mRNA_M-pyrifera_M_contig112910.2684.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112910.2684.1
Unique NamemRNA_M-pyrifera_M_contig112910.2684.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Match: A0A078BAW4_STYLE (Coatomer subunit beta n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078BAW4_STYLE)

HSP 1 Score: 71.6 bits (174), Expect = 8.340e-13
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 EVVMTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTTIKGAVGSVPFLTVKSEEEEAEEAEK 234
            E++  +PEHRQ+I  ++ ++  DI+S  V+R+ALW++GEY+ +  D+D AF TIK  VGS+P    ++ + + +E  K
Sbjct:  442 EIIEVHPEHRQSIFEKICDSFEDIRSHLVIRVALWIIGEYATTQTDVDRAFDTIKKNVGSLPLYKAEANDNQNQEETK 519          
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Match: L8GRY6_ACACA (Coatomer subunit beta n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GRY6_ACACA)

HSP 1 Score: 71.2 bits (173), Expect = 1.140e-12
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 EVVMTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTTIKGAVGSVPFLTVKSEEE 213
            EV  TYPE R++I R+L  +L  I +S+V R ALWV+GEY+ + +DID AF+T+KG +G++P +   SE+E
Sbjct:  422 EVAETYPELRESILRKLFLSLKHITASSVYRTALWVLGEYALTTDDIDQAFSTLKGEIGALPLVKDGSEDE 492          
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Match: A0A8J8P1P6_HALGN (Coatomer subunit beta n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8P1P6_HALGN)

HSP 1 Score: 69.3 bits (168), Expect = 5.420e-12
Identity = 33/78 (42.31%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 EVVMTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTTIKGAVGSVPFLTVKSEE--EEAEEA 228
            EV+  + EHRQAI  ++ ++  DI++  V+R+ALW++GEY+ S +D+D AF TIK  +G++P     +E+  EE++EA
Sbjct:  442 EVIEVHQEHRQAIFDKICDSFEDIRAHLVIRVALWILGEYASSQKDVDKAFETIKRNIGALPIFAPATEQTGEESKEA 519          
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Match: J9HVP7_9SPIT (Coatomer subunit beta n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HVP7_9SPIT)

HSP 1 Score: 68.6 bits (166), Expect = 1.010e-11
Identity = 29/68 (42.65%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 EVVMTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTTIKGAVGSVPFLTVKS 204
            E++  +PEHRQAI  ++ +   DI+S  V+R+ALW++GEY+ S  D++ AF TIK  +G++P  +  S
Sbjct:  440 EIIEVHPEHRQAIFDKICDNFEDIRSHLVIRVALWIIGEYATSQRDVERAFDTIKKNIGALPLFSEDS 507          
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Match: I0YWB4_COCSC (Coatomer subunit beta n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YWB4_COCSC)

HSP 1 Score: 67.0 bits (162), Expect = 3.520e-11
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 EVVMTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTTIKGAVGSVPFLTVKSEEEEAEEAE 231
            E++ T P+ R  I  RL++    I+SS V   ALW++ EYS S+EDI  A   I+  +GS+PF+  K E+++AEE E
Sbjct:  423 EIMETNPKLRPTILERLIDTFSQIRSSRVCSCALWILSEYSTSVEDIHAALEVIRSGLGSMPFIKDKDEKDDAEEVE 499          
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Match: A0A7S3CTS9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CTS9_9SPIT)

HSP 1 Score: 66.6 bits (161), Expect = 4.540e-11
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 EVVMTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTTIKGAVGSVPFL 192
            EV   +PEH++A+ + L  ++  IK+  VLR+ +W+VGEYSE + DID AF  IK  +GS+P  
Sbjct:  310 EVFEAHPEHQKALLQHLFNSIDSIKNHLVLRVTIWIVGEYSEQLSDIDQAFEAIKRNIGSLPIF 373          
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Match: A0A4D8ZSP5_SALSN (Coatomer subunit beta n=15 Tax=Lamiales TaxID=4143 RepID=A0A4D8ZSP5_SALSN)

HSP 1 Score: 65.9 bits (159), Expect = 8.990e-11
Identity = 29/78 (37.18%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 EVVMTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTTIKGAVGSVPFLTVKSEEEEAEEAEK 234
            E++ T P+ R +I  RLL+    I+++ V   ALW++GEYS S+ +++ A +TIK  +G +PF ++   EE+A+ ++K
Sbjct:  421 EIIETNPKLRVSIVTRLLDTFYQIRAARVCSCALWIIGEYSLSLSEVESAISTIKQCLGDLPFFSISENEEDADSSKK 498          
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Match: A0A5A7R4W3_STRAF (Coatomer n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R4W3_STRAF)

HSP 1 Score: 65.1 bits (157), Expect = 1.700e-10
Identity = 29/78 (37.18%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 EVVMTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTTIKGAVGSVPFLTVKSEEEEAEEAEK 234
            E++ T P+ R ++  RLL+    I+++ V   ALW++GEYS S+ +++ A  TIK  +G +PF ++  EEE A+ ++K
Sbjct:  421 EIIETNPKLRVSVITRLLDTFYQIRAARVCSCALWIIGEYSLSLSEVESAIATIKQCLGQLPFFSLSEEEESADSSKK 498          
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Match: A0A316YUF5_9BASI (Coatomer subunit beta n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YUF5_9BASI)

HSP 1 Score: 64.7 bits (156), Expect = 2.300e-10
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 EVVMTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTTIKGAVGSVPFLTVKSEEEEAEEAE 231
            EVV  +P+ R +I  +LL    DIKS  V R ALW+VGEY ES+ED+  A   I+  VG VP L   +EE   E+AE
Sbjct:  422 EVVEKFPDLRSSILEKLLRTFGDIKSGKVFRGALWIVGEYCESIEDVQEAMQQIRKVVGEVPILA--AEERLLEQAE 496          
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Match: A0A316ZAD6_9BASI (Coatomer subunit beta n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZAD6_9BASI)

