mRNA_M-pyrifera_M_contig113049.2712.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113049.2712.1
Unique NamemRNA_M-pyrifera_M_contig113049.2712.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Match: A0A7S4IHI1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IHI1_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 1.700e-25
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 1
Query:  112 GCLDPEAHPDLHGHDTEFLVPAGWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPKEYSGNLAVFPRSHVSIQDYI 360
            G L+P  HP    +D  FLVP  WK+ WHIDG+ N   S + P+G +MQFT+LVGVLL+DLP E+SGNLAV+P SH++IQD++
Sbjct:   20 GHLEP--HPFTESND--FLVPRKWKEFWHIDGVSNSFTSGIIPQGHIMQFTLLVGVLLKDLPHEFSGNLAVYPGSHLAIQDFV 98          
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Match: L8H8I4_ACACA (Phytanoyl-CoA dioxygenase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8I4_ACACA)

HSP 1 Score: 103 bits (258), Expect = 1.080e-23
Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 ILDLLYKSPLLSYAELLIGRVKRCYHGQIALRFPGSTGCLDPEAHPDLHGHDTEFLVPAGWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPKEYSGNLAVFPRSHVSIQDY 357
            I DLLYK+  L  A+ LIG+    + GQIALRFPG + C+     P L G  T F+ P GW   WHIDG+ +  +    PRG V  FT+L+GVLL D+P+  SGNL VFP  H+++Q++
Sbjct:  252 ITDLLYKTAALPLAQSLIGKTHPGFGGQIALRFPGFS-CIPSGDVPWL-GSATSFVYPEGWHQGWHIDGLHSPFSGV--PRGQVHNFTILLGVLLGDVPEPMSGNLTVFPGGHLALQNH 366          
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Match: A0A831TR36_9BACL (Uncharacterized protein n=1 Tax=Paenibacillaceae bacterium TaxID=2003592 RepID=A0A831TR36_9BACL)

HSP 1 Score: 72.0 bits (175), Expect = 9.850e-13
Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    7 DLLYKSPLLSYAELLIGR--VKRCYHGQIALRFPGSTGCLDPEAHPDLHGHDTEFLVPAGWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPKEYSGNLAVFPRSHVSIQDY 357
            DL+ K+P L +AE +IG+  +K  + GQIALRFP     +  +A+                K  +H+DGI ++ N       T   FTML+G+++ DLP E SGNL V+P SH+  ++Y
Sbjct:   76 DLIIKTPTLDFAESIIGKDKIKPVHMGQIALRFPS----MQEKAN----------------KPGYHLDGIYSENNGV--KEKTYHNFTMLLGIMMSDLPHENSGNLTVWPGSHLLYEEY 172          
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Match: A0A1H1YR10_9ACTN (Phytanoyl-CoA dioxygenase (PhyH) n=3 Tax=Actinopolymorpha TaxID=117156 RepID=A0A1H1YR10_9ACTN)

HSP 1 Score: 70.9 bits (172), Expect = 2.910e-12
Identity = 47/121 (38.84%), Postives = 58/121 (47.93%), Query Frame = 1
Query:    1 ILDLLYKSPLLSYAELLIGR--VKRCYHGQIALRFPGSTGCLDPEAHPDLHGHDTEFLVPAGWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPKEYSGNLAVFPRSHVSIQDY 357
            I DLL++SPL   AE  IG   +     GQIALRFP      DP A                     HIDG+ +  N    P+GT+  FT LVGV L D+P  Y+GN  V+P SH   + Y
Sbjct:   67 ITDLLHRSPLWEVAESAIGEGAIAPVNAGQIALRFPTPGTPHDPHA---------------------HIDGMYSPHNGV--PKGTIANFTALVGVFLSDVPTSYAGNFTVWPGSHRQYEGY 164          
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Match: A0A830HKN3_9CHLO (CUE domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HKN3_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 3.380e-11
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 1
Query:   79 GQIALRFPGSTGCLDPEAHPDLHGHDTEFLVPA--GWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPKEYSGNLAVFPRSHVSIQDY 357
            GQIALRFPG   C +   + D    D         G + +WHIDGIP + N   +  G +  F  L GVLL D+ +  SG L V+P SHV + +Y
Sbjct:  283 GQIALRFPGDA-CPNATNYDDXXXXDVRISASHFDGVRRYWHIDGIPGESNGLSY--GKIHNFDCLCGVLLSDVQEPMSGELCVYPGSHVELAEY 374          
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Match: UPI00166934D1 (phytanoyl-CoA dioxygenase family protein n=1 Tax=Alicyclobacillus cellulosilyticus TaxID=1003997 RepID=UPI00166934D1)

