mRNA_M-pyrifera_M_contig113083.2722.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113083.2722.1
Unique NamemRNA_M-pyrifera_M_contig113083.2722.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Match: A0A2E7KKJ5_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKJ5_9PLAN)

HSP 1 Score: 206 bits (524), Expect = 3.300e-62
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1
Query:    1 KVSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATLQTIEKQISEL 579
            KVSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATLQTIEKQISEL
Sbjct:   59 KVSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATLQTIEKQISEL 251          
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Match: A0A518AE60_9PLAN (Putative efflux pump membrane fusion protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AE60_9PLAN)

HSP 1 Score: 178 bits (451), Expect = 2.780e-51
Identity = 172/193 (89.12%), Postives = 180/193 (93.26%), Query Frame = 1
Query:    1 KVSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATLQTIEKQISEL 579
            +V RGELLIELEPYDLLER+AEAEAALAEA+AYHSKLVAGFRPEEI XXXXXXXXXXXXXXXXXXXXXXXXXX  VAELRLADAQ+RLA++QQ+RIETLFAEKTASQDELDTANTE QVAAARK+VKEQALELLKEGTRKE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    A LQTIEKQISEL
Sbjct:   59 QVIRGELLIELEPYDLLERRAEAEAALAEAEAYHSKLVAGFRPEEIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAELRLADAQYRLAKSQQSRIETLFAEKTASQDELDTANTELQVAAARKAVKEQALELLKEGTRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKTEANLQTIEKQISEL 251          
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Match: A0A518IJR5_9PLAN (Putative efflux pump membrane fusion protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IJR5_9PLAN)

HSP 1 Score: 143 bits (360), Expect = 8.690e-38
Identity = 107/143 (74.83%), Postives = 123/143 (86.01%), Query Frame = 1
Query:    4 VSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEID 432
            VS+GELL ELEPYDLLER+AEA A LAEAKA + KLVAGFR EEI      XXXXXXXXXXXXXXXXXXXXX  VAEL+LADA++RLA+A+Q RIETLFA+K+AS+DELDTANTE Q  AARK V+++AL+LLKEGTR EEI+
Sbjct:   60 VSKGELLFELEPYDLLERRAEAVAGLAEAKANYEKLVAGFRTEEIAKAQAQXXXXXXXXXXXXXXXXXXXXXXXVAELQLADAEYRLAKAKQTRIETLFAKKSASKDELDTANTELQATAARKEVRQKALDLLKEGTRIEEIE 202          
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Match: UPI00119E890B (HlyD family efflux transporter periplasmic adaptor subunit n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=UPI00119E890B)

HSP 1 Score: 140 bits (354), Expect = 1.290e-37
Identity = 105/143 (73.43%), Postives = 129/143 (90.21%), Query Frame = 1
Query:    4 VSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEID 432
            V++G+LLIELEPYDLLER+AEA A+L+EAKA + KLVAGFR EE+  XXXXXXXXXXXXXXXXXXXXXXXX +A+AEL LADA++RLA+A+  RIE+LFA+K+AS DE+DTANTE QVAA++K VK++ ++LLKEGTRKEEID
Sbjct:   60 VAQGDLLIELEPYDLLERRAEAVASLSEAKANYQKLVAGFRVEEVAQXXXXXXXXXXXXXXXXXXXXXXXXESAIAELHLADAEYRLAKAKHLRIESLFAKKSASTDEMDTANTELQVAASKKEVKQKTVDLLKEGTRKEEID 202          
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Match: A0A517VQQ8_9PLAN (Putative efflux pump membrane fusion protein n=3 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VQQ8_9PLAN)

