mRNA_M-pyrifera_M_contig113037.2706.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113037.2706.1
Unique NamemRNA_M-pyrifera_M_contig113037.2706.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Match: UPI00083C1609 (transmembrane protein 230 isoform X1 n=2 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C1609)

HSP 1 Score: 73.2 bits (178), Expect = 2.550e-14
Identity = 32/93 (34.41%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 DHRYAIAEEGDPWVARKKSMAAGVLLLLVGCVCLALGIAIVSGLMETAHSDRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELPVYE 279
            D ++ +  E  PW    K++A   +LL+ G V L LG  +VSG ++  +SDR WP++++G++ F+PG++   I+  AY +V GY  +++P ++
Sbjct:   67 DAQFVLPPEKIPW----KAVAYAAILLVTGMVLLVLGSLVVSGHIDVKYSDRMWPMIILGILMFIPGAYHIRIAYYAYKKVPGYSFDDIPEFD 155          
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Match: A0A8J2EBM5_COTCN (Transmembrane protein 230 n=2 Tax=Cotesia TaxID=32390 RepID=A0A8J2EBM5_COTCN)

HSP 1 Score: 70.5 bits (171), Expect = 2.090e-13
Identity = 31/93 (33.33%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 DHRYAIAEEGDPWVARKKSMAAGVLLLLVGCVCLALGIAIVSGLMETAHSDRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELPVYE 279
            D ++A      PW    K++    LL + G V L +G  IVSG ++T +SDR WP++++G++ F+PG++   +++MAY ++ GY  +++P ++
Sbjct:   53 DSQFARPPIKIPW----KAITLASLLFIGGTVMLIIGSLIVSGHIDTKYSDRMWPIIILGILMFIPGAYHVRVALMAYRKIPGYSFDDIPEFD 141          
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Match: UPI0005CF036C (transmembrane protein 230 isoform X1 n=3 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CF036C)

HSP 1 Score: 70.5 bits (171), Expect = 2.490e-13
Identity = 29/82 (35.37%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   34 PWVARKKSMAAGVLLLLVGCVCLALGIAIVSGLMETAHSDRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELPVYE 279
            PW    K+++   LL + G V L +G  IVSG ++T +SDR WP++++G++ F+PG++   ++V AY ++ GY  +++P ++
Sbjct:   72 PW----KAISLATLLFVGGTVMLVIGSLIVSGQIDTKYSDRMWPIIILGILMFIPGAYHVRVAVQAYRKIPGYSFDDIPEFD 149          
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Match: UPI0006D4DA59 (transmembrane protein 230 n=1 Tax=Microplitis demolitor TaxID=69319 RepID=UPI0006D4DA59)

HSP 1 Score: 70.1 bits (170), Expect = 3.010e-13
Identity = 30/93 (32.26%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 DHRYAIAEEGDPWVARKKSMAAGVLLLLVGCVCLALGIAIVSGLMETAHSDRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELPVYE 279
            D ++A      PW    K++    LL + G + L +G  IVSG ++T +SDR WP++++G++ F+PG++   +++MAY ++ GY  +++P ++
Sbjct:   54 DSQFARPPIKIPW----KAITLASLLFIGGSIMLIIGSLIVSGHIDTKYSDRMWPIIILGILMFIPGAYHVRVALMAYRKIPGYSFDDIPEFD 142          
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Match: A0A4C1TYQ7_EUMVA (Transmembrane protein 230 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TYQ7_EUMVA)

HSP 1 Score: 69.3 bits (168), Expect = 3.040e-13
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 DHRYAIAEEGDPWVARKKSMAAGVLLLLVGCVCLALGIAIVSGLMETAHSDRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELPVYE 279
            D ++ +     PW    K++A    L +VG V L +G  IVSG ++T +SDR WP++V+G++ FLPG++   I+  AY    GY   ++P +E
Sbjct:   25 DAQFELPPPKIPW----KAIALATFLFVVGSVLLIVGSLIVSGHIDTKYSDRLWPMIVLGIIMFLPGAYHVRIAYYAYKEYPGYSFSDIPEFE 113          
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Match: UPI001E278EF4 (transmembrane protein 230 isoform X1 n=2 Tax=Coccinellini TaxID=263631 RepID=UPI001E278EF4)

