mRNA_M-pyrifera_M_contig11283.2672.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11283.2672.1
Unique NamemRNA_M-pyrifera_M_contig11283.2672.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11283.2672.1 vs. uniprot
Match: D8LDF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF5_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 1.780e-86
Identity = 127/153 (83.01%), Postives = 141/153 (92.16%), Query Frame = 1 
Query:    1 DGSALPTESGKLGNKDICRGRLSFKGFVGAGKGTVEYQGCGDREGKGRWLTKPKNVVNGRITLSARWKINFSDGTSLLYRGDVVQESE--GTALTVDTSGAAAKGGGALQRPDAHIRGEVLRPITNIQGSLSEKKIGDFEADLIELPSDQDKM 453
            DGSALP E+G+LG K IC GRLSFKGFVGAGKGTVEY+GCGDREGKGRWLTKPKN+VNGRITLSARW +NF+DGT+LLYRGDVVQ++E  GTALTVDTSGAAA GG A +RPDAHIRGEVLRP+ NIQGSL+EKKIG+FEADLIELPSD DK+
Sbjct:  198 DGSALPQEAGRLGRKGICGGRLSFKGFVGAGKGTVEYKGCGDREGKGRWLTKPKNIVNGRITLSARWSVNFTDGTTLLYRGDVVQDAEAQGTALTVDTSGAAAMGGPAFERPDAHIRGEVLRPVKNIQGSLTEKKIGEFEADLIELPSDDDKL 350
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BLAST of mRNA_M-pyrifera_M_contig11283.2672.1 vs. uniprot
Match: A0A835Z999_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z999_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.320e-35
Identity = 71/140 (50.71%), Postives = 91/140 (65.00%), Query Frame = 1 
Query:   43 KDICRGRLSFKGFVGA-GKGTVEYQGC-GDREGKGRWLTKPKNVVNGRITLSARWKINFSDGT-SLLYRGDVVQESEGTALTVDTSGAAAKGGGALQRPDAHIRGEVLRPITNIQGSLSEKKIGDFEADLIELPSDQDKM 453
            + +C+G+L+FKGFV   GKGTVEY    G+REGKG WL KP ++  G+I  SARWK+ +  G  S LYRGDVV +S       +T  AA         PDAHIRGEVL+P     GSL EK IG+FEADL+++  D+DK+
Sbjct:   74 ESLCKGKLTFKGFVDEPGKGTVEYVSSDGEREGKGYWLLKPGSITAGKILFSARWKVTYKGGGGSFLYRGDVVLDS------TETLHAAGN-----PHPDAHIRGEVLKPFKGRTGSLQEKHIGEFEADLLQVDKDEDKL 202
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BLAST of mRNA_M-pyrifera_M_contig11283.2672.1 vs. uniprot
Match: W7TK28_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK28_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.430e-35
Identity = 65/140 (46.43%), Postives = 88/140 (62.86%), Query Frame = 1 
Query:   40 NKDICRGRLSFKGFVGA-GKGTVEYQGCGDREGKGRWLTKPKNVVNGRITLSARWKINFSDGTSLLYRGDVVQESEGTALTVDTSGAAAKGGGALQRPDAHIR-GEVLRPITNIQGSLSEKKIGDFEADLIELPSDQDKM 453
            ++ +C+GR+  +GFV    KGT+EY GC D +GKG WL KP  + NG+I  SARWK+ FSDG SL+YRGDV+                   GG   +  A I  GE+L+P T I G+LSEKK+G FEADLI++  D++K+
Sbjct:  144 DQPLCKGRIKMRGFVEEPNKGTLEYTGCNDGKGKGNWLLKPARIANGQIRFSARWKVRFSDGESLIYRGDVLA------------------GGNYAKASASITDGEILKPFTGITGNLSEKKVGTFEADLIQVSDDEEKL 265
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BLAST of mRNA_M-pyrifera_M_contig11283.2672.1 vs. uniprot
Match: A0A7S2Y0F9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0F9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.210e-29
Identity = 57/136 (41.91%), Postives = 85/136 (62.50%), Query Frame = 1 
Query:   49 ICRGRLSFKGFVGAGKGTVEYQGCGDREGKGRWLTKPKNVVNGRITLSARWKINFSDGTSLLYRGDVVQESEGTALTVDTSGAAAKGGGALQRPDAHIRGEVLRPITNIQGSLSEKKIGD-FEADLIELPSDQDKM 453
            +C+G+L F GFV    GTV+Y+GC DR+G G+WL KP  +  G++  SARWK+ F+DGT+L+Y GD+            TSG         ++PD+ + GE+L P+TN  G +SEK  G  F AD++E+ +D +K+
Sbjct:  149 LCKGQLKFDGFVDQMGGTVKYEGCNDRKGSGKWLLKPIRIQEGKVLYSARWKLKFTDGTTLIYVGDL-----------RTSGYVT------EKPDSTMSGEILIPVTNKAGIMSEKSSGGKFTADILEISTDTEKL 267
