mRNA_M-pyrifera_M_contig112907.2682.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112907.2682.1
Unique NamemRNA_M-pyrifera_M_contig112907.2682.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Match: UPI0009A35FF3 (WD repeat-containing protein 5-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A35FF3)

HSP 1 Score: 108 bits (271), Expect = 8.680e-28
Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:   58 SRIWDASKGMCLKTLNIDDNNSPVSFVKFSPNGKFILASTLDSTLXXXXXXXXXXXXXYTGHRNEMYCCFATFSVTNXXXXXXXXXXXXXXXXXXXSKAVVQKLTGHT 381
            SRIWD + G CLKTL IDD+N PVSFVKFSPNGK+ILA+TLD+TL  XXXXXXXXXXXYTGH+NE YC FA FSVT    XXXXXXXXXXXXX   +K +VQKL GHT
Sbjct:   17 SRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLXXXXXXXXXXXYTGHKNEKYCIFANFSVTGGKWXXXXXXXXXXXXXNLQTKEIVQKLQGHT 123
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BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Match: UPI001C4B3C5D (WD repeat-containing protein 5-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4B3C5D)

HSP 1 Score: 105 bits (263), Expect = 6.250e-27
Identity = 65/107 (60.75%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:   61 RIWDASKGMCLKTLNIDDNNSPVSFVKFSPNGKFILASTLDSTLXXXXXXXXXXXXXYTGHRNEMYCCFATFSVTNXXXXXXXXXXXXXXXXXXXSKAVVQKLTGHT 381
            RIWD + G CLKTL IDD+N PVSFVKFSPNGK+ILA+TLD+TL  XXXXXXXXXX Y+GH+NE YC FA FSVT                    +K +VQKL GHT
Sbjct:    1 RIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLXXXXXXXXXXTYSGHKNEKYCIFANFSVTGGKWIVSGSEDSMVYIWNLQTKEIVQKLQGHT 106
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BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Match: A0A0B6ZN80_9EUPU (Uncharacterized protein (Fragment) n=3 Tax=Protostomia TaxID=33317 RepID=A0A0B6ZN80_9EUPU)

HSP 1 Score: 105 bits (261), Expect = 1.710e-26
Identity = 80/106 (75.47%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:   64 IWDASKGMCLKTLNIDDNNSPVSFVKFSPNGKFILASTLDSTLXXXXXXXXXXXXXYTGHRNEMYCCFATFSVTNXXXXXXXXXXXXXXXXXXXSKAVVQKLTGHT 381
            IWD + G CLKTL IDD+N PVSFVKFSPNGK+ILA+TLD+TL  XXXXXXXXXXXY GHRNE YC FA FSVT    XXXXXXXXXXXXX   +K VVQKL GHT
Sbjct:    1 IWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLXXXXXXXXXXXYLGHRNEKYCVFANFSVTGGKWXXXXXXXXXXXXXNLQTKEVVQKLAGHT 105
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BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Match: A0A401RL75_CHIPU (Uncharacterized protein (Fragment) n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401RL75_CHIPU)

HSP 1 Score: 107 bits (267), Expect = 3.400e-25
Identity = 67/107 (62.62%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:   61 RIWDASKGMCLKTLNIDDNNSPVSFVKFSPNGKFILASTLDSTLXXXXXXXXXXXXXYTGHRNEMYCCFATFSVTNXXXXXXXXXXXXXXXXXXXSKAVVQKLTGHT 381
            RIWD + G CLKTL IDD+N PVSFVKFSPNGK+ILA+TLD+TL  XXXXXXXXXXXYTGH+NE YC FA FSVT                    +K +VQKL GHT
Sbjct:  245 RIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLXXXXXXXXXXXYTGHKNEKYCIFANFSVTGGKWIVSGSEDNFVYIWNLQTKEIVQKLQGHT 350
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BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Match: A0A8J2MLL8_COTCN (Similar to wdr5: WD repeat-containing protein 5 (Xenopus tropicalis) n=2 Tax=Braconidae TaxID=7402 RepID=A0A8J2MLL8_COTCN)

