mRNA_M-pyrifera_M_contig113081.2721.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113081.2721.1
Unique NamemRNA_M-pyrifera_M_contig113081.2721.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: M2Y4U9_GALSU (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4U9_GALSU)

HSP 1 Score: 70.5 bits (171), Expect = 1.540e-14
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 QAFDEHMNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 171
            QAFD+HMNL+LSD  ET    E D +TGEEL +A  RK+PM++VRGD VIL+ PP R
Sbjct:   32 QAFDQHMNLVLSDVEETALKVEVDDETGEELIKAVKRKMPMLFVRGDGVILVAPPLR 88
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BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: A9UTK3_MONBE (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UTK3_MONBE)

HSP 1 Score: 65.5 bits (158), Expect = 1.570e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    4 AFDEHMNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPRA 174
            A+D+HMN++LS+ VET    + D +TGEEL +   R LPM+YVRGD VIL+ PP RA
Sbjct:   37 AYDQHMNMVLSNVVETLATVDVDDETGEELVKTAKRVLPMLYVRGDGVILVAPPHRA 93
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BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: A0A7E4V274_PANRE (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4V274_PANRE)

HSP 1 Score: 64.7 bits (156), Expect = 4.040e-12
Identity = 27/56 (48.21%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    4 AFDEHMNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 171
            AFD+H+N++LSD VET  + E DP++ EE+ ++ TR++P++++RGD+VIL+  P R
Sbjct:   45 AFDQHLNMVLSDVVETINIVETDPESSEEIHKSTTREIPLLFIRGDSVILVSTPNR 100
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BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: F2TZT7_SALR5 (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TZT7_SALR5)

HSP 1 Score: 62.8 bits (151), Expect = 1.730e-11
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    4 AFDEHMNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 171
            A+D+H+N++LSD VET    E D ++ EE+ +   RK+PM+YVRGD VIL+ PP R
Sbjct:   36 AYDQHLNMVLSDVVETITTSEIDEESYEEIIKTTERKMPMLYVRGDGVILVAPPMR 91
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BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: A0A0P1A5Z2_PLAHL (U6 snRNA-associated Sm-like protein LSm3 n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1A5Z2_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 2.650e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 QAFDEHMNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 171
            QA+D+H+N++LSD  ET  ++E DP+T EEL +   R + M++VRGD VIL+ PP R
Sbjct:   22 QAYDQHLNMVLSDVEETITVQELDPETYEELIKQSKRTIEMLFVRGDVVILVAPPLR 78
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BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: G4Z9B8_PHYSP (U6 snRNA-associated Sm-like protein LSm3 n=8 Tax=Phytophthora TaxID=4783 RepID=G4Z9B8_PHYSP)

HSP 1 Score: 62.0 bits (149), Expect = 3.560e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 QAFDEHMNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 171
            QA+D+H+N++LSD  ET  ++E DP+T EEL +   R + M++VRGD VIL+ PP R
Sbjct:   34 QAYDQHLNMVLSDVEETITVQELDPETYEELIKQSKRTIEMLFVRGDVVILVAPPLR 90
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BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: M4B7B7_HYAAE (U6 snRNA-associated Sm-like protein LSm3 n=15 Tax=Oomycota TaxID=4762 RepID=M4B7B7_HYAAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.560e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 QAFDEHMNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 171
            QA+D+H+N++LSD  ET  ++E DP+T EEL +   R + M++VRGD VIL+ PP R
Sbjct:   34 QAYDQHLNMVLSDVEETITVQELDPETYEELIKQSKRTIEMLFVRGDVVILVAPPLR 90
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BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: UPI0018CF4440 (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Acalyptratae TaxID=43741 RepID=UPI0018CF4440)

HSP 1 Score: 60.8 bits (146), Expect = 5.120e-11
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 QAFDEHMNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 171
            QAFD+H+N++L DA ET    E D +T EE+ +   R +PM++VRGD VIL+ PP R
Sbjct:    6 QAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTKRNIPMLFVRGDGVILVSPPMR 62
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BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: A0A3F2RVP5_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVP5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.760e-11
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 QAFDEHMNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 171
            QA+D+H+N++LSD  ET  ++E DP+T EEL +   R + M++VRGD VIL+ PP R
Sbjct:   34 QAYDQHLNMVLSDVEETITVQELDPETYEELIKQSKRNIEMLFVRGDVVILVAPPLR 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: B8CE48_THAPS (U6 snRNA-associated Sm-like protein LSm3 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CE48_THAPS)

