mRNA_M-pyrifera_M_contig112789.2666.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112789.2666.1
Unique NamemRNA_M-pyrifera_M_contig112789.2666.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Match: A0A6P0V559_9CYAN (DUF2063 domain-containing protein n=3 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0V559_9CYAN)

HSP 1 Score: 93.2 bits (230), Expect = 4.610e-20
Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 1
Query:    1 FPSFIAEFKPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAEKVDSLQFLLVAPLFLCRSDYPLIELWHLGRLEAESAPTLDINQGGGCYVVYRDGLNVLIENLAEPLFDLLDELNKPQDFGTICDKWLSKHPGLELEAFSSELMQRSWIAGF 483
            FP F+A+F+P+A+LPY  D+A LEW WH  F  + T  +  + LA+VP E+   L F L     L  S YP+  +W + + + +   T+ + +GG    ++R G ++ I+  + P ++LL        F  +C++      G ++ +     +QR WI  F
Sbjct:   97 FPDFLADFEPVANLPYLPDVARLEWFWHRVFIGEDTTGLDLQRLAEVPQERWGELIFYLPKNSVLLESAYPIHRIWQVNQADYQGDLTVSLAEGGVKIFLWRKGYDMHIDLPSAPEWELLKAFQSNHPFEEVCEQLAE---GTDVSSLLPLFVQRGWIDDF 254          
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Match: A0A6M0G9A3_9CYAN (DUF2063 domain-containing protein n=1 Tax=Symploca sp. SIO2E6 TaxID=2607809 RepID=A0A6M0G9A3_9CYAN)

HSP 1 Score: 85.1 bits (209), Expect = 5.300e-17
Identity = 44/160 (27.50%), Postives = 83/160 (51.88%), Query Frame = 1
Query:    4 PSFIAEFKPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAEKVDSLQFLLVAPLFLCRSDYPLIELWHLGRLEAESAPTLDINQGGGCYVVYRDGLNVLIENLAEPLFDLLDELNKPQDFGTICDKWLSKHPGLELEAFSSELMQRSWIAGF 483
            P F+A+F+P+A+LPY  D+A LEW WH  F  + T  +  + LA VP E+   L F L    F+  S YP+  +W + + + +   T+ +++GG    ++R   ++ ++      ++LL           IC++   +   +++ ++    +QR WI+ F
Sbjct:   98 PDFLADFEPVANLPYLPDVARLEWFWHRVFIGEDTTSLDVQKLAAVPQERWGELIFHLPKNSFMLESAYPIHRIWQVNQADYQGELTVSLDEGGSNIFLWRQDYDMRLDLPGTLEWELLKAFQGNYPLEAICEQLADE---VDVGSWLPVFVQRGWISDF 254          
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Match: A0A3C0BU01_9HYPH (DUF2063 domain-containing protein n=2 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3C0BU01_9HYPH)

HSP 1 Score: 80.1 bits (196), Expect = 4.020e-15
Identity = 51/160 (31.87%), Postives = 78/160 (48.75%), Query Frame = 1
Query:    1 FPSFIAEFKPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAEKVDSLQFLLVAPLFLCRSDYPLIELWHLGRLEAESAPTLDINQGGGCYVVYRDGLNVLIENLAEPLFDLLDELNKPQDFGTICDKWLSKHPGLELEAFSSELMQRSWIAG 480
            FP F+A F P A + Y AD+AALEW+WH A+HA    P++   LA+  AE+ +     L   L    S +P++ ++ L   E +  PT  + +GG   +V R  L+V +  L       +  L   +  G      L + PG  LEA  + L++   I G
Sbjct:   94 FPEFVAGFGPAASVTYLADVAALEWAWHAAYHAPDVTPLSLPELARA-AERAEDAVLRLHPSLAGVPSPHPVVSIFELNAQEGDVPPTR-LERGGEDALVVRPYLDVEVRRLPPGATPFVLALKSGESIGGATATALGEAPGFNLEANLAGLIESGAIVG 251          
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Match: A0A353YHB3_9HYPH (DUF2063 domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A353YHB3_9HYPH)

HSP 1 Score: 79.0 bits (193), Expect = 4.710e-14
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 1
Query:    1 FPSFIAEFKPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAEKVDSLQFLLVAPLFLCRSDYPLIELWHLGRLEAESAPTLDINQGGGCYVVYRDGLNVLIENLAEPLFDLLDELNKPQDFGTICDKWLSKHPGLELEAFSSELMQRSWIAG 480
            FP F+A F P A + Y AD+AALEW+WH A+HA    P++   LA+  AE+ +     L   L    S +P++ ++ L   E +  PT  +  GG   +V R  L+V +  L       +  L   +  G      L + PG  LEA  + L++   I G
Sbjct:  347 FPEFVAGFGPAASVTYLADVAALEWAWHAAYHAPDVTPLSLPELARA-AERAEDAVLRLHPSLAGVPSPHPVVSIFELNAQEGDVPPTR-LEWGGEDALVVRPYLDVEVRRLPPGATPFVLALKSGESIGGATATALGEAPGFNLEANLAGLIESGAIVG 504          
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Match: UPI00199E2B1D (Putative DNA-binding domain-containing protein n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI00199E2B1D)

