mRNA_M-pyrifera_M_contig113060.2716.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113060.2716.1
Unique NamemRNA_M-pyrifera_M_contig113060.2716.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Match: A0A0D3C9V1_BRAOL (Hydrolase_4 domain-containing protein n=7 Tax=Brassiceae TaxID=981071 RepID=A0A0D3C9V1_BRAOL)

HSP 1 Score: 79.7 bits (195), Expect = 3.490e-15
Identity = 44/113 (38.94%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   16 GCSPSSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKSTYDYRHVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLYAEMSARLDASVVALDYSG 354
            G + S++A++LAF PP+PP Y++V   +    R    S EM +   D   ++VV++ TRRG      + K P+A++T+L+ HGNATD G M  +Y E+S  L+ +++  DYSG
Sbjct:    2 GTATSTMAAKLAFFPPNPPSYTVVTDESTGKMR---ISAEMMRHRRD-EEIEVVKIMTRRGNEIVGMYIKHPTAKLTVLYSHGNATDIGQMFIIYNELSHHLNVNLMGYDYSG 110          
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Match: A0A218XY60_PUNGR (alpha/beta hydrolase domain-containing protein 17B-like n=2 Tax=Punica granatum TaxID=22663 RepID=A0A218XY60_PUNGR)

HSP 1 Score: 79.7 bits (195), Expect = 4.470e-15
Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   16 GCSPSSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKSTYDYRHVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLYAEMSARLDASVVALDYSG 354
            G + SS+A++ AF PP+PP YS++K+   S+GR   ++ + +        VDV+ L T+RG      H K PSA +T+L+ HGNATD G M  ++ E+S  L  +++  DYSG
Sbjct:    2 GLATSSMAAKFAFFPPTPPSYSIMKEE--STGRMRLTNVQPKDD------VDVLILPTKRGNEIVAVHVKHPSASLTLLYSHGNATDIGQMYRIFTELSLHLGVNLMGYDYSG 106          
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Match: M4FI00_BRARP (Uncharacterized protein n=1 Tax=Brassica rapa subsp. pekinensis TaxID=51351 RepID=M4FI00_BRARP)

HSP 1 Score: 74.7 bits (182), Expect = 5.440e-15
Identity = 42/112 (37.50%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   16 GCSPSSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKSTYDYRHVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLYAEMSARLDASVVALDYS 351
            G + S++A++LAF PP+PP Y++V   +    R    S EM +   D   ++VV++ TRRG      + K P+A++T+L+ HGNATD G M  +Y E+S  L+ +++ L Y+
Sbjct:    2 GTATSTMAAKLAFFPPNPPSYTVVTDESTGKMR---ISAEMMRHRRD-EEIEVVKIMTRRGNEIVGMYIKHPTAKLTVLYSHGNATDIGQMFIIYNELSHHLNVNLMGLVYT 109          
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Match: A0A8B8JI45_ABRPR (alpha/beta hydrolase domain-containing protein 17C-like isoform X2 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JI45_ABRPR)

HSP 1 Score: 75.9 bits (185), Expect = 2.640e-14
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   28 SSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKSTYDYRHVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLYAEMSARLDASVVALDYSG 354
            SS+A++LAF PP+PP Y +VK+        GG+   M  +     +V VV+  TRRG      + + P A+ TIL+ HGNA D G M  L+ E+S  L  +++  DYSG
Sbjct:    6 SSMAAKLAFFPPNPPSYKVVKE--------GGTGMLMLAAFRQRENVQVVKFRTRRGTEVVGVYVEHPMAKSTILYSHGNAADIGQMYELFVELSEHLCVNLLGYDYSG 106          
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Match: UPI0009E5E626 (protein ABHD17B-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E5E626)

HSP 1 Score: 77.0 bits (188), Expect = 3.060e-14
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   28 SSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKSTYDYR-HVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLYAEMSARLDASVVALDYSG 354
            SS+A++LAF PP+PP Y LV++ A         + +M  S + +R +V+V++L TRRG      + + P A  T+L+ HGNA D G M  L+ E+S  L  +++  DYSG
Sbjct:    6 SSMAAKLAFFPPNPPSYELVREAA---------TGQMMMSRFPHRENVEVMKLPTRRGTEIVAVYIRNPMATSTLLYSHGNAADLGQMYELFVELSIHLRVNLMGYDYSG 106          
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Match: Q8VYE6_ARATH (Uncharacterized protein At4g24760 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q8VYE6_ARATH)