HSP 1 Score: 108 bits (271), Expect = 3.760e-25
Identity = 71/115 (61.74%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:   37 SPLLTRGSRIWDASKGMCLKTLNIDDNNSPVSFVKFSPNGKFILASTLDSTLXXXXXXXXXXXXXYTGHRNEMYCCFATFSVTNXXXXXXXXXXXXXXXXXXXSKAVVQKLTGHT 381
            S +++  SRIWD + G CLKTL IDD+N PVSFVKFSPNGK+ILA+TLD+TL XXXXXXXXXXXXYT HRNE YC FA FSVT                    +K VVQKL GHT
Sbjct:  201 SIIISLNSRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKXXXXXXXXXXXXYTSHRNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEVVQKLQGHT 314
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BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Match: S9YV77_CAMFR (WD repeat-containing protein 5 n=1 Tax=Camelus ferus TaxID=419612 RepID=S9YV77_CAMFR)

HSP 1 Score: 99.8 bits (247), Expect = 8.820e-23
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:   55 GSRIWDASKGMCLKTLNIDDNNSPVSFVKFSPNGKFILASTLDSTLXXXXXXXXXXXXXYTGHRNEMYCCFATFSVT 285
            G RIWD + G CLKTL IDD+N PVSFVKFSPNGK+ILA+TLD+TL  XXXXXXXXXXXYTGH+NE YC FA FSVT
Sbjct:  167 GCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLXXXXXXXXXXXYTGHKNEKYCIFANFSVT 242
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BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Match: A0A0L7K5C8_9NEOP (Will die slowly (Fragment) n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7K5C8_9NEOP)

HSP 1 Score: 95.9 bits (237), Expect = 1.140e-22
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:   61 RIWDASKGMCLKTLNIDDNNSPVSFVKFSPNGKFILASTLDSTLXXXXXXXXXXXXXYTGHRNEMYCCFATFSVT 285
            RIWD + G CLKTL IDD+N PVSFVKFSPNGK+ILA+TLD+TL  XXXXXXXXXX Y GH+NE YC FA FSVT
Sbjct:    1 RIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLXXXXXXXXXXTYNGHKNEKYCIFANFSVT 74
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BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Match: A0A0L7LPH8_9NEOP (Will die slowly n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7LPH8_9NEOP)

HSP 1 Score: 98.6 bits (244), Expect = 1.140e-22
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   55 GSRIWDASKGMCLKTLNIDDNNSPVSFVKFSPNGKFILASTLDSTLXXXXXXXXXXXXXYTGHRNEMYCCFATFSVT 285
            G+RIWD + G CLKTL IDD+N PVSFVKFSPNGK+ILA+TLD+TL  XXXXXXXXXX Y GH+NE YC FA FSVT
Sbjct:   89 GNRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLXXXXXXXXXXTYNGHKNEKYCIFANFSVT 164
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BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Match: B3SEK3_TRIAD (Uncharacterized protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3SEK3_TRIAD)

HSP 1 Score: 96.7 bits (239), Expect = 3.820e-22
Identity = 71/115 (61.74%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:   58 SRIWDASKGMCLKT-------LNIDDNNSPVSFVKFSPNGKFILASTLDSTLXXXXXXXXXXXXXYTGHRNEMYCCFATFSVTNXXXXXXXXXXXXXXXXXXXSKAVVQKLTGHT 381
            +RIWD + G CLKT       L  DD+N PVSFVKFSPNGK+ILA+TLD+TL             Y GH+NE YC FA+FSVT  XXXXXXXXXXXXXXXXXX   VVQKL+GH+
Sbjct:   89 TRIWDTASGQCLKTIIDQHTPLISDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYRGHKNEKYCIFASFSVTGGXXXXXXXXXXXXXXXXXXXXXVVQKLSGHS 203
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BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Match: A0A367IQ57_RHIST (WD repeat-containing protein 5 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367IQ57_RHIST)

