mRNA_M-pyrifera_M_contig113095.2725.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113095.2725.1
Unique NamemRNA_M-pyrifera_M_contig113095.2725.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Match: A0A0D6EL63_SPOSA (Dihydrolipoyllysine-residue succinyltransferase (Fragment) n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6EL63_SPOSA)

HSP 1 Score: 67.4 bits (163), Expect = 6.450e-11
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:  160 ASLPSSAPAPAPVGGERTETRVKMSRMRARIAERLKDAQNTAAMLTTFQE 309
            A   + A AP P  G RTETRVKMSRMRARIAERLK+AQNTAA LTTF E
Sbjct:  224 AKKEAGASAPKPQAGARTETRVKMSRMRARIAERLKEAQNTAASLTTFNE 273
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BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Match: A0A814DGT2_9BILA (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814DGT2_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 1.200e-10
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  157 AASLPSSAPAPAPVGGERTETRVKMSRMRARIAERLKDAQNTAAMLTTFQE 309
            A SLPS    P  + G RTETRVKMSRMR +IAERLK+AQNT AMLTTF E
Sbjct:  260 APSLPSGGADPNKITGTRTETRVKMSRMRLKIAERLKEAQNTCAMLTTFNE 310
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BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Match: A0A7V2T847_9PROT (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7V2T847_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 1.550e-10
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:  169 PSSAPAPAPVGGERTETRVKMSRMRARIAERLKDAQNTAAMLTTFQE 309
            P++ P+PAPV G R E RV+M+R+R RIAERLK+AQNTAAMLTTF E
Sbjct:  157 PAATPSPAPVAGGRREERVRMTRLRKRIAERLKEAQNTAAMLTTFNE 203
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BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Match: UPI0018873713 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like n=2 Tax=Rhipicephalus TaxID=34630 RepID=UPI0018873713)

HSP 1 Score: 65.9 bits (159), Expect = 2.280e-10
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  172 SSAPAPAPVGGERTETRVKMSRMRARIAERLKDAQNTAAMLTTFQE 309
            ++A A APVGG RTE RVKM+RMR RIA+RLKDAQNT AMLTTF E
Sbjct:  340 TAAAAAAPVGGARTEQRVKMNRMRQRIAQRLKDAQNTYAMLTTFNE 385
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BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Match: A0A7S1GP02_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GP02_CYCTE)

HSP 1 Score: 64.3 bits (155), Expect = 3.160e-10
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:  169 PSSAPAPAPVG-GERTETRVKMSRMRARIAERLKDAQNTAAMLTTFQE 309
            P +APA AP   G+RTE R KMSRMR R+A RLKDAQNTAAMLTTFQE
Sbjct:   65 PPAAPADAPAFLGQRTERRTKMSRMRQRVAARLKDAQNTAAMLTTFQE 112
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BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Match: UPI001458B39D (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458B39D)

HSP 1 Score: 64.7 bits (156), Expect = 5.650e-10
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  190 APVGGERTETRVKMSRMRARIAERLKDAQNTAAMLTTFQE 309
            AP GG RTETRVKM+RMR RIAERLKDAQNT AMLTTF E
Sbjct:  233 APRGGGRTETRVKMNRMRLRIAERLKDAQNTCAMLTTFNE 272
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BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Match: A0A4Y7SAU4_9AGAR (Dihydrolipoyllysine-residue succinyltransferase n=2 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7SAU4_9AGAR)

HSP 1 Score: 63.9 bits (154), Expect = 1.050e-9
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  160 ASLPSSAPA-PAPVGGERTETRVKMSRMRARIAERLKDAQNTAAMLTTFQE 309
            AS  S APA P P  G RTETR+KMSRMR RIAERLK++QN AA LTTF E
Sbjct:  211 ASKESKAPAAPRPAAGARTETRIKMSRMRLRIAERLKESQNAAASLTTFNE 261
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BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Match: A0A0C3CSB1_HEBCY (Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C3CSB1_HEBCY)

HSP 1 Score: 63.5 bits (153), Expect = 1.420e-9
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  172 SSAPAPAPVGGERTETRVKMSRMRARIAERLKDAQNTAAMLTTFQE 309
            S+ PAP PV G R ETRVKM+RMR RIAERLK +QN AA LTTF E
Sbjct:  186 SAPPAPKPVAGSRNETRVKMNRMRLRIAERLKQSQNAAASLTTFNE 231
[Close]
BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Match: A0A6I8PR46_ORNAN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial n=3 Tax=Monotremata TaxID=9255 RepID=A0A6I8PR46_ORNAN)

HSP 1 Score: 63.5 bits (153), Expect = 1.430e-9
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:  157 AASLPSSAPAPAP--VGGERTETRVKMSRMRARIAERLKDAQNTAAMLTTFQE 309
            +A  PS+APAP P  V G R+E RVKM+RMR RIA+RLK+AQNT AMLTTF E
Sbjct:  208 SAVKPSAAPAPEPGAVKGARSEHRVKMNRMRQRIAQRLKEAQNTCAMLTTFNE 260
[Close]
BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Match: A0A5C5G3B7_9BASI (Dihydrolipoyllysine-residue succinyltransferase n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G3B7_9BASI)