HSP 1 Score: 66.2 bits (160), Expect = 1.370e-10
Identity = 46/121 (38.02%), Postives = 61/121 (50.41%), Query Frame = 1
Query:    1 ILDLLYKSPLLSYAELLIGR--VKRCYHGQIALRFPGSTGCLDPEAHPDLHGHDTEFLVPAGWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPKEYSGNLAVFPRSHVSIQDY 357
            I DLL K+P    AE ++G   ++     QIALRFP      DP   P          VP       H+DG+ +  N    P GT+  FTMLVGVLL D+ +EY+GN  V+P +H   + Y
Sbjct:   66 ITDLLNKTPAWELAESVLGEGNIRPVTSAQIALRFPV---LQDPPKPP----------VP-------HLDGMHSPHNGV--PAGTIQNFTMLVGVLLSDVTREYAGNFTVWPGTHRLYEQY 164          
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Match: A0A6I5VNT4_9ACTN (Uncharacterized protein n=2 Tax=Microlunatus sp. Gsoil 973 TaxID=2672569 RepID=A0A6I5VNT4_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 1.780e-9
Identity = 47/121 (38.84%), Postives = 57/121 (47.11%), Query Frame = 1
Query:    1 ILDLLYKSPLLSYAELLIGR--VKRCYHGQIALRFPGSTGCLDPEAHPDLHGHDTEFLVPAGWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPKEYSGNLAVFPRSHVSIQDY 357
            IL LL  +PL S AE +IG   +    HGQIALRFP  T     E HP                   HIDG+    N     +GT+  FT LVGV L D P   +GN  V+P +H +  DY
Sbjct:   65 ILSLLVDTPLWSMAESVIGEGTLLPVTHGQIALRFP--TNGPAAEIHP-------------------HIDGMYTPDNGV--KKGTIANFTALVGVYLSDTPTPDAGNFTVWPGTHRTYADY 162          
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Match: A0A2E4MU87_9BACT (Uncharacterized protein n=3 Tax=FCB group TaxID=1783270 RepID=A0A2E4MU87_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.820e-8
Identity = 44/118 (37.29%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   10 LLYKSPLLSYAELLIG--RVKRCYHGQIALRFPGSTGCLDPEAHPDLHGHDTEFLVPAGWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPKEYSGNLAVFPRSHVSIQDY 357
            LL  +P  S AE  IG  R++    GQIA+RFP +    DPE            L   G     H+DG  +  N    P+ T+  FTML+GV L ++  E+SGNLA++P +HV  + Y
Sbjct:   69 LLNDTPAWSLAESAIGKGRIQPVNRGQIAIRFPVAG---DPE------------LTLGG-----HLDGRHSPTNGV--PKDTIRNFTMLLGVSLSEVRTEWSGNLALWPGTHVLYEAY 164          
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Match: A0A3R7MRQ3_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MRQ3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.660e-7
Identity = 41/118 (34.75%), Postives = 56/118 (47.46%), Query Frame = 1
Query:    1 ILDLLYKSPLLSYAELLIG--RVKRCYHGQIALRFPGSTGCLDPEAHPDLHGHDTEFLVPAGWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPKEYSGNLAVFPRSHVSI 348
            +LDL Y S +  Y E L+G  +V      QIALRFP      +P+         TE          WH DG+          +G    FT+L G+ L ++P+  SGNL VFP SHV++
Sbjct:  246 VLDLYYLSDVCKYVEALVGADQVVPPQGAQIALRFPELGEPREPQG--------TE----------WHTDGMR---------QGRKHPFTLLAGIALSNVPEPLSGNLTVFPGSHVAL 336          
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Match: A0A6B0YBS0_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B0YBS0_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 1.730e-5
Identity = 36/110 (32.73%), Postives = 52/110 (47.27%), Query Frame = 1
Query:   34 SYAELLIG--RVKRCYHGQIALRFPGSTGCLDPEAHPDLHGHDTEFLVPAGWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPKEYSGNLAVFPRSHVSIQDY 357
            S+   L+G  RV R    QIALRFP   G L   A   + G+ T              +G+P+         G V  FTML+G++L D+P  +SGN   +P +H  ++ Y
Sbjct:   78 SHVRALLGDRRVVRPKGCQIALRFPLPEGTLRRVAGGHIDGYHTAR------------NGVPDD--------GIVRSFTMLLGIMLSDVPIPFSGNFTAWPGTHRDLERY 167          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113049.2712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7S4IHI1_9EUKA1.700e-2556.63Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
L8H8I4_ACACA1.080e-2347.06Phytanoyl-CoA dioxygenase n=1 Tax=Acanthamoeba cas... [more]
A0A831TR36_9BACL9.850e-1336.97Uncharacterized protein n=1 Tax=Paenibacillaceae b... [more]
A0A1H1YR10_9ACTN2.910e-1238.84Phytanoyl-CoA dioxygenase (PhyH) n=3 Tax=Actinopol... [more]
A0A830HKN3_9CHLO3.380e-1140.00CUE domain-containing protein n=1 Tax=Pycnococcus ... [more]
UPI00166934D11.370e-1038.02phytanoyl-CoA dioxygenase family protein n=1 Tax=A... [more]
A0A6I5VNT4_9ACTN1.780e-938.84Uncharacterized protein n=2 Tax=Microlunatus sp. G... [more]
A0A2E4MU87_9BACT2.820e-837.29Uncharacterized protein n=3 Tax=FCB group TaxID=17... [more]
A0A3R7MRQ3_9STRA3.660e-734.75Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A6B0YBS0_9GAMM1.730e-532.73Uncharacterized protein (Fragment) n=1 Tax=Gammapr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113049contigM-pyrifera_M_contig113049:24..461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.1
Seed ortholog evalue8e-10
Seed eggNOG ortholog1120950.KB892749_gene3374
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs2HZV9@201174,COG5285@1,COG5285@2
COG Functional cat.Q
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.359132-CDS-M-pyrifera_M_contig113049:23..2391622815644.359132-CDS-M-pyrifera_M_contig113049:23..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113049 24..239 -
1692277502.46462-CDS-M-pyrifera_M_contig113049:23..2391692277502.46462-CDS-M-pyrifera_M_contig113049:23..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113049 24..239 -
1622815644.3760264-CDS-M-pyrifera_M_contig113049:317..4611622815644.3760264-CDS-M-pyrifera_M_contig113049:317..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113049 318..461 -
1692277502.4832869-CDS-M-pyrifera_M_contig113049:317..4611692277502.4832869-CDS-M-pyrifera_M_contig113049:317..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113049 318..461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113049.2712.1prot_M-pyrifera_M_contig113049.2712.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113049 24..461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113049.2712.1

