mRNA_M-pyrifera_M_contig112958.2696.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112958.2696.1
Unique NamemRNA_M-pyrifera_M_contig112958.2696.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A358A1H5_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A1H5_9ACTN)

HSP 1 Score: 181 bits (459), Expect = 1.390e-54
Identity = 90/139 (64.75%), Postives = 106/139 (76.26%), Query Frame = 1
Query:    1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEEP 417
            L+ IM + ANISWT +FL  +L+  M F LG+GFIV+V NARYRD QYLIG+L+ V FFLVPIVY P LLDRD VP++ R LV WNPPALFVEIARD  YFL+ P    LL +AAWA+ TF +GW YFR +SM ISEEP
Sbjct:  132 LLVIMALFANISWTAVFLVFSLLLTMAFALGIGFIVAVLNARYRDIQYLIGVLIGVGFFLVPIVYPPSLLDRDDVPEIGRQLVTWNPPALFVEIARDGVYFLQTPDPLKLLVAAAWAVGTFTVGWFYFRARSMEISEEP 270          
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A6B1AWC8_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AWC8_9ACTN)

HSP 1 Score: 173 bits (439), Expect = 1.980e-51
Identity = 84/139 (60.43%), Postives = 107/139 (76.98%), Query Frame = 1
Query:    1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEEP 417
            L+ IM  L+NISWT++FL VA+           FIVSV NARYRD +YL GILLNV+FF VPIVYTP+LL ++ +P++AR+ V+WNP ALF+EI+RDA YFL+VP WN  LA+  W++ TF IGWV+FR QSM+ISEEP
Sbjct:  143 LVVIMTALSNISWTLVFLPVAMXXXXXXXXXXXFIVSVLNARYRDVKYLSGILLNVAFFAVPIVYTPELLKKEQIPEIARLFVEWNPVALFIEISRDAAYFLQVPLWNRFLAAVVWSVTTFVIGWVFFRRQSMSISEEP 281          
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A2D6UAL4_9ACTN (Transport permease protein n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UAL4_9ACTN)

HSP 1 Score: 172 bits (435), Expect = 5.840e-51
Identity = 83/138 (60.14%), Postives = 105/138 (76.09%), Query Frame = 1
Query:    1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
            L+ IM +  NISWT +FL  AL+  MMF LG+GFIV+V N+RYRD QYL G+L+ V FFLVP+VY P LL+ + VP++AR LV WNPPA+FVEIARD  YFL+ P    +L + AWA+ TFA+GW+YFR +SM ISEE
Sbjct:  132 LLVIMALFTNISWTALFLVFALLLTMMFALGIGFIVAVLNSRYRDIQYLTGVLIGVGFFLVPVVYPPSLLEHNDVPEIARQLVTWNPPAIFVEIARDGVYFLQTPDPLXVLVATAWAVGTFAVGWLYFRSRSMEISEE 269          
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A2E0SYM4_9ACTN (ABC2_membrane domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0SYM4_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 1.590e-45
Identity = 81/138 (58.70%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
            L+ IM +  NISWT +F   AL+  MMF LG+GFIV+V N+RYRD QYL G+L+ V FFLVP+VY P LL+ + VP +AR LV WNPPA+FVE ARD  YFL+ P    +L + AWA+ TFA GW+YFR +SM ISEE
Sbjct:  465 LLVIMALFTNISWTALFXVFALLLTMMFALGIGFIVAVLNSRYRDIQYLTGVLIGVGFFLVPVVYPPSLLEXNDVPXIARQLVTWNPPAIFVEXARDGVYFLQTPDPLRVLVATAWAVGTFAXGWLYFRSRSMEISEE 602          
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A3M2GIJ2_ACTSX (Transport permease protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GIJ2_ACTSX)

HSP 1 Score: 142 bits (357), Expect = 3.480e-39
Identity = 78/141 (55.32%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRD--GVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEEP 417
            L+AIM+ L N+SWTV+FL +ALV V +F LG+GF+V++ NARYRD QYL GI LNV FF VPIV+TP ++     G+P + RI ++ NP   FV  ARDA YFLEVP    ++A  AW++ +F  GW YFR +SM ISEEP
Sbjct:  135 LVAIMVALLNVSWTVVFLPLALVSVAVFALGIGFVVAILNARYRDVQYLTGIALNVWFFSVPIVFTPAIVPERAYGLP-VGRI-IELNPLTQFVGFARDAVYFLEVPSLGRIVAVVAWSVASFVPGWWYFRRKSMEISEEP 273          
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A6B1EE92_9ACTN (Transport permease protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EE92_9ACTN)