HSP 1 Score: 63.5 bits (153), Expect = 1.430e-9
Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  172 SSAPAPAPVGGERTETRVKMSRMRARIAERLKDAQNTAAMLTTFQE 309
            S A A  P  G R ETRVKMSRMRARIAERLK+AQNTAA LTTF E
Sbjct:  214 SPASAAGPAKGSRNETRVKMSRMRARIAERLKEAQNTAASLTTFNE 259
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113095.2725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D6EL63_SPOSA6.450e-1174.00Dihydrolipoyllysine-residue succinyltransferase (F... [more]
A0A814DGT2_9BILA1.200e-1070.59Dihydrolipoyllysine-residue succinyltransferase co... [more]
A0A7V2T847_9PROT1.550e-1070.21Dihydrolipoyllysine-residue succinyltransferase co... [more]
UPI00188737132.280e-1076.09dihydrolipoyllysine-residue succinyltransferase co... [more]
A0A7S1GP02_CYCTE3.160e-1075.00Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
UPI001458B39D5.650e-1085.00dihydrolipoyllysine-residue succinyltransferase co... [more]
A0A4Y7SAU4_9AGAR1.050e-970.59Dihydrolipoyllysine-residue succinyltransferase n=... [more]
A0A0C3CSB1_HEBCY1.420e-971.74Dihydrolipoyllysine-residue succinyltransferase n=... [more]
A0A6I8PR46_ORNAN1.430e-967.92Dihydrolipoyllysine-residue succinyltransferase co... [more]
A0A5C5G3B7_9BASI1.430e-976.09Dihydrolipoyllysine-residue succinyltransferase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113095contigM-pyrifera_M_contig113095:233..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue8.4e-08
Seed eggNOG ortholog2880.D7G687
KEGG rclassRC00004,RC02727,RC02833
KEGG koko:K00658
KEGG ReactionR02570,R02571,R08549
KEGG Pathwayko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dihydrolipoyllysine-residue succinyltransferase activity
EggNOG OGsCOG0508@1,KOG0559@2759
Ec32 ortholog description2-oxoglutarate dehydrogenase, E2 component
Ec32 orthologEc-10_000960.1
EC2.3.1.61
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.2064118-CDS-M-pyrifera_M_contig113095:232..5411622815645.2064118-CDS-M-pyrifera_M_contig113095:232..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113095 233..541 -
1692277502.7283497-CDS-M-pyrifera_M_contig113095:232..5411692277502.7283497-CDS-M-pyrifera_M_contig113095:232..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113095 233..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113095.2725.1prot_M-pyrifera_M_contig113095.2725.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113095 233..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113095.2725.1

>prot_M-pyrifera_M_contig113095.2725.1 ID=prot_M-pyrifera_M_contig113095.2725.1|Name=mRNA_M-pyrifera_M_contig113095.2725.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
GAAAGGSAQKPSDAGAEESSPPPPPPSSSSPPSSSPPPAPASSSPPSSSS
PPAASLPSSAPAPAPVGGERTETRVKMSRMRARIAERLKDAQNTAAMLTT
FQE
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mRNA from alignment at M-pyrifera_M_contig113095:233..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113095.2725.1 ID=mRNA_M-pyrifera_M_contig113095.2725.1|Name=mRNA_M-pyrifera_M_contig113095.2725.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig113095:233..541- (Macrocystis pyrifera P11B4 male)
GGCGCAGCAGCTGGTGGGAGTGCGCAGAAGCCAAGCGATGCTGGCGCAGA
AGAATCTTCTCCACCACCACCACCACCATCCTCCTCCTCACCCCCATCCT
CCTCCCCGCCTCCTGCACCGGCTTCCTCCTCCCCTCCTTCCTCCTCCTCG
CCTCCCGCCGCATCACTGCCTTCTTCTGCCCCCGCTCCTGCTCCTGTTGG
GGGAGAGCGCACTGAGACTCGGGTGAAGATGAGTCGGATGCGTGCGCGCA
TTGCGGAGAGGCTCAAGGACGCGCAGAACACAGCAGCGATGCTTACGACG
TTCCAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113095:233..541-

>mRNA_M-pyrifera_M_contig113095.2725.1 ID=mRNA_M-pyrifera_M_contig113095.2725.1|Name=mRNA_M-pyrifera_M_contig113095.2725.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig113095:233..541- (Macrocystis pyrifera P11B4 male)
GGCGCAGCAGCTGGTGGGAGTGCGCAGAAGCCAAGCGATGCTGGCGCAGA
AGAATCTTCTCCACCACCACCACCACCATCCTCCTCCTCACCCCCATCCT
CCTCCCCGCCTCCTGCACCGGCTTCCTCCTCCCCTCCTTCCTCCTCCTCG
CCTCCCGCCGCATCACTGCCTTCTTCTGCCCCCGCTCCTGCTCCTGTTGG
GGGAGAGCGCACTGAGACTCGGGTGAAGATGAGTCGGATGCGTGCGCGCA
TTGCGGAGAGGCTCAAGGACGCGCAGAACACAGCAGCGATGCTTACGACG
TTCCAGGAGGGCGCAGCAGCTGGTGGGAGTGCGCAGAAGCCAAGCGATGC
TGGCGCAGAAGAATCTTCTCCACCACCACCACCACCATCCTCCTCCTCAC
CCCCATCCTCCTCCCCGCCTCCTGCACCGGCTTCCTCCTCCCCTCCTTCC
TCCTCCTCGCCTCCCGCCGCATCACTGCCTTCTTCTGCCCCCGCTCCTGC
TCCTGTTGGGGGAGAGCGCACTGAGACTCGGGTGAAGATGAGTCGGATGC
GTGCGCGCATTGCGGAGAGGCTCAAGGACGCGCAGAACACAGCAGCGATG
CTTACGACGTTCCAGGAG
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