HSP 1 Score: 94.0 bits (232), Expect = 4.710e-22
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   61 RIWDASKGMCLKTLNIDDNNSPVSFVKFSPNGKFILASTLDSTLXXXXXXXXXXXXXYTGHRNEMYCCFATFSVT 285
            RIWD + G CLKTL +DD+N PVSFVKFSPNGK+ILASTLD+TL             Y GH N  YC FA+FSVT
Sbjct:    1 RIWDTASGQCLKTL-VDDDNPPVSFVKFSPNGKYILASTLDNTLRLWNYHTGKCLKTYRGHENSKYCIFASFSVT 74
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112907.2682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009A35FF38.680e-2875.00WD repeat-containing protein 5-like n=1 Tax=Rhinco... [more]
UPI001C4B3C5D6.250e-2760.75WD repeat-containing protein 5-like n=1 Tax=Plectr... [more]
A0A0B6ZN80_9EUPU1.710e-2675.47Uncharacterized protein (Fragment) n=3 Tax=Protost... [more]
A0A401RL75_CHIPU3.400e-2562.62Uncharacterized protein (Fragment) n=1 Tax=Chilosc... [more]
A0A8J2MLL8_COTCN3.760e-2561.74Similar to wdr5: WD repeat-containing protein 5 (X... [more]
S9YV77_CAMFR8.820e-2377.92WD repeat-containing protein 5 n=1 Tax=Camelus fer... [more]
A0A0L7K5C8_9NEOP1.140e-2276.00Will die slowly (Fragment) n=1 Tax=Operophtera bru... [more]
A0A0L7LPH8_9NEOP1.140e-2275.32Will die slowly n=1 Tax=Operophtera brumata TaxID=... [more]
B3SEK3_TRIAD3.820e-2261.74Uncharacterized protein n=1 Tax=Trichoplax adhaere... [more]
A0A367IQ57_RHIST4.710e-2261.33WD repeat-containing protein 5 (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112907contigM-pyrifera_M_contig112907:187..567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score96.7
Seed ortholog evalue8.5e-18
Seed eggNOG ortholog10228.TriadP51237
Preferred nameWDR5
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categorysignal peptide
GOsGO:0000123,GO:0001085,GO:0001501,GO:0001654,GO:0002682,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005737,GO:0005815,GO:0005856,GO:0005929,GO:0006109,GO:0006111,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007482,GO:0007568,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008340,GO:0008757,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010259,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0035216,GO:0035295,GO:0035947,GO:0035948,GO:0036064,GO:0036211,GO:0042054,GO:0042176,GO:0042393,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043414,GO:0043543,GO:0043687,GO:0043966,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044545,GO:0044665,GO:0044666,GO:0044782,GO:0045595,GO:0045637,GO:0045652,GO:0045722,GO:0045732,GO:0045862,GO:0045893,GO:0045913,GO:0045935,GO:0045944,GO:0048188,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048666,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0060255,GO:0060271,GO:0060290,GO:0060429,GO:0061136,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0070925,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140030,GO:0140034,GO:0140096,GO:1900402,GO:1901564,GO:1901800,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903706,GO:1990234,GO:2000026,GO:2000058,GO:2000060,GO:2000112,GO:2001141
EggNOG free text desc.WD repeat-containing protein 5
EggNOG OGs38D84@33154,3BCYJ@33208,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.6383052-CDS-M-pyrifera_M_contig112907:186..5671622815642.6383052-CDS-M-pyrifera_M_contig112907:186..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112907 187..567 +
1692277501.5379395-CDS-M-pyrifera_M_contig112907:186..5671692277501.5379395-CDS-M-pyrifera_M_contig112907:186..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112907 187..567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112907.2682.1prot_M-pyrifera_M_contig112907.2682.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112907 187..567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112907.2682.1