HSP 1 Score: 69.7 bits (169), Expect = 3.160e-13
Identity = 32/93 (34.41%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 DHRYAIAEEGDPWVARKKSMAAGVLLLLVGCVCLALGIAIVSGLMETAHSDRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELPVYE 279
            D ++    +  PW    K++    LLL+VG   L  GI +VSG +   +SDR WP++++GL+ F+PG++   I+  AY  V GY  +++P ++
Sbjct:   41 DAQFVAPAQKVPW----KAITLATLLLVVGSFLLIFGILVVSGHISLEYSDRMWPMIILGLLMFIPGAYHVRIAYYAYKEVPGYSFDDIPEFD 129          
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Match: A0A7M7GPC4_APIME (Transmembrane protein 230 n=21 Tax=Apoidea TaxID=34735 RepID=A0A7M7GPC4_APIME)

HSP 1 Score: 68.9 bits (167), Expect = 6.610e-13
Identity = 29/93 (31.18%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    1 DHRYAIAEEGDPWVARKKSMAAGVLLLLVGCVCLALGIAIVSGLMETAHSDRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELPVYE 279
            D ++       PW    K++    LL + G + L +G  IVSG +++ +SDR WPL+++G++ F+PG++   ++++AY +V GY  +++P ++
Sbjct:   43 DSQFVSPSVKIPW----KAITLAALLFVGGTIMLIMGSLIVSGHIDSKYSDRMWPLIILGILMFIPGAYHMRVAILAYQKVPGYSFDDIPEFD 131          
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Match: A0A0K8TNZ8_TABBR (Transmembrane protein 230 (Fragment) n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TNZ8_TABBR)

HSP 1 Score: 68.6 bits (166), Expect = 6.880e-13
Identity = 27/65 (41.54%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   76 LLLVGCVCLALGIAIVSGLMETAHSDRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELP 270
            L++ G VC+A+GI+IVSG++E  + DR WPL ++G +  +PG +   I +   F+V GY I+++P
Sbjct:   52 LMMAGMVCMAIGISIVSGMIEEKYQDRAWPLFILGTIMLIPGGYYGVIVLCVIFKVRGYEIDDIP 116          
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Match: A0A6A4V8G2_AMPAM (Transmembrane protein 230 n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4V8G2_AMPAM)

HSP 1 Score: 68.2 bits (165), Expect = 9.050e-13
Identity = 31/94 (32.98%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 DHRYAIAEEGDPWVARKKSMAAGVLLLLVGCVCLALGIAIVSG-LMETAHSDRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELPVYE 279
            D +Y +  +  PW    KS+     L  +G   L +G  +VSG L++  ++DR WPL+++GL+ F+PGS+   ++ MAYF   G+  +++P ++
Sbjct:   26 DQQYMVVRKPIPW----KSIFLASFLFAIGTTLLVMGSLLVSGFLIDERYADRTWPLILLGLIMFIPGSYHVRVAYMAYFGYDGFSFDDIPSFD 115          
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Match: A0A6J0BZ66_NEOLC (Transmembrane protein 230 n=9 Tax=Tenthredinoidea TaxID=85772 RepID=A0A6J0BZ66_NEOLC)

HSP 1 Score: 68.2 bits (165), Expect = 9.500e-13
Identity = 28/82 (34.15%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   34 PWVARKKSMAAGVLLLLVGCVCLALGIAIVSGLMETAHSDRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELPVYE 279
            PW    K++A   +L + G V L +G  IVSG +++ ++DR WP++++G++ F+PG++   ++++AY +V GY  +++P +E
Sbjct:   40 PW----KAIALAAVLFVGGTVMLIVGSLIVSGHIDSKYADRMWPVIILGILMFIPGAYHVRVAILAYRKVPGYSFDDIPEFE 117          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113037.2706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00083C16092.550e-1434.41transmembrane protein 230 isoform X1 n=2 Tax=Nicro... [more]
A0A8J2EBM5_COTCN2.090e-1333.33Transmembrane protein 230 n=2 Tax=Cotesia TaxID=32... [more]
UPI0005CF036C2.490e-1335.37transmembrane protein 230 isoform X1 n=3 Tax=Cerat... [more]
UPI0006D4DA593.010e-1332.26transmembrane protein 230 n=1 Tax=Microplitis demo... [more]
A0A4C1TYQ7_EUMVA3.040e-1336.56Transmembrane protein 230 n=1 Tax=Eumeta variegata... [more]
UPI001E278EF43.160e-1334.41transmembrane protein 230 isoform X1 n=2 Tax=Cocci... [more]
A0A7M7GPC4_APIME6.610e-1331.18Transmembrane protein 230 n=21 Tax=Apoidea TaxID=3... [more]
A0A0K8TNZ8_TABBR6.880e-1341.54Transmembrane protein 230 (Fragment) n=1 Tax=Taban... [more]
A0A6A4V8G2_AMPAM9.050e-1332.98Transmembrane protein 230 n=3 Tax=Amphibalanus amp... [more]
A0A6J0BZ66_NEOLC9.500e-1334.15Transmembrane protein 230 n=9 Tax=Tenthredinoidea ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113037contigM-pyrifera_M_contig113037:192..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score68.2
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog69319.XP_008553712.1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Eukaryotic protein of unknown function (DUF872)
EggNOG OGs3A72A@33154,3BT5G@33208,3D9H0@33213,3SNQ6@50557,420J9@6656,46M6Y@7399,KOG4753@1,KOG4753@2759
Ec32 ortholog descriptionProtein of unknown function DUF872, transmembrane
Ec32 orthologEc-00_006650.1
COG Functional cat.S
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
Exons1
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.107165-CDS-M-pyrifera_M_contig113037:191..4731622815644.107165-CDS-M-pyrifera_M_contig113037:191..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113037 192..473 +
1692277502.3498604-CDS-M-pyrifera_M_contig113037:191..4731692277502.3498604-CDS-M-pyrifera_M_contig113037:191..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113037 192..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113037.2706.1prot_M-pyrifera_M_contig113037.2706.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113037 192..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113037.2706.1