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BLAST of mRNA_M-pyrifera_M_contig11283.2672.1 vs. uniprot
Match: A0A6T5NYX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NYX6_HETAK)

HSP 1 Score: 117 bits (294), Expect = 1.940e-29
Identity = 65/141 (46.10%), Postives = 83/141 (58.87%), Query Frame = 1 
Query:   49 ICRGRLSFKGFVGAGKGTVEYQ-----GCGDREGKGRWLTKPKNVVNGRITLSARWKINFSDGTSLLYRGDVVQESEGTALTVDTSGAAAKGGGALQRPDAHIRGEVLRPITNIQGSLSEKKIG-DFEADLIELPSDQDKM 453
            +CRG + F+GF    KGT+EY      GC  R GKG WL KP  V NG+I LSARWKI F+DGT+L+Y+GDV           D +G          RPDA I GE+L P+    GSLSEK  G  F+AD +++ SD +K+
Sbjct:  151 LCRGTVLFRGFEDEPKGTLEYAAAPGGGCEGRAGKGNWLVKPGRVSNGQIILSARWKIKFNDGTTLIYKGDV-----------DVTGRLR------DRPDASIDGEILIPVKTQAGSLSEKNSGLKFQADYLKVGSDSEKL 274
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11283.2672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LDF5_ECTSI1.780e-8683.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z999_9STRA1.320e-3550.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TK28_9STRA2.430e-3546.43Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A7S2Y0F9_9STRA1.210e-2941.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6T5NYX6_HETAK1.940e-2946.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11283contigM-pyrifera_M_contig11283:2433..3888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_000810.1
Exons2
Model size487
Cds size456
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11283.2672.1prot_M-pyrifera_M_contig11283.2672.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11283 2433..3859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.9341328-CDS-M-pyrifera_M_contig11283:2432..26111622815641.9341328-CDS-M-pyrifera_M_contig11283:2432..2611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11283 2433..2611 +
1692277501.1641297-CDS-M-pyrifera_M_contig11283:2432..26111692277501.1641297-CDS-M-pyrifera_M_contig11283:2432..2611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11283 2433..2611 +
1622815641.9474313-CDS-M-pyrifera_M_contig11283:3582..38591622815641.9474313-CDS-M-pyrifera_M_contig11283:3582..3859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11283 3583..3859 +
1692277501.1757977-CDS-M-pyrifera_M_contig11283:3582..38591692277501.1757977-CDS-M-pyrifera_M_contig11283:3582..3859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11283 3583..3859 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.96389-UTR-M-pyrifera_M_contig11283:3859..38881622815641.96389-UTR-M-pyrifera_M_contig11283:3859..3888Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11283 3860..3888 +
1692277501.1923673-UTR-M-pyrifera_M_contig11283:3859..38881692277501.1923673-UTR-M-pyrifera_M_contig11283:3859..3888Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11283 3860..3888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11283.2672.1

>prot_M-pyrifera_M_contig11283.2672.1 ID=prot_M-pyrifera_M_contig11283.2672.1|Name=mRNA_M-pyrifera_M_contig11283.2672.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
DGSALPTESGKLGNKDICRGRLSFKGFVGAGKGTVEYQGCGDREGKGRWL
TKPKNVVNGRITLSARWKINFSDGTSLLYRGDVVQESEGTALTVDTSGAA
