mRNA_M-pyrifera_M_contig113058.2714.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113058.2714.1
Unique NamemRNA_M-pyrifera_M_contig113058.2714.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113058.2714.1 vs. uniprot
Match: A0A0D2X2Y2_CAPO3 (Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X2Y2_CAPO3)

HSP 1 Score: 71.2 bits (173), Expect = 1.240e-11
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:    1 VKKLVSPPIIALLASCCISLKPFLRPLLFPPINPDEDSSTPPLSFLLEAIMILANCTVGCTTIVLGANLSKGPM------SSALSARDIVAVGFTKLMFSPFCGLIITEIARNLGIITD-PVMHMVLLIETATSPAMSLVILAGI 414
            ++K ++PPI A + S  I +   +R L FP +     SS+ PL+F+ +A+  ++N  V  TT++LGA LS GPM      S+ L+    VA+   KL   P  G +IT  A    II D P    V+++E+    A++L+++  +
Sbjct:  317 IRKSLNPPIYAAIVSVIIGMISPIRELFFPALG---SSSSAPLNFITDAVHTISNAVVPLTTMMLGAELSSGPMPLSSLRSTTLTYSSAVALVVAKLFIMPVLGTLITLGAHAASIIPDDPAFRFVMMLESCAPSAINLIVMCSL 458
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BLAST of mRNA_M-pyrifera_M_contig113058.2714.1 vs. uniprot
Match: A0A6J1DYW7_MOMCH (protein PIN-LIKES 7-like isoform X2 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1DYW7_MOMCH)

HSP 1 Score: 63.5 bits (153), Expect = 5.640e-9
Identity = 43/148 (29.05%), Postives = 77/148 (52.03%), Query Frame = 1 
Query:    1 VKKLVSPPIIALLASCCISLKPFLRPLLFPPINPDEDSSTPPLSFLLEAIMILANCTVGCTTIVLGANLSKGPMSSALSARDIVAVGFTKLMFSPFCGLIITEIARNLGIIT-DPVMHMVLLIETATSPAMSLVILAGIIGSGEAETS 441
            +++L++PP +  +         +LR L+          S  P   + +AI +L + T+ CTT++LG NL++G  SS + A  IV V   +    P  G+ + + A  LG ++ DP+   +L+I+  T PAM++  +  + G G+ E S
Sbjct:  239 IEELMAPPSLGAIVGFIFGSVTWLRHLIV--------GSQAPFRVIQDAIQLLGDGTIPCTTLILGGNLTQGLRSSKVKASTIVGVIAVRYFALPGIGVFVVKGANALGFLSPDPLYQFLLMIQYTTPPAMAISTMTQLFGVGQEECS 378
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BLAST of mRNA_M-pyrifera_M_contig113058.2714.1 vs. uniprot
Match: A0A7I8LFE0_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LFE0_SPIIN)

HSP 1 Score: 56.6 bits (135), Expect = 1.480e-6
Identity = 41/145 (28.28%), Postives = 77/145 (53.10%), Query Frame = 1 
Query:    4 KKLVSPPIIALLASCCISLKPFLRPLLFPPINPDEDSSTPPLSFLLEAIMILANCTVGCTTIVLGANLSKGPMSSALSARDIVAVGFTKLMFSPFCGLIITEIARNLGII-TDPVMHMVLLIETATSPAMSLVILAGIIGSGEAE 435
            KK+ +P  I ++    I + P +R LL       ED+   PL  +  +  IL   ++   T+++G NL KG   S + +  I+ V   + +  P  G+ I + A +LG++ +DP+   +L ++ A  PAM++V +  + G+G++E
Sbjct:  254 KKIFAPSTIGVIIGFTIGVIPPIRRLLI-----GEDA---PLRMIEGSASILGEGSIPSITLIMGGNLIKGLYGSDIRSSLIIGVVVVRFIILPIIGVGIVKWAIHLGLVHSDPLYQFILFLQYAVPPAMNIVTITQLFGTGKSE 390
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BLAST of mRNA_M-pyrifera_M_contig113058.2714.1 vs. uniprot
Match: A0A6J1I5J2_CUCMA (protein PIN-LIKES 7-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1I5J2_CUCMA)

