mRNA_M-pyrifera_M_contig1131.2728.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Match: D7FJL2_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL2_ECTSI) HSP 1 Score: 225 bits (573), Expect = 6.440e-65 Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1
Query: 1 LTDRLQTAVAQVVTIARSLGRLQRDCGLPVDPEENIKLNLNFGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYV 360
LTDRLQTAVAQV+ IARSLGRLQRD GLPVDPEENIKLNLN GLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYV
Sbjct: 1510 LTDRLQTAVAQVLKIARSLGRLQRDHGLPVDPEENIKLNLNLGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYV 1629
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Match: A0A835Z0G0_9STRA (DEAD/DEAH box RNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G0_9STRA) HSP 1 Score: 169 bits (428), Expect = 6.840e-50 Identity = 86/120 (71.67%), Postives = 97/120 (80.83%), Query Frame = 1
Query: 1 LTDRLQTAVAQVVTIARSLGRLQRDCGLPVDPEENIKLNLNFGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYV 360
LT RLQ A A V IAR LG LQ GLP P++ NLNFGLVDVVY+WARGVPF EI QITLVQEG++VR +TRLDEL REVRNAARV+GDPTLYRKMEATSQLI+R ++F ASLY+
Sbjct: 106 LTPRLQAARASVEGIARGLGALQAAHGLPTSPDDFAAQNLNFGLVDVVYDWARGVPFAEICQITLVQEGTIVRTVTRLDELLREVRNAARVVGDPTLYRKMEATSQLIRRGVIFCASLYL 225
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Match: A0A7S1GQ35_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQ35_CYCTE) HSP 1 Score: 155 bits (392), Expect = 3.580e-44 Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 1
Query: 1 LTDRLQTAVAQVVTIARSLGRLQRDCGLPVDPEENIKLNLNFGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYVA 363
L D L ++ TIA +LG+LQ++ GL VDPEE + +L FGLV VVYEWA GVPF I ++TLVQEGS+VR ITRLDELCR+ RN ARV+G+PTLYRKMEA S IKRDIVFA+SLYV+
Sbjct: 128 LPDTLVECCERMKTIAVNLGQLQKEHGLEVDPEEYCEASLKFGLVHVVYEWALGVPFSNICELTLVQEGSIVRCITRLDELCRDFRNCARVVGNPTLYRKMEAASTAIKRDIVFASSLYVS 248
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Match: A0A7S2WR62_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WR62_9STRA) HSP 1 Score: 149 bits (375), Expect = 6.810e-43 Identity = 73/121 (60.33%), Postives = 94/121 (77.69%), Query Frame = 1
Query: 1 LTDRLQTAVAQVVTIARSLGRLQRDCGLPVDPEENIKLNLNFGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYVA 363
L +RL+ ++ IA LG+LQ++ GL VDP++ + ++ FGLV VVYEWA G+PF I +T+VQEGS+VR ITRLDELCRE+RN RV+G+PTLYRKMEA S IKRDIVFA+SLYV+
Sbjct: 27 LPERLRDTCEKMKLIAIHLGKLQKEHGLEVDPKDYCENSMKFGLVHVVYEWALGIPFSNICALTMVQEGSIVRCITRLDELCREIRNCTRVVGNPTLYRKMEAASVAIKRDIVFASSLYVS 147
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Match: A0A7S0CA57_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA57_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.600e-41 Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1
Query: 1 LTDRLQTAVAQVVTIARSLGRLQRDCGLPVDPEENIKLNLNFGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYVA 363
L +RL + Q+ IA LGR+Q++ GL +DP E +L GLV VVYEWA GVPF I ++TLVQEGS+VR ITRLDELCREVRN ARV+G+PTLYR+MEA S IKRDIVFA+SLYV+
Sbjct: 219 LPERLSSCCKQMRQIAIQLGRMQQEHGLSIDPNEYCAESLKMGLVHVVYEWALGVPFQRICELTLVQEGSIVRTITRLDELCREVRNCARVVGNPTLYRRMEAASVAIKRDIVFASSLYVS 339
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Match: A0A418AJ68_9STRA (DSHCT domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AJ68_9STRA) HSP 1 Score: 151 bits (381), Expect = 3.040e-41 Identity = 76/121 (62.81%), Postives = 92/121 (76.03%), Query Frame = 1
Query: 1 LTDRLQTAVAQVVTIARSLGRLQRDCGLPVDPEENIKLNLNFGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYVA 363
LT RL A V IA SLG +Q + L +DP E +K LNFGL++VVYEW+RG+PF I Q+T V EGS+VR +TRLDE+CREVRNAARVIGDP LYRKME S+ IKRD+VFA SLY++