HSP 1 Score: 76.6 bits (187), Expect = 7.920e-14
Identity = 51/162 (31.48%), Postives = 76/162 (46.91%), Query Frame = 1
Query:    1 FPSFIAEFKPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAEKVDSLQFLLVAPLFLCRSDYPLIELWHLGRLEAESAPTLDINQGGGCYVVYRDGLNVLIENLAEPLFDLLDELNKPQDFGTICDKWLSKHPGLELEAFSSELMQRSWIAGFR 486
            FP+FIAEF P A +PY AD+AALEW+WH A+HA    P++ + LA        ++  +L   L + RS YP++ ++ L        PT     G    +V R  L V +  L E     +  L   +  G      L + PG +L+   + L+    I   R
Sbjct:   94 FPTFIAEFAPGASVPYLADMAALEWAWHSAYHAADAAPLSLQELASAVDHAAGAV-LILHPSLGIVRSPYPIVSIYELNAQSGAVPPTQVA--GAEDTMVARPRLEVEMRRLPEGGAPFILALKAGRTIGEASAGALQEAPGFDLQTNLTGLIGSGAIVALR 252          
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Match: A0A7K4DZR0_9EURY (DUF2063 domain-containing protein n=1 Tax=Halobacteria archaeon TaxID=2670410 RepID=A0A7K4DZR0_9EURY)

HSP 1 Score: 74.3 bits (181), Expect = 5.570e-13
Identity = 42/157 (26.75%), Postives = 74/157 (47.13%), Query Frame = 1
Query:   10 FIAEFKPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAEKVDSLQFLLVAPLFLCRSDYPLIELWHLGRLEAESAPTLDINQGGGCYVVYRDGLNVLIENLAEPLFDLLDELNKPQDFGTICDKWLSKHPGLELEAFSSELMQRSWIAG 480
            FI  F+  + +PY AD+A LEW+WHCA +A     +++  L +V  E    +Q  L     L RS YP++ +W + + + E    + +++G    +V+R G  + IE L E     + +L +           L   P   L    +  +++ W +G
Sbjct:   94 FIESFEAASSVPYLADVARLEWAWHCAVNAPDEPVLSARELNQVTGEDYARIQLQLQGSATLLRSPYPILHIWQVHQDDYEGEIEISLDEGRIDLLVWRCGQELHIEPLNEVQCLFIQQLQQQAPLEQAFITLLQHAPQTNLAGLLTASLEQGWYSG 250          
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Match: A0A5J6MZ36_9PROT (DUF2063 domain-containing protein n=1 Tax=Hypericibacter adhaerens TaxID=2602016 RepID=A0A5J6MZ36_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 5.790e-13
Identity = 45/149 (30.20%), Postives = 76/149 (51.01%), Query Frame = 1
Query:    1 FPSFIAEFKPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAEKVDSLQFLLVAPLFLCRSDYPLIELWHLGR--LEAESAPTLDINQGGGCYVVYRDGLNVLIENLAEPLFDLLDELNKPQDFGTICDKWLSKHPGLELEA 441
            FP+F+A+++P A L Y  D+  LEW+ + A HA     +    LA+  AE +  L+  L     L RS +P+  +W   R   +A++   +D+ +GGG  +VYR G ++ + ++ E  F LL   ++           L+  P L+L A
Sbjct:   97 FPAFLADYRPAASLVYLPDVGRLEWAINMALHAADLPALAPADLAQA-AEAMTPLR--LHPACHLLRSPWPIERIWRANRPGADADADIAIDLEEGGGPLLVYRQGFDLALASITEGEFALLSRFHEGASLEAAAGGALAADPALDLAA 242          
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Match: A0A7X3WLF2_9PROT (DUF2063 domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7X3WLF2_9PROT)