HSP 1 Score: 63.9 bits (154), Expect = 4.290e-10
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 EVVMTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTTIKGAVGSVPFLTVK 201
            EVV  +P+ R +I  +LL+   DIKS  V R ALW+VGEY+ S+ED+  A   I+  VG VP L  +
Sbjct:  422 EVVEKFPDLRSSIVEKLLQTFADIKSGKVFRGALWIVGEYAGSVEDVKEAMQQIRKVVGEVPILAAE 488          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112910.2684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078BAW4_STYLE8.340e-1339.74Coatomer subunit beta n=1 Tax=Stylonychia lemnae T... [more]
L8GRY6_ACACA1.140e-1249.30Coatomer subunit beta n=1 Tax=Acanthamoeba castell... [more]
A0A8J8P1P6_HALGN5.420e-1242.31Coatomer subunit beta n=1 Tax=Halteria grandinella... [more]
J9HVP7_9SPIT1.010e-1142.65Coatomer subunit beta n=1 Tax=Oxytricha trifallax ... [more]
I0YWB4_COCSC3.520e-1142.86Coatomer subunit beta n=2 Tax=Coccomyxa TaxID=4189... [more]
A0A7S3CTS9_9SPIT4.540e-1145.31Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
A0A4D8ZSP5_SALSN8.990e-1137.18Coatomer subunit beta n=15 Tax=Lamiales TaxID=4143... [more]
A0A5A7R4W3_STRAF1.700e-1037.18Coatomer n=1 Tax=Striga asiatica TaxID=4170 RepID=... [more]
A0A316YUF5_9BASI2.300e-1048.05Coatomer subunit beta n=1 Tax=Acaromyces ingoldii ... [more]
A0A316ZAD6_9BASI4.290e-1046.27Coatomer subunit beta n=1 Tax=Tilletiopsis washing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112910contigM-pyrifera_M_contig112910:64..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue6.1e-08
Seed eggNOG ortholog248742.XP_005647227.1
Preferred nameBCOP
KEGG koko:K17301
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0005911,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0008150,GO:0009506,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGs34GX1@3041,37KVE@33090,COG5096@1,KOG1058@2759
COG Functional cat.U
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons1
Model size234
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.7203033-CDS-M-pyrifera_M_contig112910:63..2881622815642.7203033-CDS-M-pyrifera_M_contig112910:63..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112910 64..288 -
1692277501.5726106-CDS-M-pyrifera_M_contig112910:63..2881692277501.5726106-CDS-M-pyrifera_M_contig112910:63..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112910 64..288 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.731981-UTR-M-pyrifera_M_contig112910:288..2971622815642.731981-UTR-M-pyrifera_M_contig112910:288..297Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112910 289..297 -
1692277501.5895708-UTR-M-pyrifera_M_contig112910:288..2971692277501.5895708-UTR-M-pyrifera_M_contig112910:288..297Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112910 289..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112910.2684.1prot_M-pyrifera_M_contig112910.2684.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112910 64..288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112910.2684.1

>prot_M-pyrifera_M_contig112910.2684.1 ID=prot_M-pyrifera_M_contig112910.2684.1|Name=mRNA_M-pyrifera_M_contig112910.2684.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MTYPEHRQAITRRLLEALCDIKSSAVLRIALWVVGEYSESMEDIDFAFTT
IKGAVGSVPFLTVKSEEEEAEEAEK
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mRNA from alignment at M-pyrifera_M_contig112910:64..297-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112910.2684.1 ID=mRNA_M-pyrifera_M_contig112910.2684.1|Name=mRNA_M-pyrifera_M_contig112910.2684.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig112910:64..297- (Macrocystis pyrifera P11B4 male)
GAGGTGGTGATGACGTACCCCGAGCACAGGCAGGCGATCACGAGGCGGCT GCTCGAGGCCCTGTGCGACATCAAGAGCTCTGCAGTGCTGCGCATTGCTC TCTGGGTGGTGGGAGAGTACAGCGAATCGATGGAAGACATCGACTTCGCC TTCACCACCATCAAGGGAGCCGTCGGCTCCGTGCCATTCCTCACCGTCAA GAGCGAGGAGGAGGAGGCAGAGGAGGCAGAGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112910:64..297-

>mRNA_M-pyrifera_M_contig112910.2684.1 ID=mRNA_M-pyrifera_M_contig112910.2684.1|Name=mRNA_M-pyrifera_M_contig112910.2684.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig112910:64..297- (Macrocystis pyrifera P11B4 male)
ATGACGTACCCCGAGCACAGGCAGGCGATCACGAGGCGGCTGCTCGAGGC
CCTGTGCGACATCAAGAGCTCTGCAGTGCTGCGCATTGCTCTCTGGGTGG
TGGGAGAGTACAGCGAATCGATGGAAGACATCGACTTCGCCTTCACCACC
ATCAAGGGAGCCGTCGGCTCCGTGCCATTCCTCACCGTCAAGAGCGAGGA
GGAGGAGGCAGAGGAGGCAGAGAAGATGACGTACCCCGAGCACAGGCAGG
CGATCACGAGGCGGCTGCTCGAGGCCCTGTGCGACATCAAGAGCTCTGCA
GTGCTGCGCATTGCTCTCTGGGTGGTGGGAGAGTACAGCGAATCGATGGA
AGACATCGACTTCGCCTTCACCACCATCAAGGGAGCCGTCGGCTCCGTGC
CATTCCTCACCGTCAAGAGCGAGGAGGAGGAGGCAGAGGAGGCAGAGAAG
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