HSP 1 Score: 138 bits (348), Expect = 1.070e-37
Identity = 81/141 (57.45%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLL-DRD-GVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEEP 417
            L+ IM VLAN+SWT++FL VA++   MF LG+GF  ++ NARYRD Q+L  I+L+V FF+VPIVYTPD++ DR  G+P +ARI V+ NP    + +ARDA YFLE P    L  +AAWAI TFAIG  +FR +SMAISEEP
Sbjct:  148 LVLIMTVLANVSWTLVFLPVAMLLAAMFALGLGFAAAIVNARYRDIQHLTTIVLSVGFFMVPIVYTPDIVPDRAYGLP-VARI-VELNPLNSVIAVARDAVYFLETPDLADLATAAAWAIGTFAIGLAFFRRRSMAISEEP 286          
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A800LQ96_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800LQ96_9ACTN)

HSP 1 Score: 115 bits (288), Expect = 8.890e-29
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 1
Query:   28 NISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
            N+ WT++ L V L+F  MFGLG+G ++SVFN RYRD + LI ILL+  FFLVPIVYT D++  +     A  L+  NP + FV  ARD  YFLE P    +   A +A  +  +GW +   +SMA+SEE
Sbjct:  155 NLGWTIVLLPVVLLFTAMFGLGIGMVMSVFNTRYRDVENLIVILLSTMFFLVPIVYTEDIIPEEAYGLPAAALIGANPISQFVGTARDVVYFLEWPSLARMSLLAVYAFGSLGVGWWFLNRRSMALSEE 283          
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A2E1WMJ6_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1WMJ6_9ACTN)

HSP 1 Score: 111 bits (277), Expect = 3.080e-27
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 1
Query:    1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRD--GVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
            L+ +M++L N+    + L + L    +FGLGVGF V V N  YRD QYL+GI++N  FFLVPIVY  D++ +   G+P   R +V+WNP   FV  ARD+ Y +E P  +  LA   ++  TFA+GW +F  +SM +SE+
Sbjct:  136 LLLVMVLLGNVGLPTLLLPIVLALAGLFGLGVGFFVCVLNTHYRDVQYLVGIVINAVFFLVPIVYPIDIIPQHHWGLP--IRKIVEWNPINQFVAAARDSAYLVEWPSASRWLALVIYSTATFALGWRFFARRSMRLSED 273          
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A1Z9JQP1_9ACTN (Transport permease protein n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A1Z9JQP1_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 1.390e-26
Identity = 59/140 (42.14%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRD--GVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
            LI +MI++AN+  T + L + LV   +FGLG+GF V V N  YRD QYL+GI+LN  FFLVPIVY   ++     G+P   R ++++NP   FV  AR++ Y LE   WN       +++ +F +GW +F  +SM +SE+
Sbjct:  143 LILVMILIANVGLTTLVLPIILVLAGLFGLGIGFFVCVLNTHYRDVQYLVGIILNALFFLVPIVYPISIIPEAHWGIP--IRKMIEYNPVNQFVAAARESAYLLEWSSWNRWALIIFYSVASFTLGWRFFNKRSMQLSED 280          
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A7C7XQR1_9ACTN (Transport permease protein n=6 Tax=root TaxID=1 RepID=A0A7C7XQR1_9ACTN)

HSP 1 Score: 107 bits (268), Expect = 1.170e-25
Identity = 59/140 (42.14%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRD--GVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
            L+ +M +L N+    + L V L+   +FGLG+GF V V N  YRD QYL+GI++N  FFLVPIVY  D++     G+P   R +V+WNP   FV  ARD+ Y +E P     LA   ++ + F +GW +F  +SM +SE+
Sbjct:  166 LLLVMALLGNVGLPTLVLPVVLLLAGLFGLGIGFFVCVLNTHYRDVQYLVGIIINAVFFLVPIVYPIDIIPERHWGLP--VRKIVEWNPINQFVAAARDSAYLVEWPSATRWLALVGYSTVAFGLGWRFFARRSMQLSED 303          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A358A1H5_9ACTN1.390e-5464.75Transport permease protein n=1 Tax=Acidimicrobiace... [more]
A0A6B1AWC8_9ACTN1.980e-5160.43Transport permease protein n=1 Tax=Acidimicrobiace... [more]
A0A2D6UAL4_9ACTN5.840e-5160.14Transport permease protein n=4 Tax=Acidimicrobiace... [more]
A0A2E0SYM4_9ACTN1.590e-4558.70ABC2_membrane domain-containing protein n=1 Tax=Ac... [more]
A0A3M2GIJ2_ACTSX3.480e-3955.32Transport permease protein n=1 Tax=Actinomyces sp.... [more]
A0A6B1EE92_9ACTN1.070e-3757.45Transport permease protein n=2 Tax=Acidimicrobiace... [more]
A0A800LQ96_9ACTN8.890e-2946.51Transport permease protein n=1 Tax=Acidimicrobiia ... [more]
A0A2E1WMJ6_9ACTN3.080e-2743.57Transport permease protein n=1 Tax=Acidimicrobiace... [more]
A0A1Z9JQP1_9ACTN1.390e-2642.14Transport permease protein n=3 Tax=Actinobacteria ... [more]
A0A7C7XQR1_9ACTN1.170e-2542.14Transport permease protein n=6 Tax=root TaxID=1 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112958contigM-pyrifera_M_contig112958:162..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score90.9
Seed ortholog evalue5e-16
Seed eggNOG ortholog1229780.BN381_10123
Preferred namergpC
KEGG koko:K01992
KEGG TC3.A.1
KEGG ModuleM00254
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.ABC-2 type transporter
EggNOG OGs2GP5K@201174,3UXK0@52018,COG1682@1,COG1682@2
COG Functional cat.GM
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size420
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.3130856-CDS-M-pyrifera_M_contig112958:161..5691622815643.3130856-CDS-M-pyrifera_M_contig112958:161..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112958 162..569 -
1692277501.831999-CDS-M-pyrifera_M_contig112958:161..5691692277501.831999-CDS-M-pyrifera_M_contig112958:161..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112958 162..569 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.331505-UTR-M-pyrifera_M_contig112958:569..5811622815643.331505-UTR-M-pyrifera_M_contig112958:569..581Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112958 570..581 -
1692277501.8437617-UTR-M-pyrifera_M_contig112958:569..5811692277501.8437617-UTR-M-pyrifera_M_contig112958:569..581Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112958 570..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112958.2696.1prot_M-pyrifera_M_contig112958.2696.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112958 162..569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112958.2696.1