HSP 1 Score: 67.4 bits (163), Expect = 2.290e-10
Identity = 47/168 (27.98%), Postives = 79/168 (47.02%), Query Frame = 1
Query:    1 FPSFIAEF----KPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAEKVDSLQFLLVAPLFLCRSDYPLIELW--HLGRLEAESAPTLDINQGGGCYVVYRDGLNVLIENLAEPLFDLLDELNKPQDFGTICDKWLSKHPGLELEAFSSELMQRSWIAGFR 486
            FP F+ EF      LA+ PY ADLA LEW +  A++ +        +LA +  +    L F+L A +   +SDYP+ ELW  H G+   +    +D  Q      V R+     I  +      +++++++   FG +      +   + L+A   EL+ R WI G++
Sbjct:   96 FPDFMREFIEHHAELAEYPYLADLARLEWLYEQAYYTREDAAFDFRALAMLDEDDYRKLHFVLGASVATLKSDYPVYELWRAHQGQGGTKEVTAIDEPQ---YLCVAREEFKPRIHRIDHAFQWVMNKIDQGCAFGELETLVEQESMRISLQAIIPELIARKWICGYQ 260          
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Match: A0A6M8FB62_9PSED (Putative DNA-binding domain-containing protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A6M8FB62_9PSED)

HSP 1 Score: 65.5 bits (158), Expect = 9.350e-10
Identity = 41/126 (32.54%), Postives = 61/126 (48.41%), Query Frame = 1
Query:   10 FIAEFKPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAEKVDSLQFLLVAPLFLCRSDYPLIELWHLGRLEAESAPTLDINQGGGCYVVYRDGLNVLIENLAEPLFDLLDELNKPQDF 387
            FI +F PLAD P+ AD+A LEW+   AFHA    P+  + L +    ++  L+      + L RS YPL  LW    L     P       G   +V+R GL ++   + +   DLL++L   + F
Sbjct:   95 FIEQFPPLADWPFLADVARLEWARLHAFHAADALPLQLDGLGEEALHRLLDLRLQWHPSVTLLRSTYPLWSLWFAAELPHADWP-------GENVLVWRQGLQLMTRKVDDSSADLLEQLRHRRSF 213          
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Match: A0A5R8YDS8_9HYPH (DUF2063 domain-containing protein n=3 Tax=Cohaesibacter TaxID=655352 RepID=A0A5R8YDS8_9HYPH)

HSP 1 Score: 65.9 bits (159), Expect = 1.020e-9
Identity = 35/114 (30.70%), Postives = 54/114 (47.37%), Query Frame = 1
Query:    1 FPSFIAEFKPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAEKVDSLQFLLVAPLFLCRSDYPLIELWHLGRLEAESAPTLDINQGGGCYVVYRDGLNVLIENLAE 342
            F  F+A F P+A+LPY AD+A LE +W  A+HA    P     L  +P E++ +L F       L RSD+P+  +W       ++     + Q     +V R    V +  L +
Sbjct:  132 FAEFLANFPPVAELPYLADVARLERAWLDAYHAADAAPFDPSMLQSIPPERLGALTFAFHPGAHLLRSDHPVFSIWSAHSEHGDTVDLGTVEQAAQSVLVTRPHWQVSVTMLPD 245          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112789.2666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0V559_9CYAN4.610e-2030.43DUF2063 domain-containing protein n=3 Tax=unclassi... [more]
A0A6M0G9A3_9CYAN5.300e-1727.50DUF2063 domain-containing protein n=1 Tax=Symploca... [more]
A0A3C0BU01_9HYPH4.020e-1531.88DUF2063 domain-containing protein n=2 Tax=Hyphomic... [more]
A0A353YHB3_9HYPH4.710e-1431.88DUF2063 domain-containing protein n=1 Tax=Hyphomic... [more]
UPI00199E2B1D7.920e-1431.48Putative DNA-binding domain-containing protein n=1... [more]
A0A7K4DZR0_9EURY5.570e-1326.75DUF2063 domain-containing protein n=1 Tax=Halobact... [more]
A0A5J6MZ36_9PROT5.790e-1330.20DUF2063 domain-containing protein n=1 Tax=Hyperici... [more]
A0A7X3WLF2_9PROT2.290e-1027.98DUF2063 domain-containing protein n=1 Tax=Proteoba... [more]
A0A6M8FB62_9PSED9.350e-1032.54Putative DNA-binding domain-containing protein n=2... [more]
A0A5R8YDS8_9HYPH1.020e-930.70DUF2063 domain-containing protein n=3 Tax=Cohaesib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112789contigM-pyrifera_M_contig112789:81..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score95.1
Seed ortholog evalue3.2e-17
Seed eggNOG ortholog329726.AM1_3025
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Putative DNA-binding domain
EggNOG OGs1GD42@1117,COG3219@1,COG3219@2
COG Functional cat.S
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.6936834-CDS-M-pyrifera_M_contig112789:80..5811622815641.6936834-CDS-M-pyrifera_M_contig112789:80..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112789 81..581 -
1692277501.084114-CDS-M-pyrifera_M_contig112789:80..5811692277501.084114-CDS-M-pyrifera_M_contig112789:80..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112789 81..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112789.2666.1prot_M-pyrifera_M_contig112789.2666.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112789 81..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112789.2666.1

