mRNA_M-pyrifera_M_contig112899.2679.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Match: D1J784_ECTSI (Light-independent protochlorophyllide reductase subunit B n=43 Tax=Phaeophyceae TaxID=2870 RepID=D1J784_ECTSI) HSP 1 Score: 389 bits (999), Expect = 4.710e-132 Identity = 191/193 (98.96%), Postives = 191/193 (98.96%), Query Frame = 1
Query: 1 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQTELTKIQGFIRGKI 579
FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQ ELTKI GFIRGKI
Sbjct: 301 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQAELTKIPGFIRGKI 493
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Match: A0A5B9RCD6_9PHAE (Light-independent protochlorophyllide reductase subunit B n=2 Tax=Laminaria TaxID=33637 RepID=A0A5B9RCD6_9PHAE) HSP 1 Score: 378 bits (970), Expect = 3.270e-130 Identity = 184/193 (95.34%), Postives = 188/193 (97.41%), Query Frame = 1
Query: 1 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQTELTKIQGFIRGKI 579
FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILT+EMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKE+LSAGLSV S+ +IKWNLESQ ELTKI GFIRGKI
Sbjct: 121 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTKEMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEVLSAGLSVTSQNSEIKWNLESQAELTKIPGFIRGKI 313
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Match: A0A141BSC8_9PHAE (Light-independent protochlorophyllide reductase subunit B n=12 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSC8_9PHAE) HSP 1 Score: 364 bits (935), Expect = 1.580e-122 Identity = 175/193 (90.67%), Postives = 185/193 (95.85%), Query Frame = 1
Query: 1 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQTELTKIQGFIRGKI 579
FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGI+VVWAGTYCKYDKSWFEKE+GDLC+EI+ITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKE+LS LSV + +IKWNLE+Q+EL KI GF+RGKI
Sbjct: 289 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGISVVWAGTYCKYDKSWFEKEIGDLCEEIIITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEVLSPTLSVTNAPFEIKWNLEAQSELKKIPGFVRGKI 481
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Match: A0A2I4Q2A6_9PHAE (Light-independent protochlorophyllide reductase subunit B n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A6_9PHAE) HSP 1 Score: 358 bits (919), Expect = 3.680e-120 Identity = 172/193 (89.12%), Postives = 183/193 (94.82%), Query Frame = 1
Query: 1 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQTELTKIQGFIRGKI 579
FSRSIDCQNLTGKKA+VFGDSTH+AAMTKILT+EMGINV+WAGTYCKYD++WFE+EVGDLC+EIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPF GYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKE+LS GLS DSE I WN+ESQ EL KI GF+RGKI
Sbjct: 289 FSRSIDCQNLTGKKAVVFGDSTHSAAMTKILTKEMGINVIWAGTYCKYDRAWFEREVGDLCNEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFFGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEVLSIGLSYDSE---ITWNIESQAELQKIPGFVRGKI 478
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Match: A0A8E6D5T3_9PHAE (Light-independent protochlorophyllide reductase subunit B n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5T3_9PHAE) HSP 1 Score: 342 bits (876), Expect = 1.200e-113 Identity = 164/193 (84.97%), Postives = 178/193 (92.23%), Query Frame = 1
Query: 1 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQTELTKIQGFIRGKI 579
FSRSIDCQNLTGKKAIVFGDSTH+AAMTKILT+EMGINVVWAGTYCKYDKSWFEKEVG +CDE++ITDDHNLI DLIAKVEPAVIFGTQMERHV KRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKE++++ LS D I W+ E++ EL KI GF+RG+I
Sbjct: 289 FSRSIDCQNLTGKKAIVFGDSTHSAAMTKILTKEMGINVVWAGTYCKYDKSWFEKEVGGMCDEVIITDDHNLIADLIAKVEPAVIFGTQMERHVGKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEVINSSLSNDRH---IIWDSEAKLELAKIPGFVRGRI 478
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Match: A0A7S6ZPB4_9STRA (Light-independent protochlorophyllide reductase subunit B n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB4_9STRA) HSP 1 Score: 339 bits (870), Expect = 9.980e-113 Identity = 162/193 (83.94%), Postives = 176/193 (91.19%), Query Frame = 1
Query: 1 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQTELTKIQGFIRGKI 579
FSRSIDCQNLTGK+A+VFGDSTHA A+TKILT+EMGI+V+WAGTYCKYDKSW EKE+ LCDEI+ITDDHNLIGDLIAKVEPAVIFGTQMERHV KRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKE + LS E +KW +E+QTEL+KI GF+RGKI
Sbjct: 289 FSRSIDCQNLTGKRAVVFGDSTHAVAITKILTKEMGIHVIWAGTYCKYDKSWVEKELLGLCDEIIITDDHNLIGDLIAKVEPAVIFGTQMERHVGKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEAIGGSLST---EFDLKWTIEAQTELSKIPGFVRGKI 478