HSP 1 Score: 55.1 bits (131), Expect = 5.070e-6
Identity = 38/147 (25.85%), Postives = 74/147 (50.34%), Query Frame = 1 
Query:    4 KKLVSPPIIALLASCCISLKPFLRPLLFPPINPDEDSSTPPLSFLLEAIMILANCTVGCTTIVLGANLSKGPMSSALSARDIVAVGFTKLMFSPFCGLIITEIARNLGIIT-DPVMHMVLLIETATSPAMSLVILAGIIGSGEAETS 441
            K+L+ PP +  +         +LR L+           + P   + +++ +L + T+  TT++LGANL++G  +  +   +IVA+   + +  P  G+ + + A  LG +  DP+   VL+++    PAMS+ I+  +   G+ E S
Sbjct:  251 KELMEPPTLGAIIGFIFGAVTWLRHLVV--------GESAPFRVVQDSVKLLGDGTIPSTTLILGANLTRGLRTYRVKPMEIVALIVVRYIALPAIGIAVVKAANALGFLPPDPMYQFVLMVQYTLPPAMSIGIMTQLFDVGQEECS 389
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113058.2714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0D2X2Y2_CAPO31.240e-1133.10Uncharacterized protein n=2 Tax=Capsaspora owczarz... [more]
A0A6J1DYW7_MOMCH5.640e-929.05protein PIN-LIKES 7-like isoform X2 n=1 Tax=Momord... [more]
A0A7I8LFE0_SPIIN1.480e-628.28Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A6J1I5J2_CUCMA5.070e-625.85protein PIN-LIKES 7-like n=3 Tax=Cucurbita TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113058contigM-pyrifera_M_contig113058:3..571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score70.9
Seed ortholog evalue5.8e-10
Seed eggNOG ortholog192875.XP_004347980.1
KEGG koko:K07088
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.transmembrane transport
EggNOG OGs38EXJ@33154,COG0679@1,KOG2722@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons3
Model size441
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113058.2714.1prot_M-pyrifera_M_contig113058.2714.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113058 3..571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.4659884-CDS-M-pyrifera_M_contig113058:2..1741622815644.4659884-CDS-M-pyrifera_M_contig113058:2..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113058 3..174 -
1692277502.5190372-CDS-M-pyrifera_M_contig113058:2..1741692277502.5190372-CDS-M-pyrifera_M_contig113058:2..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113058 3..174 -
1622815644.4778543-CDS-M-pyrifera_M_contig113058:224..3241622815644.4778543-CDS-M-pyrifera_M_contig113058:224..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113058 225..324 -
1692277502.529606-CDS-M-pyrifera_M_contig113058:224..3241692277502.529606-CDS-M-pyrifera_M_contig113058:224..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113058 225..324 -
1622815644.4902627-CDS-M-pyrifera_M_contig113058:402..5711622815644.4902627-CDS-M-pyrifera_M_contig113058:402..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113058 403..571 -
1692277502.5373008-CDS-M-pyrifera_M_contig113058:402..5711692277502.5373008-CDS-M-pyrifera_M_contig113058:402..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113058 403..571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113058.2714.1