HSP 1 Score: 142 bits (359), Expect = 1.570e-37
Identity = 104/143 (72.73%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    4 VSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEID 432
            VS G+LLIELEPYDLLER+AEA A+LAEAKA + KLVAGFR EE+    XXXXXXXXXXXXXXXXXXXXX  +A+AEL LADA++RLA+A+  RIE+LFA+K+AS DE+DTANTE QVAA++K VK++ ++LLKEGTRKEEID
Sbjct:   73 VSEGDLLIELEPYDLLERRAEAVASLAEAKANYQKLVAGFRVEEVAQAQXXXXXXXXXXXXXXXXXXXXXIESAIAELHLADAEYRLAKAKHLRIESLFAKKSASTDEMDTANTELQVAASKKEVKQKTVDLLKEGTRKEEID 215          
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Match: A0A2E2C2K3_9PLAN (Biotin_lipoyl_2 domain-containing protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C2K3_9PLAN)

HSP 1 Score: 139 bits (351), Expect = 2.170e-36
Identity = 103/138 (74.64%), Postives = 122/138 (88.41%), Query Frame = 1
Query:    4 VSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTR 417
            VSRG+LLIELEPYDLLE++AEA A LAEAKA H +LVAGFRPEEI    XXXXXXXXXXXXXXXXXXXXXXX  V+EL LADA++RLA+A+Q R+ETLF +K+AS DE+DTANTE QVAA++K VK+++L+LLKEGTR
Sbjct:   69 VSRGDLLIELEPYDLLEKRAEAIAGLAEAKAQHEELVAGFRPEEIDEAAXXXXXXXXXXXXXXXXXXXXXXXXGVSELHLADAEYRLAKAKQMRVETLFGQKSASTDEMDTANTELQVAASKKEVKQKSLDLLKEGTR 206          
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Match: A0A517VL41_9PLAN (Multidrug export protein EmrA n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VL41_9PLAN)

HSP 1 Score: 137 bits (346), Expect = 9.380e-36
Identity = 100/143 (69.93%), Postives = 120/143 (83.92%), Query Frame = 1
Query:    4 VSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEID 432
            VS+G+LLIELEPYDLLER+AEA A LAE KA H +LVAGFR EEI       XXXXXXXXXXXXXXXXXXXX  +AEL LAD+++RLA+++Q R+ETLF +K+AS DELDTANTE QV+A++K VK++ L+LL EGTRKEEID
Sbjct:   60 VSQGDLLIELEPYDLLERRAEAIAGLAEVKAQHEELVAGFRSEEIDEAEAKVXXXXXXXXXXXXXXXXXXXXXXIAELHLADSEYRLAKSKQMRVETLFGQKSASADELDTANTEMQVSASKKEVKQKNLDLLNEGTRKEEID 202          
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Match: A0A2E0SKZ9_9PLAN (Uncharacterized protein n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E0SKZ9_9PLAN)