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Match: A0A0K2RWT8_9STRA (Light-independent protochlorophyllide reductase subunit B n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RWT8_9STRA) HSP 1 Score: 327 bits (837), Expect = 9.600e-108 Identity = 151/193 (78.24%), Postives = 172/193 (89.12%), Query Frame = 1
Query: 1 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQTELTKIQGFIRGKI 579
FSRSIDCQNLTGKKA+VFGDSTHA AMTKIL +E+GI VVWAGTYCKYDK+WF ++ LCDE+++TDDHNL+GDLIAK EP IFGTQMERHV KRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQI+DL+YNSFTLGMEDHLLEIFGGHDT+E+++ LS DS+ + W +E+Q ELTKI GF+RGKI
Sbjct: 289 FSRSIDCQNLTGKKAVVFGDSTHAVAMTKILVKELGIKVVWAGTYCKYDKAWFTSQLEGLCDEVILTDDHNLVGDLIAKTEPEAIFGTQMERHVGKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQISDLVYNSFTLGMEDHLLEIFGGHDTREVITQSLSADSDLI---WAIEAQNELTKIPGFVRGKI 478
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Match: A0A1Q8Z720_9CYAN (Light-independent protochlorophyllide reductase subunit B n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A1Q8Z720_9CYAN) HSP 1 Score: 322 bits (826), Expect = 4.390e-106 Identity = 146/193 (75.65%), Postives = 171/193 (88.60%), Query Frame = 1
Query: 1 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQTELTKIQGFIRGKI 579
FSRSIDCQNLTGKKA+VFGDSTH+AAMTKIL+REMGI+VVWAGTYCKYD WF ++VG+ CDE+++TDDH LIGD IA+VEP+ IFGTQMERHV KRL+IPCGVI+APVHIQNFP+ Y+PFLGYEG NQIADL+YNSFTLGMEDHLLEIFGGHDTKE++ G+S DS+ + W E+Q EL KI GF+RGK+
Sbjct: 289 FSRSIDCQNLTGKKAVVFGDSTHSAAMTKILSREMGIHVVWAGTYCKYDADWFREQVGEYCDEVIVTDDHGLIGDAIARVEPSAIFGTQMERHVGKRLDIPCGVIAAPVHIQNFPIGYKPFLGYEGTNQIADLVYNSFTLGMEDHLLEIFGGHDTKEVIHKGISADSD---LSWTKEAQAELNKIPGFVRGKV 478
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Match: A0A0D8ZQY3_9CYAN (Light-independent protochlorophyllide reductase subunit B n=18 Tax=Bacteria TaxID=2 RepID=A0A0D8ZQY3_9CYAN) HSP 1 Score: 322 bits (824), Expect = 8.790e-106 Identity = 145/193 (75.13%), Postives = 171/193 (88.60%), Query Frame = 1
Query: 1 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQTELTKIQGFIRGKI 579
FSRSIDCQNLTGKKA+VFGDSTHAAAMTKIL REMGI+VVWAGTYCKYD WF+++VG+ CDE+++T+DH IGD IA+VEP+ IFGTQMERHV KRLNIPCGVI+APVHIQNFP+ Y+PF GYEG NQIADL+YNSFTLGMEDHLLEIFGGHDTKE+++ G+S DS+ + WN E+Q EL K+ GF+RGK+
Sbjct: 289 FSRSIDCQNLTGKKAVVFGDSTHAAAMTKILAREMGIHVVWAGTYCKYDAEWFKEQVGEYCDEVIVTEDHGQIGDAIARVEPSAIFGTQMERHVGKRLNIPCGVIAAPVHIQNFPIGYKPFCGYEGTNQIADLVYNSFTLGMEDHLLEIFGGHDTKEVITKGISADSD---LGWNKEAQAELNKVPGFVRGKV 478
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Match: A0A3D1PAS8_9CYAN (Ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11049 TaxID=2055787 RepID=A0A3D1PAS8_9CYAN) HSP 1 Score: 312 bits (800), Expect = 3.250e-105 Identity = 140/193 (72.54%), Postives = 167/193 (86.53%), Query Frame = 1
Query: 1 FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKSWFEKEVGDLCDEIVITDDHNLIGDLIAKVEPAVIFGTQMERHVAKRLNIPCGVISAPVHIQNFPLSYRPFLGYEGANQIADLIYNSFTLGMEDHLLEIFGGHDTKEILSAGLSVDSEELKIKWNLESQTELTKIQGFIRGKI 579
FSRSIDCQNLTGKKA+VFGDSTHAAAMTKIL REMGI+VVWAG+YCKYD WF ++V + CDE++ITDDH IGD IA+VEP+ IFGTQMERHV KRL+IPCGVI+AP+HIQNFP+ Y+PFLGYEG NQ+ DL+YNSFTLGMEDHLLEIFGGHDTKE+++ G+S +S+ + W + Q EL KI GF+RGK+
Sbjct: 65 FSRSIDCQNLTGKKAVVFGDSTHAAAMTKILAREMGIHVVWAGSYCKYDADWFREQVSEYCDEVIITDDHGEIGDAIARVEPSAIFGTQMERHVGKRLDIPCGVIAAPIHIQNFPIGYKPFLGYEGTNQVVDLVYNSFTLGMEDHLLEIFGGHDTKEVITKGISAESD---LNWTKDGQAELNKIPGFVRGKV 254 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112899.2679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112899.2679.1 >prot_M-pyrifera_M_contig112899.2679.1 ID=prot_M-pyrifera_M_contig112899.2679.1|Name=mRNA_M-pyrifera_M_contig112899.2679.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp FSRSIDCQNLTGKKAIVFGDSTHAAAMTKILTREMGINVVWAGTYCKYDKback to top mRNA from alignment at M-pyrifera_M_contig112899:2..580- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112899.2679.1 ID=mRNA_M-pyrifera_M_contig112899.2679.1|Name=mRNA_M-pyrifera_M_contig112899.2679.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig112899:2..580- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112899:2..580- >mRNA_M-pyrifera_M_contig112899.2679.1 ID=mRNA_M-pyrifera_M_contig112899.2679.1|Name=mRNA_M-pyrifera_M_contig112899.2679.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig112899:2..580- (Macrocystis pyrifera P11B4 male)back to top |