>prot_M-pyrifera_M_contig112958.2696.1 ID=prot_M-pyrifera_M_contig112958.2696.1|Name=mRNA_M-pyrifera_M_contig112958.2696.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILL
NVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEV
PQWNHLLASAAWAIITFAIGWVYFRDQSMAISEEP*
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mRNA from alignment at M-pyrifera_M_contig112958:162..581-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112958.2696.1 ID=mRNA_M-pyrifera_M_contig112958.2696.1|Name=mRNA_M-pyrifera_M_contig112958.2696.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig112958:162..581- (Macrocystis pyrifera P11B4 male)
CTCATCGCGATCATGATCGTGCTCGCCAACATCTCCTGGACGGTCATCTT CCTCTTCGTCGCCCTCGTGTTCGTCATGATGTTCGGACTCGGCGTGGGCT TCATCGTGTCGGTCTTCAACGCCCGCTACCGCGACACGCAATACCTCATC GGCATCCTCCTCAACGTGTCGTTCTTCCTGGTGCCGATCGTCTACACCCC CGACTTGCTCGATCGCGACGGGGTTCCCGACCTGGCCCGCATTCTCGTGA AATGGAACCCACCGGCGCTGTTCGTCGAGATCGCCCGTGACGCCACCTAC TTCCTCGAGGTGCCGCAATGGAACCATCTGCTCGCCTCGGCGGCCTGGGC CATCATCACGTTCGCGATCGGCTGGGTCTACTTCCGAGACCAGAGCATGG CCATCAGCGAGGAACCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112958:162..581-

>mRNA_M-pyrifera_M_contig112958.2696.1 ID=mRNA_M-pyrifera_M_contig112958.2696.1|Name=mRNA_M-pyrifera_M_contig112958.2696.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig112958:162..581- (Macrocystis pyrifera P11B4 male)
ATGATCGTGCTCGCCAACATCTCCTGGACGGTCATCTTCCTCTTCGTCGC
CCTCGTGTTCGTCATGATGTTCGGACTCGGCGTGGGCTTCATCGTGTCGG
TCTTCAACGCCCGCTACCGCGACACGCAATACCTCATCGGCATCCTCCTC
AACGTGTCGTTCTTCCTGGTGCCGATCGTCTACACCCCCGACTTGCTCGA
TCGCGACGGGGTTCCCGACCTGGCCCGCATTCTCGTGAAATGGAACCCAC
CGGCGCTGTTCGTCGAGATCGCCCGTGACGCCACCTACTTCCTCGAGGTG
CCGCAATGGAACCATCTGCTCGCCTCGGCGGCCTGGGCCATCATCACGTT
CGCGATCGGCTGGGTCTACTTCCGAGACCAGAGCATGGCCATCAGCGAGG
AACCATGAATGATCGTGCTCGCCAACATCTCCTGGACGGTCATCTTCCTC
TTCGTCGCCCTCGTGTTCGTCATGATGTTCGGACTCGGCGTGGGCTTCAT
CGTGTCGGTCTTCAACGCCCGCTACCGCGACACGCAATACCTCATCGGCA
TCCTCCTCAACGTGTCGTTCTTCCTGGTGCCGATCGTCTACACCCCCGAC
TTGCTCGATCGCGACGGGGTTCCCGACCTGGCCCGCATTCTCGTGAAATG
GAACCCACCGGCGCTGTTCGTCGAGATCGCCCGTGACGCCACCTACTTCC
TCGAGGTGCCGCAATGGAACCATCTGCTCGCCTCGGCGGCCTGGGCCATC
ATCACGTTCGCGATCGGCTGGGTCTACTTCCGAGACCAGAGCATGGCCAT
CAGCGAGGAACCATGA
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