HSP 1 Score: 89.0 bits (219), Expect = 1.740e-17
Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    1 KVSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEI 429
            +V +G+LL+ELEP+DLLER+AEAEA+LA  +A  + + AGFR EE+                            A A + LA+A+ +LA+ +  R+ TL+  +  S +E+D ++T  Q+A A  +V+ + L LLKEGTR EEI
Sbjct:   60 EVQKGDLLVELEPFDLLERRAEAEASLARQQATLALIRAGFREEEVIQADAHREQLAAKLLELKNGPRQQDIKAADARVTLANAELQLARQKHERMRTLYNREAISSEEIDESDTALQIAMANLAVRNEELALLKEGTRAEEI 202          
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Match: A0A257WQC6_9BACT (HlyD_D23 domain-containing protein n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257WQC6_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 8.550e-13
Identity = 75/142 (52.82%), Postives = 97/142 (68.31%), Query Frame = 1
Query:    4 VSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEI 429
            V R + L++L+P+DLL+R+AEA A   + +  H+KL +GFR EEI    XXXXXXXXXXXXXXXXXXXXXXX     L LA A+   AQ Q  R+E+LF +  A+QD+ D A  + +V  A+ SV E  L LLKEG+R E+I
Sbjct:   62 VQRDQPLVKLDPFDLLQRRAEAAAVAQQRQEVHAKLKSGFRQEEIAAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXRLALAKAELERAQLQFQRVESLFGKGVATQDQFDEAEKQAKVTRAQVSVAEDELALLKEGSRVEDI 203          
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Match: M5TN36_9BACT (HlyD family secretion protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5TN36_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-12
Identity = 60/142 (42.25%), Postives = 84/142 (59.15%), Query Frame = 1
Query:    4 VSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVAELRLADAQFRLAQAQQARIETLFAEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEI 429
            V  G +L+ELEPYDL+ER++E E  LA  +A + +++AG+RPEEI     XXXXXXXXXX             A A L LA A+  LA+    R+  L      S+ ELD A   ++ + A  +V++Q L LL+ GTR+EE+
Sbjct:   61 VEAGMVLVELEPYDLIERESELELTLAAHEADYRRVIAGYRPEEIGQAQAXXXXXXXXXXLLRAGPRQQEIEAARARLSLAKAEQTLAEETTQRLSRLAQSNATSEQELDAARERYEASLANVAVRQQELALLEAGTREEEL 202          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113083.2722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KKJ5_9PLAN3.300e-62100.00Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A518AE60_9PLAN2.780e-5189.12Putative efflux pump membrane fusion protein n=3 T... [more]
A0A518IJR5_9PLAN8.690e-3874.83Putative efflux pump membrane fusion protein n=2 T... [more]
UPI00119E890B1.290e-3773.43HlyD family efflux transporter periplasmic adaptor... [more]
A0A517VQQ8_9PLAN1.570e-3772.73Putative efflux pump membrane fusion protein n=3 T... [more]
A0A2E2C2K3_9PLAN2.170e-3674.64Biotin_lipoyl_2 domain-containing protein n=7 Tax=... [more]
A0A517VL41_9PLAN9.380e-3669.93Multidrug export protein EmrA n=1 Tax=Gimesia alga... [more]
A0A2E0SKZ9_9PLAN1.740e-1739.16Uncharacterized protein n=1 Tax=Planctomyces sp. T... [more]
A0A257WQC6_9BACT8.550e-1352.82HlyD_D23 domain-containing protein n=1 Tax=Plancto... [more]
M5TN36_9BACT1.170e-1242.25HlyD family secretion protein n=2 Tax=Rhodopirellu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113083contigM-pyrifera_M_contig113083:2..580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score142.1
Seed ortholog evalue2.7e-31
Seed eggNOG ortholog344747.PM8797T_13685
Preferred nameybhG
KEGG koko:K01993
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0016020,GO:0042221,GO:0044464,GO:0046677,GO:0050896,GO:0071944
EggNOG free text desc.Biotin-lipoyl like
EggNOG OGs2IYMS@203682,COG0845@1,COG0845@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.0971959-CDS-M-pyrifera_M_contig113083:1..5801622815645.0971959-CDS-M-pyrifera_M_contig113083:1..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113083 2..580 -
1692277502.676633-CDS-M-pyrifera_M_contig113083:1..5801692277502.676633-CDS-M-pyrifera_M_contig113083:1..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113083 2..580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113083.2722.1prot_M-pyrifera_M_contig113083.2722.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113083 2..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113083.2722.1

>prot_M-pyrifera_M_contig113083.2722.1 ID=prot_M-pyrifera_M_contig113083.2722.1|Name=mRNA_M-pyrifera_M_contig113083.2722.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
KVSRGELLIELEPYDLLERKAEAEAALAEAKAYHSKLVAGFRPEEIAEAA
AKVDQLKAHLTQLVNGPRPQEIETAVAELRLADAQFRLAQAQQARIETLF
AEKTASQDELDTANTEFQVAAARKSVKEQALELLKEGTRKEEIDAARAEL
KQAEDAWQLMKNGSRREDIEQAAAAVKKTEATLQTIEKQISEL
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mRNA from alignment at M-pyrifera_M_contig113083:2..580-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113083.2722.1 ID=mRNA_M-pyrifera_M_contig113083.2722.1|Name=mRNA_M-pyrifera_M_contig113083.2722.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig113083:2..580- (Macrocystis pyrifera P11B4 male)
AAGGTCAGCAGGGGAGAACTGCTGATTGAACTGGAGCCTTACGATCTGCT GGAACGAAAGGCCGAGGCCGAAGCGGCACTGGCGGAAGCGAAAGCATATC ACAGTAAACTCGTAGCCGGCTTTCGCCCGGAAGAAATCGCTGAAGCGGCA GCAAAGGTCGATCAGCTCAAAGCGCATCTCACACAGTTGGTGAATGGACC ACGTCCCCAGGAAATTGAAACGGCCGTTGCTGAACTCAGACTCGCTGATG CCCAGTTCCGACTGGCACAGGCGCAACAGGCCCGCATCGAAACTCTGTTT GCTGAAAAAACTGCTTCCCAGGACGAGCTGGATACCGCCAACACGGAATT CCAGGTGGCAGCCGCCAGAAAATCGGTCAAGGAGCAGGCACTGGAACTGC TCAAAGAGGGCACCCGCAAAGAGGAGATCGATGCAGCACGGGCAGAACTG AAGCAGGCAGAGGATGCCTGGCAGTTGATGAAAAACGGAAGTCGCCGGGA AGATATCGAACAGGCGGCAGCGGCAGTGAAAAAAACAGAAGCAACCCTGC AGACAATTGAAAAGCAGATTAGCGAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113083:2..580-

