contig11310:5193..9660+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11310.2731.1 ID=mRNA_M-pyrifera_M_contig11310.2731.1|Name=mRNA_M-pyrifera_M_contig11310.2731.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4468bp|location=Sequence derived from alignment at M-pyrifera_M_contig11310:5193..9660+ (Macrocystis pyrifera P11B4 male)
CAGGAAGAACCCTGGGAGGAGTCTAAGAGCGAGTCGCAGTCGCAATCGCA
CCTAATGGCGTTGGAGGAAGAAACCGCCTACTTGAACGCCTGCCCGGGTG
GACGATGCACTGGCACACCCCAACGCGCCGCCGCCGCAGCAGCAGCAGCA
ACAGTAGCAGGGGGCGGGAGGGCTGGCACCCCCGCTAGCGCCGCCGGCCA
CTCCCCCTTTACGCCAGGGTCGGGAGACTTGGACGGAGAATACCAACTCT
ACGCGGGAGTAGCAGGCGGTCAGCGCACTCCTGACAAGGGCGGTGGGGTG
GGGGAGGAATGGCGGCCGACCCCCATGGCGGATGGGGACGACGGGTGGGA
CGACAGCAGCGATGTCTCTGAAGAGGCGCGCTTGCTGTCGCCCGACGAAT
ACCTGGAGATGATGCAGTACATTGAGGGGCTTTGCAGGGAGGAAGACTTG
CGAGCGGAGGCGGAGGTGAGCTATGGTCTATCAATATACATCTCCCTACG
CCGTCTCTGGGTGCTTTTTGGGGATGTCGAGATTGCACGTTTTTACGCTT
GCGTTACTGCCGTCCAAAGATGATACCGGTACACCTGGTTTCTGGAATGA
GGGCGTGTCTTAACTCCCTCCAAGGAGCACGGGAATGAGCGGAACGGAAC
GAGGCTGTTCGTGGTCATGCGTTCCTTTCCTATCTAAAAAAACGCGTTTG
GGTCAATGCAGAATCCTGGGCCTTGCCAGTCGAATCAGTCCGAACGGTAT
CTTTGGAACATGCCACGGCTAATTGGTGTCCATGTCCATCTTCGATGGTG
TCCATCTACATCAAAGAGTATGCTATTTGTTCCCGTTCGGTCGGGCCGTT
CGGTCCTCCCAAACAAGAAAAAGGGGTGCAACACTTCTTCTTCCTCTTCC
TAGATGTACTGTTTTTCTCGGGCCGCACTGAACCTAATTCCCACAACCAA
TCGGCACCAGTTCATGCGGCAAATAATATTCCATTCGGTTCGTTCCAATG
CTCTCTGGGGGGGTTAAGACACGCCCTGAGACCAGGTGAGGTTTCTGGTA
CTGGATTATATGTCGAGATCGAAGGTCAATCGTCGCGTGACTGCGGGTGT
GCGAGCCGCGAGCTGTGTCTTTCTTCGTCTAGTTTGTGTGCAGCATGATT
TAGCAGCTATTAATAGTGCTTGTGTGTGTTCTTCACACTAAACCGTTCTT
TCTACCCGTCGACCTCCAGCACAAGCAGTTAGCGCGCGCGTTCACCAGGT
ACTGCGGAGACGGAGTACGGAGCAATCACGTGGGTTGACGGTCTGGGTGG
AAGGTCTAGTTTTGAGGCGTGAAGAGGTCTCTTCACGACGAATTGATACA
CCTATAGCAGTAGTAGGTCATGTTTTATTCGATGCTTGGAAAAGAGTGAG
GGCTGCCACCATGCCACCATCGCGTGGGCCAGCTGTGCCTTCTGTAGAAG
TACGCTGTTCGGCGTACGCTCTTGGAACGACCCTAGCACTTGAGTCTTTG
TTGCTGCTGTTCTTTCTCACGCGGAGGGTTGCGTGACATACCTGGTACGT
GATAGTTCTGTCCGCTTTTTTGCGCCTGCGGTATCCACCTACGCCTTCAT
CAGAATCATCTATAGCAGTAGTATTGATGGGTGTTGGAAGGTGGGGCTGT
TTCCTATGCGGTTCGATTTCGACCTTCAGATTTGTATTTTTCGATTAAAA
AAATGCCATCATCTGCTCGTGCAATCCGAATGTCCAAATCGGACGGATTT
GTTCTCGATTCGAGAATCCGATGGCCCAAGTCGTCGGATTTTGGCCCAAA
CTCCGACAACTTGGGCAATCAGATTATCATATCGAATAATGGCATGACAT
CTAAATCCAGGATGTTATCCACGCAAGCAAGCAGCAGCAGAACGATCAAT