HSP 1 Score: 75.5 bits (184), Expect = 3.230e-14
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   28 SSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKSTYDYR-HVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLYAEMSARLDASVVALDYSG 354
            SS+A++LAF PP+PP Y LV+           ++E    S + +R +VD++RL TRRG      + + P A  T+L+ HGNA D G M  L+ E+S  L  +++  DYSG
Sbjct:    6 SSMAAKLAFFPPNPPSYKLVRDE---------TTELFLMSPFPHRENVDILRLPTRRGTEIVAMYIRYPMAVTTLLYSHGNAADIGQMYELFIELSIHLRVNLMGYDYSG 106          
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Match: I3SKM3_LOTJA (Hydrolase_4 domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SKM3_LOTJA)

HSP 1 Score: 74.7 bits (182), Expect = 6.320e-14
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   28 SSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKSTYDYR-HVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLYAEMSARLDASVVALDYSG 354
            SS+A++LAF PP+PP Y LVK+ A         +E +    + +R +V+V++   RRG      + + P A+ TIL+ HGNA D G M  L+ E+S  L  +++  DYSG
Sbjct:    6 SSMAAKLAFFPPNPPSYKLVKEEA---------TELLLMDAFPHRENVEVLKFPNRRGTEIVAVYVRHPMAKSTILYSHGNAADIGQMYELFVELSIHLRVNLMGYDYSG 106          
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Match: A0A8B8JIQ7_ABRPR (alpha/beta hydrolase domain-containing protein 17B-like isoform X1 n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JIQ7_ABRPR)

HSP 1 Score: 75.9 bits (185), Expect = 8.940e-14
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   28 SSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKSTYDYRHVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLYAEMSARLDASVVALDYSG 354
            SS+A++LAF PP+PP Y +VK+        GG+   M  +     +V VV+  TRRG      + + P A+ TIL+ HGNA D G M  L+ E+S  L  +++  DYSG
Sbjct:    6 SSMAAKLAFFPPNPPSYKVVKE--------GGTGMLMLAAFRQRENVQVVKFRTRRGTEVVGVYVEHPMAKSTILYSHGNAADIGQMYELFVELSEHLCVNLLGYDYSG 106          
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Match: A0A371HMN6_MUCPR (Protein ABHD17C (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HMN6_MUCPR)

HSP 1 Score: 75.1 bits (183), Expect = 1.530e-13
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   28 SSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKSTYDYR-HVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLYAEMSARLDASVVALDYSG 354
            SS+A++LAF PP PP Y LVK            +  +  S + +R +V++++L TRRG H    + + P A  T+L+ HGNATD G M  L+ ++S  L  +++  DYSG
Sbjct:    6 SSMAAKLAFFPPHPPSYKLVKDDV---------TGLLLLSPFPHRENVEILKLPTRRGAHILAMYVRHPMATSTLLYSHGNATDLGQMYDLFIQLSIHLRLNLIGYDYSG 106          
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Match: A0A0D3A620_BRAOL (Hydrolase_4 domain-containing protein n=26 Tax=Brassicaceae TaxID=3700 RepID=A0A0D3A620_BRAOL)

HSP 1 Score: 75.1 bits (183), Expect = 1.650e-13
Identity = 42/110 (38.18%), Postives = 64/110 (58.18%), Query Frame = 1
Query:   28 SSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKSTYDYR-HVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLYAEMSARLDASVVALDYSG 354
            SS+A++LAF PP+PP Y +++  A         +E +    + +R +VDV+RL TRRG      + + P A  T+L+ HGNA D G M  L+ E+S  L  +++  DYSG
Sbjct:    6 SSMAAKLAFFPPNPPSYKIIRDEA---------TELLLMDPFPHRENVDVLRLPTRRGTEIVAMYIRYPMAVTTLLYSHGNAADIGQMYELFIELSIHLRVNLMGYDYSG 106          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113060.2716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D3C9V1_BRAOL3.490e-1538.94Hydrolase_4 domain-containing protein n=7 Tax=Bras... [more]
A0A218XY60_PUNGR4.470e-1539.82alpha/beta hydrolase domain-containing protein 17B... [more]
M4FI00_BRARP5.440e-1537.50Uncharacterized protein n=1 Tax=Brassica rapa subs... [more]
A0A8B8JI45_ABRPR2.640e-1439.45alpha/beta hydrolase domain-containing protein 17C... [more]
UPI0009E5E6263.060e-1439.09protein ABHD17B-like n=1 Tax=Phalaenopsis equestri... [more]
Q8VYE6_ARATH3.230e-1439.09Uncharacterized protein At4g24760 n=1 Tax=Arabidop... [more]
I3SKM3_LOTJA6.320e-1438.18Hydrolase_4 domain-containing protein n=1 Tax=Lotu... [more]
A0A8B8JIQ7_ABRPR8.940e-1439.45alpha/beta hydrolase domain-containing protein 17B... [more]
A0A371HMN6_MUCPR1.530e-1338.18Protein ABHD17C (Fragment) n=1 Tax=Mucuna pruriens... [more]
A0A0D3A620_BRAOL1.650e-1338.18Hydrolase_4 domain-containing protein n=26 Tax=Bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113060contigM-pyrifera_M_contig113060:1..423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.5
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog4006.Lus10033575
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alpha beta hydrolase domain-containing protein
EggNOG OGs37HYX@33090,3GB6C@35493,4JN60@91835,COG1073@1,KOG1552@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons2
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.6028328-CDS-M-pyrifera_M_contig113060:0..2031622815644.6028328-CDS-M-pyrifera_M_contig113060:0..203Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113060 1..203 -
1692277502.5566986-CDS-M-pyrifera_M_contig113060:0..2031692277502.5566986-CDS-M-pyrifera_M_contig113060:0..203Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113060 1..203 -
1622815644.6158466-CDS-M-pyrifera_M_contig113060:272..4231622815644.6158466-CDS-M-pyrifera_M_contig113060:272..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113060 273..423 -
1692277502.5681005-CDS-M-pyrifera_M_contig113060:272..4231692277502.5681005-CDS-M-pyrifera_M_contig113060:272..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113060 273..423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113060.2716.1prot_M-pyrifera_M_contig113060.2716.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113060 1..423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113060.2716.1

