mRNA_M-pyrifera_M_contig112804.2671.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112804.2671.1
Unique NamemRNA_M-pyrifera_M_contig112804.2671.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112804.2671.1 vs. uniprot
Match: A0A3M2H4L8_ACTSX (Uncharacterized protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H4L8_ACTSX)

HSP 1 Score: 51.2 bits (121), Expect = 6.780e-5
Identity = 42/126 (33.33%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:    4 DGSGLSIQSKARCESLAGVLD-PGVSPLAVGALPTAAASG-LAACA---PSGLDSLHVTASTRAETSSMAGQAVAANGDVISFAVIANWQPAGGEASEDICSGLMPAVLDAIAQHPAGPSIDDLIP 366
            DGSGLS  ++  C  +  +L   G   +    L     SG LA C    PS    +     T  + +++AG  VA NGDV++FA+IAN +  G       C+ L   ++  +A HP GP +D L P
Sbjct:  365 DGSGLSSLNRITCRLVEEILRRSGPDSVIADGLAVVGESGTLARCLVDDPSARGDVEAKTGTLNDVTALAGLTVADNGDVVTFAMIANGEGVGARLGS--CNELQTTLIRGVANHPYGPDVDALSP 488
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112804.2671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3M2H4L8_ACTSX6.780e-533.33Uncharacterized protein n=1 Tax=Actinomyces sp. Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112804contigM-pyrifera_M_contig112804:72..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.8870022-CDS-M-pyrifera_M_contig112804:71..4551622815641.8870022-CDS-M-pyrifera_M_contig112804:71..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112804 72..455 -
1692277501.1540902-CDS-M-pyrifera_M_contig112804:71..4551692277501.1540902-CDS-M-pyrifera_M_contig112804:71..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112804 72..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112804.2671.1prot_M-pyrifera_M_contig112804.2671.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112804 72..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112804.2671.1

>prot_M-pyrifera_M_contig112804.2671.1 ID=prot_M-pyrifera_M_contig112804.2671.1|Name=mRNA_M-pyrifera_M_contig112804.2671.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
LDGSGLSIQSKARCESLAGVLDPGVSPLAVGALPTAAASGLAACAPSGLD
SLHVTASTRAETSSMAGQAVAANGDVISFAVIANWQPAGGEASEDICSGL
MPAVLDAIAQHPAGPSIDDLIPPDSVS*
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mRNA from alignment at M-pyrifera_M_contig112804:72..455-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112804.2671.1 ID=mRNA_M-pyrifera_M_contig112804.2671.1|Name=mRNA_M-pyrifera_M_contig112804.2671.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig112804:72..455- (Macrocystis pyrifera P11B4 male)
CTCGACGGTTCGGGCCTCTCGATCCAGAGCAAGGCCCGCTGCGAGAGTCT
GGCCGGCGTCCTCGACCCCGGTGTTTCGCCCCTCGCGGTCGGTGCGCTCC
CGACAGCGGCCGCCTCGGGCCTTGCCGCCTGCGCCCCCTCCGGTCTGGAC
TCACTGCACGTCACCGCCTCAACTCGAGCGGAGACCAGCTCGATGGCCGG
CCAGGCCGTCGCCGCCAACGGCGACGTGATCTCGTTCGCCGTGATCGCCA
ACTGGCAACCGGCCGGCGGCGAAGCGTCAGAGGACATCTGTTCGGGACTC
ATGCCCGCGGTGCTCGACGCCATCGCCCAGCACCCGGCGGGACCCTCGAT
CGACGATCTGATCCCGCCCGACTCGGTCAGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112804:72..455-

>mRNA_M-pyrifera_M_contig112804.2671.1 ID=mRNA_M-pyrifera_M_contig112804.2671.1|Name=mRNA_M-pyrifera_M_contig112804.2671.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig112804:72..455- (Macrocystis pyrifera P11B4 male)
CTCGACGGTTCGGGCCTCTCGATCCAGAGCAAGGCCCGCTGCGAGAGTCT
GGCCGGCGTCCTCGACCCCGGTGTTTCGCCCCTCGCGGTCGGTGCGCTCC
CGACAGCGGCCGCCTCGGGCCTTGCCGCCTGCGCCCCCTCCGGTCTGGAC
TCACTGCACGTCACCGCCTCAACTCGAGCGGAGACCAGCTCGATGGCCGG
CCAGGCCGTCGCCGCCAACGGCGACGTGATCTCGTTCGCCGTGATCGCCA
ACTGGCAACCGGCCGGCGGCGAAGCGTCAGAGGACATCTGTTCGGGACTC
ATGCCCGCGGTGCTCGACGCCATCGCCCAGCACCCGGCGGGACCCTCGAT
CGACGATCTGATCCCGCCCGACTCGGTCAGCTGACTCGACGGTTCGGGCC
TCTCGATCCAGAGCAAGGCCCGCTGCGAGAGTCTGGCCGGCGTCCTCGAC
CCCGGTGTTTCGCCCCTCGCGGTCGGTGCGCTCCCGACAGCGGCCGCCTC
GGGCCTTGCCGCCTGCGCCCCCTCCGGTCTGGACTCACTGCACGTCACCG
CCTCAACTCGAGCGGAGACCAGCTCGATGGCCGGCCAGGCCGTCGCCGCC
AACGGCGACGTGATCTCGTTCGCCGTGATCGCCAACTGGCAACCGGCCGG
CGGCGAAGCGTCAGAGGACATCTGTTCGGGACTCATGCCCGCGGTGCTCG
ACGCCATCGCCCAGCACCCGGCGGGACCCTCGATCGACGATCTGATCCCG
CCCGACTCGGTCAGCTGA
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