HSP 1 Score: 61.2 bits (147), Expect = 6.830e-11
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 AFDEHMNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 171
            AFD+H+N++LSD  ET    E D +TGEE+   +TR + M++VRGD V+L+ PP R
Sbjct:   33 AFDQHLNMVLSDVEETITSTEEDDETGEEIVNKRTRSVGMLFVRGDIVVLVSPPLR 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M2Y4U9_GALSU1.540e-1461.40U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=G... [more]
A9UTK3_MONBE1.570e-1256.14U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=M... [more]
A0A7E4V274_PANRE4.040e-1248.21U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=P... [more]
F2TZT7_SALR51.730e-1151.79U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]
A0A0P1A5Z2_PLAHL2.650e-1150.88U6 snRNA-associated Sm-like protein LSm3 n=3 Tax=P... [more]
G4Z9B8_PHYSP3.560e-1150.88U6 snRNA-associated Sm-like protein LSm3 n=8 Tax=P... [more]
M4B7B7_HYAAE3.560e-1150.88U6 snRNA-associated Sm-like protein LSm3 n=15 Tax=... [more]
UPI0018CF44405.120e-1150.88U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=A... [more]
A0A3F2RVP5_9STRA6.760e-1150.88U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=P... [more]
B8CE48_THAPS6.830e-1150.00U6 snRNA-associated Sm-like protein LSm3 (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113081contigM-pyrifera_M_contig113081:91..267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog130081.XP_005707394.1
Preferred nameLSM3
KEGG koko:K12622
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000781,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005694,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030629,GO:0031974,GO:0031981,GO:0032991,GO:0033962,GO:0034470,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070034,GO:0070925,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0098687,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
EggNOG free text desc.cytoplasmic mRNA processing body assembly
EggNOG OGsKOG3460@1,KOG3460@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons1
Model size177
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.0481637-CDS-M-pyrifera_M_contig113081:90..2491622815645.0481637-CDS-M-pyrifera_M_contig113081:90..249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113081 91..249 -
1692277502.6543458-CDS-M-pyrifera_M_contig113081:90..2491692277502.6543458-CDS-M-pyrifera_M_contig113081:90..249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113081 91..249 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.0630207-UTR-M-pyrifera_M_contig113081:249..2671622815645.0630207-UTR-M-pyrifera_M_contig113081:249..267Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113081 250..267 -
1692277502.6667175-UTR-M-pyrifera_M_contig113081:249..2671692277502.6667175-UTR-M-pyrifera_M_contig113081:249..267Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113081 250..267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113081.2721.1prot_M-pyrifera_M_contig113081.2721.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113081 91..249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113081.2721.1

>prot_M-pyrifera_M_contig113081.2721.1 ID=prot_M-pyrifera_M_contig113081.2721.1|Name=mRNA_M-pyrifera_M_contig113081.2721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPP
RA*
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mRNA from alignment at M-pyrifera_M_contig113081:91..267-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113081.2721.1 ID=mRNA_M-pyrifera_M_contig113081.2721.1|Name=mRNA_M-pyrifera_M_contig113081.2721.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig113081:91..267- (Macrocystis pyrifera P11B4 male)
CAGGCGTTTGACGAGCACATGAACCTGATGCTGTCTGACGCTGTGGAGAC
GACGTTTCTGAAGGAGCGGGACCCCGACACGGGGGAGGAGCTGTCCGAGG
CGAAGACGAGGAAGCTGCCGATGGTGTACGTGCGCGGAGACGCCGTCATC
CTCCTCCGACCCCCGCCCAGGGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113081:91..267-

>mRNA_M-pyrifera_M_contig113081.2721.1 ID=mRNA_M-pyrifera_M_contig113081.2721.1|Name=mRNA_M-pyrifera_M_contig113081.2721.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig113081:91..267- (Macrocystis pyrifera P11B4 male)
ATGAACCTGATGCTGTCTGACGCTGTGGAGACGACGTTTCTGAAGGAGCG
GGACCCCGACACGGGGGAGGAGCTGTCCGAGGCGAAGACGAGGAAGCTGC
CGATGGTGTACGTGCGCGGAGACGCCGTCATCCTCCTCCGACCCCCGCCC
AGGGCGTGAATGAACCTGATGCTGTCTGACGCTGTGGAGACGACGTTTCT
GAAGGAGCGGGACCCCGACACGGGGGAGGAGCTGTCCGAGGCGAAGACGA
GGAAGCTGCCGATGGTGTACGTGCGCGGAGACGCCGTCATCCTCCTCCGA
CCCCCGCCCAGGGCGTGA
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