>prot_M-pyrifera_M_contig113058.2714.1 ID=prot_M-pyrifera_M_contig113058.2714.1|Name=mRNA_M-pyrifera_M_contig113058.2714.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
VKKLVSPPIIALLASCCISLKPFLRPLLFPPINPDEDSSTPPLSFLLEAI
MILANCTVGCTTIVLGANLSKGPMSSALSARDIVAVGFTKLMFSPFCGLI
ITEIARNLGIITDPVMHMVLLIETATSPAMSLVILAGIIGSGEAETS
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mRNA from alignment at M-pyrifera_M_contig113058:3..571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113058.2714.1 ID=mRNA_M-pyrifera_M_contig113058.2714.1|Name=mRNA_M-pyrifera_M_contig113058.2714.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=569bp|location=Sequence derived from alignment at M-pyrifera_M_contig113058:3..571- (Macrocystis pyrifera P11B4 male)
GTGAAGAAGCTCGTGTCACCTCCCATCATCGCCTTGCTCGCCAGCTGCTG
CATCTCTCTCAAACCCTTCTTGAGACCCCTCTTGTTCCCCCCTATTAATC
CGGACGAGGACTCTTCGACTCCACCGCTGTCTTTCCTCCTGGAAGCAATC
ATGATCCTGGCCAACTGCAGTGCGTGACCCCTCCCTCTTTCCCTCGGCGT
GCGACGGACCAGGCAATGCTACAGTACATTTGCTGACTGTGTGGCAGCGG
TTGGATGTACCACGATCGTGCTCGGGGCCAACCTCTCGAAGGGACCCATG
TCCAGCGCGTTATCCGCGCGCGACATCGTGGCCGTTGGCTTTACGAAGTA
CGCCAGCACTCCTCTTGGGGCATAACGCAGAGCTGACACGTGTATAGGCT
CATGTTTTCGCCGTTCTGCGGCTTGATCATCACCGAGATTGCTAGGAACC
TCGGCATCATCACCGATCCAGTCATGCACATGGTGCTGCTGATTGAGACT
GCAACGTCGCCAGCGATGTCTCTTGTCATTCTTGCAGGAATAATTGGGTC
AGGGGAGGCCGAGACAAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113058:3..571-

>mRNA_M-pyrifera_M_contig113058.2714.1 ID=mRNA_M-pyrifera_M_contig113058.2714.1|Name=mRNA_M-pyrifera_M_contig113058.2714.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig113058:3..571- (Macrocystis pyrifera P11B4 male)
GTGAAGAAGCTCGTGTCACCTCCCATCATCGCCTTGCTCGCCAGCTGCTG
CATCTCTCTCAAACCCTTCTTGAGACCCCTCTTGTTCCCCCCTATTAATC
CGGACGAGGACTCTTCGACTCCACCGCTGTCTTTCCTCCTGGAAGCAATC
ATGATCCTGGCCAACTGCAGTGAAGAAGCTCGTGTCACCTCCCATCATCG
CCTTGCTCGCCAGCTGCTGCATCTCTCTCAAACCCTTCTTGAGACCCCTC
TTGTTCCCCCCTATTAATCCGGACGAGGACTCTTCGACTCCACCGCTGTC
TTTCCTCCTGGAAGCAATCATGATCCTGGCCAACTGCACGGTTGGATGTA
CCACGATCGTGCTCGGGGCCAACCTCTCGAAGGGACCCATGTCCAGCGCG
TTATCCGCGCGCGACATCGTGGCCGTTGGCTTTACGAACGGTTGGATGTA
CCACGATCGTGCTCGGGGCCAACCTCTCGAAGGGACCCATGTCCAGCGCG
TTATCCGCGCGCGACATCGTGGCCGTTGGCTTTACGAAGCTCATGTTTTC
GCCGTTCTGCGGCTTGATCATCACCGAGATTGCTAGGAACCTCGGCATCA
TCACCGATCCAGTCATGCACATGGTGCTGCTGATTGAGACTGCAACGTCG
CCAGCGATGTCTCTTGTCATTCTTGCAGGAATAATTGGGTCAGGGGAGGC
CGAGACAAGCGCTCATGTTTTCGCCGTTCTGCGGCTTGATCATCACCGAG
ATTGCTAGGAACCTCGGCATCATCACCGATCCAGTCATGCACATGGTGCT
GCTGATTGAGACTGCAACGTCGCCAGCGATGTCTCTTGTCATTCTTGCAG
GAATAATTGGGTCAGGGGAGGCCGAGACAAGC
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