GGGTTGGATGGTGACGCAGCTCTTGAGCGACGTTGCTTCGCTCCCGACAC
GCAGTCGGCGGTCGGCGCGTCTCTCCGTGGTCAGACTACTGTCGGCTGGC
GTCGGTCCCAGAGGCCAAGACAAGCGCACTCGGCGCACACCTCTCCGTGG
GTACGTACACGTAGACTACAGCAGCAATGGTCAGTCAGTCAGTGTGCTGG
GCTCGGATGCTTTATTGTGTCAAAATACCAAATGCCAAGACAGGTTGACC
CGAGCGCACTCGGCACGTCTCTTCGCTGCCAGACCACAGGCATTCAGCGT
GGGCTCCGACGCTTGGGTCCTACGCGTAGTGCAGCGCGCTCGGCGCGTCT
CCTCGCGGCGCCAGATCACAACAACAGTAGTTGGTCTCTGCGTTTGCTCG
AATCGCTAGACGCACAATACTTTTCTTTTCGCATAGGAAGACTGTTTCGA
TTTGCGACCTTCACAGCTGAAAGTTCGATCGGGTCAAAAGCCAAAGCAAA
AAAATCTGAACCGCATAGGAAACAGGCGAAGATTGAGCATTTTTTGCTTT
CAGCCTACTCTACTGCACCCCCCACCACCCCCCCCCAGTTAATACGTAGC
TGGACCAAACCCGTTTTTTGAATACATATTTTCGTCGCTCAGTCTCCAAA
AAACGGTGTACGCACATACTACAGCAGTATGTGGTGTCAGACCCTACCTG
TTGGTAAAAAAATAATGTGATACCGTGCGAATGGTGATAACTGCGGGTGT
GCCCATATATACGTAAGATCGACAGTGGGCCGAACCTTATAATAAACAAA
TTCTTAGACTATTGATAGACACTACGTACGTGGACCACTTGTAGGCAAAT
TGGACGCGTGAAAAGGCCACCTGGCGATTGATAAAGAGAGTGGACCCTCT
TGGCAACTCCCCGGTTACTCGGCGGGTATGCCCGGACAAGTCACGCCTCC
TATAATACCCGTTTGACGGATGGATATGATCCGATCTCAAAGCAGTTGTA
CCCGTTACCCGGACCCGAACAGCCAAGAGCCCCGGATCTGCAGGATGTAT
GCATGTTCTTATGTTCATCTTTATGTGTGCTGTTGCGGGCTCGGGGCATG
GGGTTTCGCATCCGAATTGGCATGGTTTGCGTACCCACCATTGGGCGGTC
GCGGGCGATGGCAGGCCCGACAAATGAAGAATCGCATCTGTGCTGCCGAT
GGAGCACGCGTTACATGCCGTTGCTTCGTCGGTTTTCTCTCTTTGTCGGC
AATTTCGCTGCTGAATGCTACCCACAACGATGAATGTCTAGTAGTTTCAA
TTTCGTCACGCAGGTTGACTGAAGTTCTTCTGTTGGCCCTAGACCGTTTC
CTGGGGAGTTGCTCGCTTGGCTCATGCTGGGATCTGGCGGTGTTTTGTTT
CGCACGCGATCGGGAATAACCGTTGATTTGTTTCACTTTGCGTCGGCGGC
TGATGGTGCTTCTTTCGTGAAATAAAAATCACCGCCTGGTTGCTTGTCGT
GCGTCAACACGTGGATTGAGCCGGCTATGGATCTTCGCTCGGCGGCTGAT
GATTATGCTTCTGTCATTACATAACAATCGCTGTCTGTATGCTTGCCGTT
CGTCAACATGTGGATTGGACCGGGCAATGATATTCGGGGCTTTGGTGGAA
AGGTCGTTCAGGAGTATGAACTCACTAAGAAGATGGAGGAGGAGGCGATG
GAGTCTGCAATATTGTCGGGCCTCGATTACGACGAGAACGGCCAGGTCAG
CGCTCCGTCTTGAAGCCCGCGCGAATTTTCAGACGGTACCGACAAAGTGA
AAGCTGTGTTTATTCCAAATCCGCTCTGTGAACTATGAAAACTACGAAAC
CGCCAGGTCTATGGAAACCAATAACCAACTACTGTATGCAATTGTGAAAC
CGCCATTGTTTTTATAGAAACCCACTGCTGTATGAAACCGTCGGTTGCTG
CGGAACGTTGAGTTTCACTCAAGTTGGTTGAAATCACAGCAGATGCATTA
TTATAACCGAGACCAATCAAGCAAAGCGCGAATGCAGGAGCAGCGCAAGA
AAATGCTAGCGCAGCTGAAAATTCGGAAGCCAGGCGCAGGAGGGTGGAAC
TCCATCTAACCGTACGCACGAGAATTCAAAACTATGTTCGATTTTAATTT
TAATGTTATAACGAGCAGGTGCGGCTTGAGCTTCAGTGCTAAGATGCCAT