Sbjct: 248 LTPRLMDAQKTVQAIATSLGLIQLEAQLEIDPHEYVKSTLNFGLMEVVYEWSRGMPFQSICQLTDVPEGSIVRCMTRLDEVCREVRNAARVIGDPRLYRKMEIASESIKRDVVFATSLYLS 368
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Match: A0A812VLV3_SYMMI (SKI2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VLV3_SYMMI) HSP 1 Score: 147 bits (371), Expect = 9.010e-41 Identity = 78/125 (62.40%), Postives = 95/125 (76.00%), Query Frame = 1
Query: 1 LTDRLQTAVAQVVTIARSLGRLQRDCGLPVDP----EENIKLNLNFGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYVA 363
LT RL+ A +Q V++A +L RLQ + G+ + E + +LNFGL VYEWARGVPF EIT +T EGS+VR ITRLDELCR+ RNAARV+G+P+LYRKMEATSQ IKRDIVFAASLYV+
Sbjct: 145 LTSRLELARSQEVSLASALLRLQEESGINMSALGGRGEGVAASLNFGLAAPVYEWARGVPFQEITGMTCTHEGSIVRTITRLDELCRDFRNAARVVGNPSLYRKMEATSQCIKRDIVFAASLYVS 269
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Match: A0A1E7FB68_9STRA (Antiviral helicase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB68_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.320e-40 Identity = 79/119 (66.39%), Postives = 94/119 (78.99%), Query Frame = 1
Query: 7 DRLQTAVAQVVTIARSLGRLQRDCGLPVDPEENIKLNLNFGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYVA 363
+ L ++ TIA +LG+LQ+D GL VDP + + ++ FGLV VVYEWA GVPFCEI Q+T QEGS+VR ITRLDELCREVRN ARV+G+PTLYRKMEA S IKRDIVFAASLYV+
Sbjct: 838 ESLLNCCKRMKTIAINLGQLQKDHGLDVDPLDYAESSMKFGLVHVVYEWAIGVPFCEICQLTDAQEGSIVRCITRLDELCREVRNCARVVGNPTLYRKMEAASTAIKRDIVFAASLYVS 956
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Match: B7FTF8_PHATC (Predicted protein n=5 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTF8_PHATC) HSP 1 Score: 155 bits (391), Expect = 1.670e-40 Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 1
Query: 31 QVVTIARSLGRLQRDCGLPVDPEENIKLNLNFGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYVA 363
+++TIA +LGR+Q+D GL +DP E + +LNFGLV VVYEWA GVPF I +T VQEGS+VR+ITRLDELCREVRN ARV+G+PTLYRK+EA S IKRDIVFA+SLYV+
Sbjct: 762 RLITIALNLGRIQKDVGLDIDPAEYSESSLNFGLVHVVYEWALGVPFKSICDLTDVQEGSIVRSITRLDELCREVRNCARVVGNPTLYRKLEAASMTIKRDIVFASSLYVS 872
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Match: A0A7S4JTK5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JTK5_9STRA) HSP 1 Score: 154 bits (390), Expect = 2.520e-40 Identity = 79/116 (68.10%), Postives = 89/116 (76.72%), Query Frame = 1
Query: 13 LQTAVAQVVTIARSLGRLQRDCGLPVDPEENIKLNLNFGLVDVVYEWARGVPFCEITQITLVQEGSVVRAITRLDELCREVRNAARVIGDPTLYRKMEATSQLIKRDIVFAASLYV 360
L Q+ IA LG +QRD GL +DPEE +L FGLV VVYEWA GVPF I ++TLVQEGS+VR ITRLDELCREVRN ARV+G+PTLYRKMEA S IKRDIVFA+SLYV
Sbjct: 940 LAECCGQLKAIATKLGAMQRDHGLSIDPEEYCDGSLKFGLVHVVYEWALGVPFSNICELTLVQEGSIVRCITRLDELCREVRNCARVVGNPTLYRKMEAASTAIKRDIVFASSLYV 1055 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1131.2728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1131.2728.1 >prot_M-pyrifera_M_contig1131.2728.1 ID=prot_M-pyrifera_M_contig1131.2728.1|Name=mRNA_M-pyrifera_M_contig1131.2728.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp LTDRLQTAVAQVVTIARSLGRLQRDCGLPVDPEENIKLNLNFGLVDVVYEback to top mRNA from alignment at M-pyrifera_M_contig1131:7686..10129+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1131.2728.1 ID=mRNA_M-pyrifera_M_contig1131.2728.1|Name=mRNA_M-pyrifera_M_contig1131.2728.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2444bp|location=Sequence derived from alignment at M-pyrifera_M_contig1131:7686..10129+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1131:7686..10129+ >mRNA_M-pyrifera_M_contig1131.2728.1 ID=mRNA_M-pyrifera_M_contig1131.2728.1|Name=mRNA_M-pyrifera_M_contig1131.2728.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig1131:7686..10129+ (Macrocystis pyrifera P11B4 male)back to top |