>prot_M-pyrifera_M_contig113060.2716.1 ID=prot_M-pyrifera_M_contig113060.2716.1|Name=mRNA_M-pyrifera_M_contig113060.2716.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MLCRSGCSPSSVASQLAFHPPSPPQYSLVKKRAGSSGRGGGSSEEMEKST
YDYRHVDVVRLHTRRGRHPFLFHWKRPSAEITILFCHGNATDCGGMAPLY
AEMSARLDASVVALDYSG
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mRNA from alignment at M-pyrifera_M_contig113060:1..423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113060.2716.1 ID=mRNA_M-pyrifera_M_contig113060.2716.1|Name=mRNA_M-pyrifera_M_contig113060.2716.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig113060:1..423- (Macrocystis pyrifera P11B4 male)
ATGTTGTGCCGTTCTGGTTGCAGTCCGTCGTCGGTGGCGTCGCAGCTCGC GTTTCACCCTCCGAGCCCGCCACAGTACAGTCTGGTGAAGAAGCGGGCGG GGAGTAGTGGCCGCGGCGGCGGCTCTAGTGAAGAAATGGAGAAATCCACG TGTTGTGGGCGTGGCACCAGCTTCGAGGTGCTGTCTGACATGAAGATGGC GGCTGAAGGCATGCACGAAGACGACTACCGGCATGTAGACGTGGTGCGAC TGCACACCAGGCGAGGCCGGCACCCGTTCTTGTTCCACTGGAAGCGACCC TCCGCAGAAATCACTATTCTTTTCTGCCACGGTAATGCAACAGACTGCGG CGGCATGGCGCCACTGTATGCAGAGATGTCTGCTCGGCTGGACGCCTCTG TCGTCGCCTTGGACTACAGCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113060:1..423-

>mRNA_M-pyrifera_M_contig113060.2716.1 ID=mRNA_M-pyrifera_M_contig113060.2716.1|Name=mRNA_M-pyrifera_M_contig113060.2716.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig113060:1..423- (Macrocystis pyrifera P11B4 male)
ATGTTGTGCCGTTCTGGTTGCAGTCCGTCGTCGGTGGCGTCGCAGCTCGC
GTTTCACCCTCCGAGCCCGCCACAGTACAGTCTGGTGAAGAAGCGGGCGG
GGAGTAGTGGCCGCGGCGGCGGCTCTAGTGAAGAAATGGAGAAATCCACG
TATGTTGTGCCGTTCTGGTTGCAGTCCGTCGTCGGTGGCGTCGCAGCTCG
CGTTTCACCCTCCGAGCCCGCCACAGTACAGTCTGGTGAAGAAGCGGGCG
GGGAGTAGTGGCCGCGGCGGCGGCTCTAGTGAAGAAATGGAGAAATCCAC
GTACGACTACCGGCATGTAGACGTGGTGCGACTGCACACCAGGCGAGGCC
GGCACCCGTTCTTGTTCCACTGGAAGCGACCCTCCGCAGAAATCACTATT
CTTTTCTGCCACGGTAATGCAACAGACTGCGGCGGCATGGCGCCACTGTA
TGCAGAGATGTCTGCTCGGCTGGACGCCTCTGTCGTCGCCTTGGACTACA
GCGGCACGACTACCGGCATGTAGACGTGGTGCGACTGCACACCAGGCGAG
GCCGGCACCCGTTCTTGTTCCACTGGAAGCGACCCTCCGCAGAAATCACT
ATTCTTTTCTGCCACGGTAATGCAACAGACTGCGGCGGCATGGCGCCACT
GTATGCAGAGATGTCTGCTCGGCTGGACGCCTCTGTCGTCGCCTTGGACT
ACAGCGGC
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