AKGGGALQRPDAHIRGEVLRPITNIQGSLSEKKIGDFEADLIELPSDQDK
M*
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mRNA from alignment at M-pyrifera_M_contig11283:2433..3888+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11283.2672.1 ID=mRNA_M-pyrifera_M_contig11283.2672.1|Name=mRNA_M-pyrifera_M_contig11283.2672.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1456bp|location=Sequence derived from alignment at M-pyrifera_M_contig11283:2433..3888+ (Macrocystis pyrifera P11B4 male)
GACGGCAGTGCGCTGCCGACGGAATCTGGAAAATTGGGCAACAAAGATAT
ATGCAGGGGGCGGCTATCGTTCAAGGGTTTCGTAGGGGCCGGGAAGGGGA
CAGTGGAGTACCAGGGCTGCGGAGACAGGGAAGGGAAAGGCAGGTGGTTA
ACGAAGCCCAAGAACGTCGTCAATGGGAGGTTAGTGTGGATGTGTTGTGT
TACGAAGTGTCAAGATTTTAACCGGAAGGTCGAGATCGAATAACGATGTA
CCAGGTGCATACATTTGTGGCGGAAAGTCGAAATCGAATAAATAGTACCG
GGTACCAGGCTCATGTATATGCAAAGAAAATTCGAAAATCGAATAAAGTA
CACCAGGTGTGCAGACATGCGAAGAAAATTAAACCTTACCGTTAATCATA
ACACCCCGCAAACTAATCCCGAGCTTGTTACCGTATTCATGCGGAGTTGG
GTAGGGTGGGTGAATTATCTTTAGCTGTCAATGGCGTGAATGAATGAATT
ATCCTTTTTTTGGAGACGTTGTGAGAGGTAGGATACGTGACCATTTGTGT
GAAGCGCATTGGTCTGGCGGTTTTGTTGCTTATTCCGACTGCTATCATGT
CCTCGAGCCGGATGGCACCGTTGTACCCCGCTGACGGGATCGATCTGGGA
GGGAAGGAAAGCGTTCGTACGAGCGATGCACGCCGCCCGCATCGCTCTCA
TTTCTCGGGTAGAGGGTTACACCGGAACAGCGCCACGGGCCGCCTGGATT
TTTTTTTGAGAGTGACTTCACCTCTTCTATGGGGGTGTGCTGTGGTTTTG
GCGAACGGTAACACCATGGAGCCATCCATGTGGAGGACGTTTCGGCTGTT
GCGGTGACGAGACAAGAAAACCGCCACCCTTGGGTTGTGCTTCACCCGGC
GGTGCTTTCCACTCGGCCTAGCTTCGGCCAATTTGTTGATAGCCCACCCT
AACTACTCAATTCATCTTCATTCCGGGAAAAATATAAAGCGGTCGTCGGG
GTCAGATTTGCTGCAGGGTTGAGGTTAGAGTTTGAAGGCAAGCACATTTC
AACCGGCACGTCGGAACTGGGCTGAGACCTGTACTGTACCTGAGTTGTAC
TTTACCGCCAACGTCGTGCTTCTGTTTCCCGTTGTTGTGGTTTTGATCAG
GATCACGCTTTCGGCGCGCTGGAAGATTAATTTCTCGGACGGAACCTCGT
TGCTCTACCGCGGCGATGTCGTCCAAGAATCCGAGGGGACAGCTCTGACC
GTAGACACTAGCGGGGCGGCGGCCAAAGGAGGCGGGGCGCTCCAAAGACC
AGACGCACACATTCGAGGAGAGGTCTTGCGCCCGATCACGAACATACAGG
GGAGTTTGTCGGAGAAGAAGATCGGTGATTTTGAGGCGGATCTCATAGAG
CTGCCGAGCGACCAGGACAAGATGTGATGGGAGAAGCGTGTTTTACTTTT
GAGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11283:2433..3888+

>mRNA_M-pyrifera_M_contig11283.2672.1 ID=mRNA_M-pyrifera_M_contig11283.2672.1|Name=mRNA_M-pyrifera_M_contig11283.2672.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig11283:2433..3888+ (Macrocystis pyrifera P11B4 male)
GACGGCAGTGCGCTGCCGACGGAATCTGGAAAATTGGGCAACAAAGATAT
ATGCAGGGGGCGGCTATCGTTCAAGGGTTTCGTAGGGGCCGGGAAGGGGA
CAGTGGAGTACCAGGGCTGCGGAGACAGGGAAGGGAAAGGCAGGTGGTTA
ACGAAGCCCAAGAACGTCGTCAATGGGAGGACGGCAGTGCGCTGCCGACG
GAATCTGGAAAATTGGGCAACAAAGATATATGCAGGGGGCGGCTATCGTT
CAAGGGTTTCGTAGGGGCCGGGAAGGGGACAGTGGAGTACCAGGGCTGCG
GAGACAGGGAAGGGAAAGGCAGGTGGTTAACGAAGCCCAAGAACGTCGTC
AATGGGAGGATCACGCTTTCGGCGCGCTGGAAGATTAATTTCTCGGACGG
AACCTCGTTGCTCTACCGCGGCGATGTCGTCCAAGAATCCGAGGGGACAG
CTCTGACCGTAGACACTAGCGGGGCGGCGGCCAAAGGAGGCGGGGCGCTC
CAAAGACCAGACGCACACATTCGAGGAGAGGTCTTGCGCCCGATCACGAA
CATACAGGGGAGTTTGTCGGAGAAGAAGATCGGTGATTTTGAGGCGGATC
TCATAGAGCTGCCGAGCGACCAGGACAAGATGTGAGATCACGCTTTCGGC
GCGCTGGAAGATTAATTTCTCGGACGGAACCTCGTTGCTCTACCGCGGCG
ATGTCGTCCAAGAATCCGAGGGGACAGCTCTGACCGTAGACACTAGCGGG
GCGGCGGCCAAAGGAGGCGGGGCGCTCCAAAGACCAGACGCACACATTCG
AGGAGAGGTCTTGCGCCCGATCACGAACATACAGGGGAGTTTGTCGGAGA
AGAAGATCGGTGATTTTGAGGCGGATCTCATAGAGCTGCCGAGCGACCAG
GACAAGATGTGA
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