CGACTAGCAAATGGCTGGCCTCATCTCCGGCAGGTAGCCTTTGGAACTGA
CGCAATAGCTTGCGCTTGCCCTCGAAAGCCGCTTCACATCGTGGTCAGCT
TCTTCGAAGCGAGGCGATGAGACGGTACACACGCTTATATTATGACCCTA
CCCGCTGTTCTGGTTTTCGAATGTCGCGTACAACGTGGCGTGAGCAGAGT
AACGCGGTGCTATGCCCCGTGTGCAAGCGGGACTACCTCCTACAGGCTGG
TCCGCCGTCGGCTTCTATAGTCTGCGCTTGCGGCTTCCGATTGGACACCG
CCGACGACCACCTCGGCCTGGAACACCTTCGAACTCAGTTGGCGGAGACG
TACGACCAGCACAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11310:5193..9660+

>mRNA_M-pyrifera_M_contig11310.2731.1 ID=mRNA_M-pyrifera_M_contig11310.2731.1|Name=mRNA_M-pyrifera_M_contig11310.2731.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1464bp|location=Sequence derived from alignment at M-pyrifera_M_contig11310:5193..9660+ (Macrocystis pyrifera P11B4 male)
CAGGAAGAACCCTGGGAGGAGTCTAAGAGCGAGTCGCAGTCGCAATCGCA
CCTAATGGCGTTGGAGGAAGAAACCGCCTACTTGAACGCCTGCCCGGGTG
GACGATGCACTGGCACACCCCAACGCGCCGCCGCCGCAGCAGCAGCAGCA
ACAGTAGCAGGGGGCGGGAGGGCTGGCACCCCCGCTAGCGCCGCCGGCCA
CTCCCCCTTTACGCCAGGGTCGGGAGACTTGGACGGAGAATACCAACTCT
ACGCGGGAGTAGCAGGCGGTCAGCGCACTCCTGACAAGGGCGGTGGGGTG
GGGGAGGAATGGCGGCCGACCCCCATGGCGGATGGGGACGACGGGTGGGA
CGACAGCAGCGATGTCTCTGAAGAGGCGCGCTTGCTGTCGCCCGACGAAT
ACCTGGAGATGATGCAGTACATTGAGGGGCTTTGCAGGGAGGAAGACTTG
CGAGCGGAGGCGGAGCAGGAAGAACCCTGGGAGGAGTCTAAGAGCGAGTC
GCAGTCGCAATCGCACCTAATGGCGTTGGAGGAAGAAACCGCCTACTTGA
ACGCCTGCCCGGGTGGACGATGCACTGGCACACCCCAACGCGCCGCCGCC
GCAGCAGCAGCAGCAACAGTAGCAGGGGGCGGGAGGGCTGGCACCCCCGC
TAGCGCCGCCGGCCACTCCCCCTTTACGCCAGGGTCGGGAGACTTGGACG
GAGAATACCAACTCTACGCGGGAGTAGCAGGCGGTCAGCGCACTCCTGAC
AAGGGCGGTGGGGTGGGGGAGGAATGGCGGCCGACCCCCATGGCGGATGG
GGACGACGGGTGGGACGACAGCAGCGATGTCTCTGAAGAGGCGCGCTTGC
TGTCGCCCGACGAATACCTGGAGATGATGCAGTACATTGAGGGGCTTTGC
AGGGAGGAAGACTTGCGAGCGGAGGCGGAGGTCGTTCAGGAGTATGAACT
CACTAAGAAGATGGAGGAGGAGGCGATGGAGTCTGCAATATTGTCGGGCC
TCGATTACGACGAGAACGGCCAGGTCGTTCAGGAGTATGAACTCACTAAG
AAGATGGAGGAGGAGGCGATGGAGTCTGCAATATTGTCGGGCCTCGATTA
CGACGAGAACGGCCAGCAGAGTAACGCGGTGCTATGCCCCGTGTGCAAGC
GGGACTACCTCCTACAGGCTGGTCCGCCGTCGGCTTCTATAGTCTGCGCT
TGCGGCTTCCGATTGGACACCGCCGACGACCACCTCGGCCTGGAACACCT
TCGAACTCAGTTGGCGGAGACGTACGACCAGCACAGGTGACAGAGTAACG
CGGTGCTATGCCCCGTGTGCAAGCGGGACTACCTCCTACAGGCTGGTCCG
CCGTCGGCTTCTATAGTCTGCGCTTGCGGCTTCCGATTGGACACCGCCGA
CGACCACCTCGGCCTGGAACACCTTCGAACTCAGTTGGCGGAGACGTACG
ACCAGCACAGGTGA
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