>mRNA_M-pyrifera_M_contig113083.2722.1 ID=mRNA_M-pyrifera_M_contig113083.2722.1|Name=mRNA_M-pyrifera_M_contig113083.2722.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig113083:2..580- (Macrocystis pyrifera P11B4 male)
AAGGTCAGCAGGGGAGAACTGCTGATTGAACTGGAGCCTTACGATCTGCT
GGAACGAAAGGCCGAGGCCGAAGCGGCACTGGCGGAAGCGAAAGCATATC
ACAGTAAACTCGTAGCCGGCTTTCGCCCGGAAGAAATCGCTGAAGCGGCA
GCAAAGGTCGATCAGCTCAAAGCGCATCTCACACAGTTGGTGAATGGACC
ACGTCCCCAGGAAATTGAAACGGCCGTTGCTGAACTCAGACTCGCTGATG
CCCAGTTCCGACTGGCACAGGCGCAACAGGCCCGCATCGAAACTCTGTTT
GCTGAAAAAACTGCTTCCCAGGACGAGCTGGATACCGCCAACACGGAATT
CCAGGTGGCAGCCGCCAGAAAATCGGTCAAGGAGCAGGCACTGGAACTGC
TCAAAGAGGGCACCCGCAAAGAGGAGATCGATGCAGCACGGGCAGAACTG
AAGCAGGCAGAGGATGCCTGGCAGTTGATGAAAAACGGAAGTCGCCGGGA
AGATATCGAACAGGCGGCAGCGGCAGTGAAAAAAACAGAAGCAACCCTGC
AGACAATTGAAAAGCAGATTAGCGAGCTGAAGGTCAGCAGGGGAGAACTG
CTGATTGAACTGGAGCCTTACGATCTGCTGGAACGAAAGGCCGAGGCCGA
AGCGGCACTGGCGGAAGCGAAAGCATATCACAGTAAACTCGTAGCCGGCT
TTCGCCCGGAAGAAATCGCTGAAGCGGCAGCAAAGGTCGATCAGCTCAAA
GCGCATCTCACACAGTTGGTGAATGGACCACGTCCCCAGGAAATTGAAAC
GGCCGTTGCTGAACTCAGACTCGCTGATGCCCAGTTCCGACTGGCACAGG
CGCAACAGGCCCGCATCGAAACTCTGTTTGCTGAAAAAACTGCTTCCCAG
GACGAGCTGGATACCGCCAACACGGAATTCCAGGTGGCAGCCGCCAGAAA
ATCGGTCAAGGAGCAGGCACTGGAACTGCTCAAAGAGGGCACCCGCAAAG
AGGAGATCGATGCAGCACGGGCAGAACTGAAGCAGGCAGAGGATGCCTGG
CAGTTGATGAAAAACGGAAGTCGCCGGGAAGATATCGAACAGGCGGCAGC
GGCAGTGAAAAAAACAGAAGCAACCCTGCAGACAATTGAAAAGCAGATTA
GCGAGCTG
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