>prot_M-pyrifera_M_contig113037.2706.1 ID=prot_M-pyrifera_M_contig113037.2706.1|Name=mRNA_M-pyrifera_M_contig113037.2706.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
DHRYAIAEEGDPWVARKKSMAAGVLLLLVGCVCLALGIAIVSGLMETAHS
DRGWPLVVVGLMTFLPGSWATTISVMAYFRVSGYRIEELPVYE*
back to top

mRNA from alignment at M-pyrifera_M_contig113037:192..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113037.2706.1 ID=mRNA_M-pyrifera_M_contig113037.2706.1|Name=mRNA_M-pyrifera_M_contig113037.2706.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig113037:192..473+ (Macrocystis pyrifera P11B4 male)
GACCACAGATATGCCATCGCCGAGGAGGGAGACCCCTGGGTTGCGAGGAA GAAGAGCATGGCAGCAGGCGTCCTCCTCCTGCTCGTGGGATGCGTCTGCT TGGCCCTTGGCATTGCCATCGTCTCAGGCCTCATGGAGACGGCCCACTCT GACAGGGGATGGCCCCTGGTGGTGGTCGGCCTCATGACATTCCTCCCTGG CTCCTGGGCGACGACTATCAGCGTCATGGCCTACTTCAGGGTCTCTGGCT ACCGTATTGAAGAGCTCCCCGTCTACGAGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig113037:192..473+

>mRNA_M-pyrifera_M_contig113037.2706.1 ID=mRNA_M-pyrifera_M_contig113037.2706.1|Name=mRNA_M-pyrifera_M_contig113037.2706.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig113037:192..473+ (Macrocystis pyrifera P11B4 male)
GACCACAGATATGCCATCGCCGAGGAGGGAGACCCCTGGGTTGCGAGGAA
GAAGAGCATGGCAGCAGGCGTCCTCCTCCTGCTCGTGGGATGCGTCTGCT
TGGCCCTTGGCATTGCCATCGTCTCAGGCCTCATGGAGACGGCCCACTCT
GACAGGGGATGGCCCCTGGTGGTGGTCGGCCTCATGACATTCCTCCCTGG
CTCCTGGGCGACGACTATCAGCGTCATGGCCTACTTCAGGGTCTCTGGCT
ACCGTATTGAAGAGCTCCCCGTCTACGAGTGAGACCACAGATATGCCATC
GCCGAGGAGGGAGACCCCTGGGTTGCGAGGAAGAAGAGCATGGCAGCAGG
CGTCCTCCTCCTGCTCGTGGGATGCGTCTGCTTGGCCCTTGGCATTGCCA
TCGTCTCAGGCCTCATGGAGACGGCCCACTCTGACAGGGGATGGCCCCTG
GTGGTGGTCGGCCTCATGACATTCCTCCCTGGCTCCTGGGCGACGACTAT
CAGCGTCATGGCCTACTTCAGGGTCTCTGGCTACCGTATTGAAGAGCTCC
CCGTCTACGAGTGA
back to top