mRNA_M-pyrifera_M_contig112923.2686.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A6B1B1R2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B1R2_9ACTN) HSP 1 Score: 122 bits (307), Expect = 6.680e-32 Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 1
Query: 1 MTQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
MT+LLDAARDLRT LD EGAKAEA+G+ MTDEAV+LC+EAGLYG L REVGGAELS +SLDVFTELARADGSIGW
Sbjct: 1 MTELLDAARDLRTTLDEEGAKAEAEGTHMTDEAVKLCREAGLYGVLSPREVGGAELSFGESLDVFTELARADGSIGW 77
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A7X5WQL5_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WQL5_9ACTN) HSP 1 Score: 113 bits (283), Expect = 1.930e-28 Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 1
Query: 1 MTQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
MT LLDAARDL + LDAEGAKAE+ G+PMTDEAVRLC+EAGLY +V R+VGGAEL D LDVF E+ARADGSIGW
Sbjct: 1 MTALLDAARDLWSQLDAEGAKAESAGTPMTDEAVRLCQEAGLYTTIVPRDVGGAELPLVDCLDVFAEIARADGSIGW 77
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A3C0HMX4_9ACTN (Acyl-CoA_dh_N domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HMX4_9ACTN) HSP 1 Score: 102 bits (254), Expect = 2.800e-26 Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 1
Query: 1 MTQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
MT LLDAARDL LDAE A AE G+PMTD AV LC++AGLYG ++ R+ GGAEL+ +SLDVF ELARADGS GW
Sbjct: 1 MTALLDAARDLFETLDAEAAIAEEAGTPMTDRAVALCRDAGLYGTMITRDAGGAELTIGESLDVFKELARADGSTGW 77
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A2D6U8C9_9ACTN (Acyl-CoA_dh_2 domain-containing protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U8C9_9ACTN) HSP 1 Score: 98.2 bits (243), Expect = 1.260e-22 Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 1 MTQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
MT LLDAARDL LDAE A AE G+PMTD AV LC++AG YG ++ R+ GGAEL+ +SLDVF LARADGS GW
Sbjct: 1 MTXLLDAARDLFETLDAEAAIAEEAGTPMTDRAVALCRDAGXYGTMITRDAGGAELTIGESLDVFKXLARADGSTGW 77
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A523JU15_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523JU15_9DELT) HSP 1 Score: 78.2 bits (191), Expect = 2.980e-15 Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 4 TQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
T LLDAAR LRT +DA +KA +P+ E V ++AGL+G + R+VGGAEL D +DVF E+ARADGS GW
Sbjct: 3 TDLLDAARSLRTTIDANASKA--GNAPIPRETVEALQQAGLFGVMCPRDVGGAELPILDVIDVFAEVARADGSAGW 76
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A6B1EDT4_9ACTN (Acyl-CoA_dh_2 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EDT4_9ACTN) HSP 1 Score: 76.6 bits (187), Expect = 1.060e-14 Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 4 TQLLDAARDLRTALDAEGAKAEADGSPMTDEAV-RLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
++LL+ AR+LR+ +DA GA A A G+ +AV C EAGLYG L R VGGAEL + LDVF E+A ADGS+GW
Sbjct: 3 SELLERARELRSTIDAAGAAASASGATTLPQAVVDACFEAGLYGTLSPRAVGGAELPIGECLDVFAEVAYADGSVGW 79
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A6B0WN38_9ACTN (Acyl-CoA_dh_2 domain-containing protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WN38_9ACTN) HSP 1 Score: 75.9 bits (185), Expect = 2.010e-14 Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 4 TQLLDAARDLRTALDAEGAKA-EADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
++LL+ AR+LR+ +DA GA A E+ + + E V C EAGLYG L R VGGAEL D LDVF E+A DGS+GW
Sbjct: 3 SELLERARELRSTVDAAGAAAAESGATALPQELVSACFEAGLYGTLSPRAVGGAELPIDDCLDVFAEVAYGDGSVGW 79
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A7K2E8F7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2E8F7_9ACTN) HSP 1 Score: 70.5 bits (171), Expect = 4.300e-14 Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 4 TQLLDAARDLRTALDAEGAKA-EADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADG 219
++LL+ ARDLR A+DA GA A E + + E V +C EAGLYGAL R VGGAEL D LDVF E+A DG
Sbjct: 3 SELLERARDLRPAVDAGGAAAAETGATALPQELVSVCFEAGLYGALSPRAVGGAELPIDDCLDVFAEVAYGDG 75
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A6B1BXE3_9ACTN (Acyl-CoA_dh_2 domain-containing protein n=8 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1BXE3_9ACTN) HSP 1 Score: 62.8 bits (151), Expect = 9.720e-10 Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query: 4 TQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
++ LD AR+LR+ +D AK DG P+ E V +A L+ +V VGG E+ D +DV+ E++RADGS+GW
Sbjct: 3 SEYLDRARELRSLIDENAAKT--DGLPIPQETVNALVDAELHKVMVPEAVGGIEIPINDCIDVWAEISRADGSVGW 76
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A7K0V2R5_9ACTN (Uncharacterized protein n=5 Tax=root TaxID=1 RepID=A0A7K0V2R5_9ACTN) HSP 1 Score: 57.4 bits (137), Expect = 7.960e-8 Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query: 22 ARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
AR LR+ ++ E + E+ MT + V+ E+GL+G +V +GG+E SL+VF ELA ADGSIGW
Sbjct: 22 ARGLRSFIEQEAGRTES-ARTMTADLVKAFSESGLFGLMVPTSLGGSEADTRTSLEVFEELAYADGSIGW 90 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112923.2686.1 >prot_M-pyrifera_M_contig112923.2686.1 ID=prot_M-pyrifera_M_contig112923.2686.1|Name=mRNA_M-pyrifera_M_contig112923.2686.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp MTQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREback to top mRNA from alignment at M-pyrifera_M_contig112923:3..233- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112923.2686.1 ID=mRNA_M-pyrifera_M_contig112923.2686.1|Name=mRNA_M-pyrifera_M_contig112923.2686.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig112923:3..233- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112923:3..233- >mRNA_M-pyrifera_M_contig112923.2686.1 ID=mRNA_M-pyrifera_M_contig112923.2686.1|Name=mRNA_M-pyrifera_M_contig112923.2686.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig112923:3..233- (Macrocystis pyrifera P11B4 male)back to top |