>prot_M-pyrifera_M_contig112907.2682.1 ID=prot_M-pyrifera_M_contig112907.2682.1|Name=mRNA_M-pyrifera_M_contig112907.2682.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
LLSLVSCFSLSLSPLLTRGSRIWDASKGMCLKTLNIDDNNSPVSFVKFSP
NGKFILASTLDSTLRLWNHSSGKCLKTYTGHRNEMYCCFATFSVTNGKWI
VSGSEDHCIYIWDLQSKAVVQKLTGHT
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mRNA from alignment at M-pyrifera_M_contig112907:187..567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112907.2682.1 ID=mRNA_M-pyrifera_M_contig112907.2682.1|Name=mRNA_M-pyrifera_M_contig112907.2682.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig112907:187..567+ (Macrocystis pyrifera P11B4 male)
CTCTTGTCTCTTGTCTCTTGTTTCTCTCTCTCTCTCTCCCCCCTACTGAC
CCGTGGCAGCCGGATCTGGGATGCGAGCAAGGGTATGTGCCTGAAGACCT
TGAACATCGACGACAACAACTCTCCGGTGTCGTTTGTGAAGTTCTCGCCC
AACGGGAAGTTCATCCTTGCCTCTACGCTGGACAGCACGCTGCGCTTGTG
GAACCACTCGAGCGGCAAGTGCCTCAAGACCTACACGGGCCACCGCAACG
AGATGTACTGCTGCTTCGCCACCTTCTCCGTCACCAACGGCAAGTGGATC
GTCAGCGGCTCCGAGGACCACTGCATATACATCTGGGACCTCCAGTCCAA
GGCCGTCGTCCAGAAGCTCACAGGCCACACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112907:187..567+

>mRNA_M-pyrifera_M_contig112907.2682.1 ID=mRNA_M-pyrifera_M_contig112907.2682.1|Name=mRNA_M-pyrifera_M_contig112907.2682.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig112907:187..567+ (Macrocystis pyrifera P11B4 male)
CTCTTGTCTCTTGTCTCTTGTTTCTCTCTCTCTCTCTCCCCCCTACTGAC
CCGTGGCAGCCGGATCTGGGATGCGAGCAAGGGTATGTGCCTGAAGACCT
TGAACATCGACGACAACAACTCTCCGGTGTCGTTTGTGAAGTTCTCGCCC
AACGGGAAGTTCATCCTTGCCTCTACGCTGGACAGCACGCTGCGCTTGTG
GAACCACTCGAGCGGCAAGTGCCTCAAGACCTACACGGGCCACCGCAACG
AGATGTACTGCTGCTTCGCCACCTTCTCCGTCACCAACGGCAAGTGGATC
GTCAGCGGCTCCGAGGACCACTGCATATACATCTGGGACCTCCAGTCCAA
GGCCGTCGTCCAGAAGCTCACAGGCCACACACTCTTGTCTCTTGTCTCTT
GTTTCTCTCTCTCTCTCTCCCCCCTACTGACCCGTGGCAGCCGGATCTGG
GATGCGAGCAAGGGTATGTGCCTGAAGACCTTGAACATCGACGACAACAA
CTCTCCGGTGTCGTTTGTGAAGTTCTCGCCCAACGGGAAGTTCATCCTTG
CCTCTACGCTGGACAGCACGCTGCGCTTGTGGAACCACTCGAGCGGCAAG
TGCCTCAAGACCTACACGGGCCACCGCAACGAGATGTACTGCTGCTTCGC
CACCTTCTCCGTCACCAACGGCAAGTGGATCGTCAGCGGCTCCGAGGACC
ACTGCATATACATCTGGGACCTCCAGTCCAAGGCCGTCGTCCAGAAGCTC
ACAGGCCACACA
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