>prot_M-pyrifera_M_contig112789.2666.1 ID=prot_M-pyrifera_M_contig112789.2666.1|Name=mRNA_M-pyrifera_M_contig112789.2666.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
FPSFIAEFKPLADLPYTADLAALEWSWHCAFHAQATEPITSESLAKVPAE
KVDSLQFLLVAPLFLCRSDYPLIELWHLGRLEAESAPTLDINQGGGCYVV
YRDGLNVLIENLAEPLFDLLDELNKPQDFGTICDKWLSKHPGLELEAFSS
ELMQRSWIAGFRSNKA*
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mRNA from alignment at M-pyrifera_M_contig112789:81..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112789.2666.1 ID=mRNA_M-pyrifera_M_contig112789.2666.1|Name=mRNA_M-pyrifera_M_contig112789.2666.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig112789:81..581- (Macrocystis pyrifera P11B4 male)
TTTCCTTCGTTTATTGCTGAGTTTAAACCTTTGGCGGATCTTCCTTATAC GGCGGATCTCGCAGCATTGGAATGGTCTTGGCACTGTGCGTTTCATGCAC AAGCGACGGAACCAATCACGTCGGAGTCATTAGCTAAAGTCCCTGCGGAA AAAGTAGATAGCTTGCAGTTTTTGTTAGTAGCCCCTTTGTTTTTGTGTCG CTCCGACTATCCATTAATTGAGCTTTGGCATTTGGGGAGATTGGAGGCTG AAAGTGCTCCAACGCTCGATATTAATCAGGGGGGCGGTTGCTATGTGGTG TATCGAGATGGCTTAAATGTGCTGATTGAGAATCTTGCCGAGCCTTTGTT TGATTTGTTAGATGAACTAAATAAACCGCAGGATTTCGGAACAATATGCG ATAAGTGGTTGTCCAAGCATCCAGGCCTAGAACTTGAGGCCTTTTCCTCG GAGTTGATGCAGCGGTCTTGGATTGCAGGGTTTCGTTCTAACAAGGCATA A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112789:81..581-

>mRNA_M-pyrifera_M_contig112789.2666.1 ID=mRNA_M-pyrifera_M_contig112789.2666.1|Name=mRNA_M-pyrifera_M_contig112789.2666.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig112789:81..581- (Macrocystis pyrifera P11B4 male)
TTTCCTTCGTTTATTGCTGAGTTTAAACCTTTGGCGGATCTTCCTTATAC
GGCGGATCTCGCAGCATTGGAATGGTCTTGGCACTGTGCGTTTCATGCAC
AAGCGACGGAACCAATCACGTCGGAGTCATTAGCTAAAGTCCCTGCGGAA
AAAGTAGATAGCTTGCAGTTTTTGTTAGTAGCCCCTTTGTTTTTGTGTCG
CTCCGACTATCCATTAATTGAGCTTTGGCATTTGGGGAGATTGGAGGCTG
AAAGTGCTCCAACGCTCGATATTAATCAGGGGGGCGGTTGCTATGTGGTG
TATCGAGATGGCTTAAATGTGCTGATTGAGAATCTTGCCGAGCCTTTGTT
TGATTTGTTAGATGAACTAAATAAACCGCAGGATTTCGGAACAATATGCG
ATAAGTGGTTGTCCAAGCATCCAGGCCTAGAACTTGAGGCCTTTTCCTCG
GAGTTGATGCAGCGGTCTTGGATTGCAGGGTTTCGTTCTAACAAGGCATA
ATTTCCTTCGTTTATTGCTGAGTTTAAACCTTTGGCGGATCTTCCTTATA
CGGCGGATCTCGCAGCATTGGAATGGTCTTGGCACTGTGCGTTTCATGCA
CAAGCGACGGAACCAATCACGTCGGAGTCATTAGCTAAAGTCCCTGCGGA
AAAAGTAGATAGCTTGCAGTTTTTGTTAGTAGCCCCTTTGTTTTTGTGTC
GCTCCGACTATCCATTAATTGAGCTTTGGCATTTGGGGAGATTGGAGGCT
GAAAGTGCTCCAACGCTCGATATTAATCAGGGGGGCGGTTGCTATGTGGT
GTATCGAGATGGCTTAAATGTGCTGATTGAGAATCTTGCCGAGCCTTTGT
TTGATTTGTTAGATGAACTAAATAAACCGCAGGATTTCGGAACAATATGC
GATAAGTGGTTGTCCAAGCATCCAGGCCTAGAACTTGAGGCCTTTTCCTC
GGAGTTGATGCAGCGGTCTTGGATTGCAGGGTTTCGTTCTAACAAGGCAT
AA
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