>prot_M-pyrifera_M_contig113049.2712.1 ID=prot_M-pyrifera_M_contig113049.2712.1|Name=mRNA_M-pyrifera_M_contig113049.2712.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
ILDLLYKSPLLSYAELLIGRVKRCYHGQIALRFPGSTGCLDPEAHPDLHG
HDTEFLVPAGWKDHWHIDGIPNQLNSALFPRGTVMQFTMLVGVLLQDLPK
EYSGNLAVFPRSHVSIQDYI
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mRNA from alignment at M-pyrifera_M_contig113049:24..461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113049.2712.1 ID=mRNA_M-pyrifera_M_contig113049.2712.1|Name=mRNA_M-pyrifera_M_contig113049.2712.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig113049:24..461- (Macrocystis pyrifera P11B4 male)
ATTCTTGACCTGCTGTACAAGTCTCCTCTGCTGTCATATGCTGAGCTGCT CATTGGAAGGGTCAAGCGCTGTTACCACGGTCAGATTGCACTCCGTTTCC CTGGCTCCACTGGCTGCCTCGACCCTGAGGCCCACCCTGATCTGGTCCAG CTCATGAAGATGGGCCAGAGGGTGAAGCAATTCTTCGGCAAGAACGACCA GCAGCCACAAGACCTTGTCCAGCACGGGCATGACACAGAGTTCCTTGTTC CAGCAGGCTGGAAGGACCACTGGCACATCGACGGCATCCCCAACCAACTC AATTCTGCCCTCTTCCCCAGAGGTACAGTCATGCAGTTCACCATGCTCGT TGGTGTGCTTCTCCAAGATCTCCCCAAGGAGTACTCGGGCAACTTAGCAG TGTTTCCTCGCAGTCATGTATCGATTCAGGACTACATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113049:24..461-

>mRNA_M-pyrifera_M_contig113049.2712.1 ID=mRNA_M-pyrifera_M_contig113049.2712.1|Name=mRNA_M-pyrifera_M_contig113049.2712.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig113049:24..461- (Macrocystis pyrifera P11B4 male)
ATTCTTGACCTGCTGTACAAGTCTCCTCTGCTGTCATATGCTGAGCTGCT
CATTGGAAGGGTCAAGCGCTGTTACCACGGTCAGATTGCACTCCGTTTCC
CTGGCTCCACTGGCTGCCTCGACCCTGAGGCCCACCCTGATCTGATTCTT
GACCTGCTGTACAAGTCTCCTCTGCTGTCATATGCTGAGCTGCTCATTGG
AAGGGTCAAGCGCTGTTACCACGGTCAGATTGCACTCCGTTTCCCTGGCT
CCACTGGCTGCCTCGACCCTGAGGCCCACCCTGATCTGCACGGGCATGAC
ACAGAGTTCCTTGTTCCAGCAGGCTGGAAGGACCACTGGCACATCGACGG
CATCCCCAACCAACTCAATTCTGCCCTCTTCCCCAGAGGTACAGTCATGC
AGTTCACCATGCTCGTTGGTGTGCTTCTCCAAGATCTCCCCAAGGAGTAC
TCGGGCAACTTAGCAGTGTTTCCTCGCAGTCATGTATCGATTCAGGACTA
CATCCACGGGCATGACACAGAGTTCCTTGTTCCAGCAGGCTGGAAGGACC
ACTGGCACATCGACGGCATCCCCAACCAACTCAATTCTGCCCTCTTCCCC
AGAGGTACAGTCATGCAGTTCACCATGCTCGTTGGTGTGCTTCTCCAAGA
TCTCCCCAAGGAGTACTCGGGCAACTTAGCAGTGTTTCCTCGCAGTCATG
TATCGATTCAGGACTACATC
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