mRNA_M-pyrifera_M_contig112949.2693.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: UPI00199341EA (Tim44 domain-containing protein n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=UPI00199341EA) HSP 1 Score: 82.4 bits (202), Expect = 1.240e-18 Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATES 201
+L+AE+ ++ ++IT+KF S LI G GE++EGD K++ VTDIWTF+R + RDPNWKLIATE+
Sbjct: 59 ILDAEMVSRNAQITLKFVSELISATRGKTGEVVEGDPKKVRDVTDIWTFSRDLSSRDPNWKLIATET 125
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: UPI00199547A3 (Tim44 domain-containing protein n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=UPI00199547A3) HSP 1 Score: 82.4 bits (202), Expect = 1.370e-17 Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATES 201
+L+AE+ ++ ++IT+KF S LI G GE++EGD K++ VTDIWTF+R + RDPNWKLIATE+
Sbjct: 170 ILDAEMVSRNAQITLKFVSELISATRGKTGEVVEGDPKKVRDVTDIWTFSRDLSSRDPNWKLIATET 236
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: UPI001EFC4EB3 (Tim44/TimA family putative adaptor protein n=2 Tax=Rhizobium TaxID=379 RepID=UPI001EFC4EB3) HSP 1 Score: 80.9 bits (198), Expect = 4.730e-17 Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 10 AEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATESE 204
A ++ + ++TV+ S LI + EG ++EGD++ + VTDIWTFAR A RDPNWKLIATESE
Sbjct: 166 ANVNGTEEQVTVRIVSQLISATFDKEGSLVEGDQENVADVTDIWTFARDARSRDPNWKLIATESE 230
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: UPI00177FDBBF (Tim44/TimA family putative adaptor protein n=1 Tax=Agrobacterium sp. AGB01 TaxID=2769302 RepID=UPI00177FDBBF) HSP 1 Score: 80.5 bits (197), Expect = 6.760e-17 Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATESE 204
+L+A I +++ +ITV+ S LI Y +GE+++GD + + +V DIWTFAR +DPNWKL+ATESE
Sbjct: 164 ILQASIRDEEEQITVRIASQLISATYNKDGELVDGDAEGVSEVNDIWTFARDVRSKDPNWKLVATESE 231
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: UPI001CFF98F9 (Tim44/TimA family putative adaptor protein n=1 Tax=Neorhizobium sp. T786 TaxID=2883104 RepID=UPI001CFF98F9) HSP 1 Score: 79.7 bits (195), Expect = 1.310e-16 Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 10 AEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATESE 204
A + + + +ITV+ S LI Y +G ++EGD++ + +VTDIWTFAR RDPNWKL+ATESE
Sbjct: 166 ASVKDDEEQITVRIVSQLISATYDKDGGVVEGDQESVAEVTDIWTFARDVRSRDPNWKLVATESE 230
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: A0A2N6AX99_9HYPH (Calcium-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6AX99_9HYPH) HSP 1 Score: 79.7 bits (195), Expect = 1.520e-16 Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATES 201
+++AE+ +++ +TVKF S LI++V +GEI++GD + +V DIWTFAR RDPNWKL+ATE+
Sbjct: 172 IMDAELQGREARVTVKFVSELIQSVRDKDGEIVDGDADMVREVIDIWTFARDTKSRDPNWKLVATET 238
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: A0A2N6B4W1_9HYPH (Calcium-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6B4W1_9HYPH) HSP 1 Score: 79.7 bits (195), Expect = 1.590e-16 Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATES 201
++EA + + +++TV+FKS LI SEG II+GD +++ VTDIWTFAR RDPNWKL+ATE+
Sbjct: 175 IVEAALRDGTAQVTVRFKSQLISVTRDSEGRIIDGDPNKLEDVTDIWTFAREVASRDPNWKLVATET 241
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: A0A7C2RCT6_9HYPH (Tim44/TimA family putative adaptor protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2RCT6_9HYPH) HSP 1 Score: 79.7 bits (195), Expect = 1.640e-16 Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATES 201
++EAE+ ++ + +TVKF S LI GE+I GD K I +VTDIWTFAR + RDPNWKLIAT++
Sbjct: 177 IVEAELKSRVAHLTVKFVSELISATRDKTGEVISGDPKRIREVTDIWTFAREVDSRDPNWKLIATQA 243
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: B9JXU6_AGRVS (Membrane associated transporter protein n=19 Tax=Agrobacterium vitis TaxID=373 RepID=B9JXU6_AGRVS) HSP 1 Score: 79.3 bits (194), Expect = 1.870e-16 Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 10 AEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATESE 204
AE+ +++ +ITV+ S LI Y S+G +IEGD + + V DIWTFAR RDPNWKLIATES+
Sbjct: 167 AEVRDQEVQITVRLVSQLISATYDSQGAVIEGDAESVGDVNDIWTFARDTRSRDPNWKLIATESD 231
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: A0A657LVI5_9HYPH (Calcium-binding protein n=1 Tax=Pararhizobium antarcticum TaxID=1798805 RepID=A0A657LVI5_9HYPH) HSP 1 Score: 79.3 bits (194), Expect = 1.930e-16 Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATESES 207
M+ AE+ + ++ ITV+ S LI Y G II+GD + + +V D+WTFAR RDPNWKLIATESE+
Sbjct: 166 MVHAEVKDSEANITVRIISQLISATYDKAGTIIDGDAEAVSEVNDLWTFARDTRSRDPNWKLIATESEN 234 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112949.2693.1 >prot_M-pyrifera_M_contig112949.2693.1 ID=prot_M-pyrifera_M_contig112949.2693.1|Name=mRNA_M-pyrifera_M_contig112949.2693.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFAback to top mRNA from alignment at M-pyrifera_M_contig112949:368..577- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112949.2693.1 ID=mRNA_M-pyrifera_M_contig112949.2693.1|Name=mRNA_M-pyrifera_M_contig112949.2693.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig112949:368..577- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112949:368..577- >mRNA_M-pyrifera_M_contig112949.2693.1 ID=mRNA_M-pyrifera_M_contig112949.2693.1|Name=mRNA_M-pyrifera_M_contig112949.2693.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig112949:368..577- (Macrocystis pyrifera P11B4 male)back to top |