mRNA_M-pyrifera_M_contig112775.2659.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112775.2659.1
Unique NamemRNA_M-pyrifera_M_contig112775.2659.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112775.2659.1 vs. uniprot
Match: A0A7S2WUX8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUX8_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.870e-5
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   22 SLEALPRRELQALAKEHGVRANQKSISIITAL 117
            +LEALPRRELQ+LAK HG++ANQKS++II  L
Sbjct:   24 NLEALPRRELQSLAKAHGIKANQKSVAIIEEL 55
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112775.2659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2WUX8_9STRA8.870e-571.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112775contigM-pyrifera_M_contig112775:164..484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-17_001610.1
Exons1
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.4094057-CDS-M-pyrifera_M_contig112775:163..4841622815641.4094057-CDS-M-pyrifera_M_contig112775:163..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112775 164..484 +
1692277500.952885-CDS-M-pyrifera_M_contig112775:163..4841692277500.952885-CDS-M-pyrifera_M_contig112775:163..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112775 164..484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112775.2659.1prot_M-pyrifera_M_contig112775.2659.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112775 164..484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112775.2659.1

>prot_M-pyrifera_M_contig112775.2659.1 ID=prot_M-pyrifera_M_contig112775.2659.1|Name=mRNA_M-pyrifera_M_contig112775.2659.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MPHFTAASLEALPRRELQALAKEHGVRANQKSISIITALLSLSTPSPPPP
PAPSPIHEVEVAEEEEAEGEGEGEEEEERGTTVGSVEEVEPAAPASPTPP
LPPLPVA
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mRNA from alignment at M-pyrifera_M_contig112775:164..484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112775.2659.1 ID=mRNA_M-pyrifera_M_contig112775.2659.1|Name=mRNA_M-pyrifera_M_contig112775.2659.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig112775:164..484+ (Macrocystis pyrifera P11B4 male)
ATGCCCCATTTCACTGCTGCGTCGCTGGAGGCTCTCCCGCGTCGGGAGCT
GCAGGCATTGGCGAAAGAGCACGGTGTTCGTGCGAACCAAAAGTCGATTT
CCATCATCACCGCCCTCCTCTCCCTCTCCACCCCCTCACCCCCTCCTCCC
CCCGCTCCCTCGCCTATACACGAGGTGGAAGTGGCGGAAGAGGAGGAAGC
GGAAGGAGAAGGGGAGGGGGAGGAGGAGGAGGAGAGGGGGACAACGGTTG
GGAGTGTGGAAGAGGTGGAACCTGCCGCCCCTGCCTCCCCAACACCTCCC
CTTCCACCCCTCCCTGTAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112775:164..484+

>mRNA_M-pyrifera_M_contig112775.2659.1 ID=mRNA_M-pyrifera_M_contig112775.2659.1|Name=mRNA_M-pyrifera_M_contig112775.2659.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig112775:164..484+ (Macrocystis pyrifera P11B4 male)
ATGCCCCATTTCACTGCTGCGTCGCTGGAGGCTCTCCCGCGTCGGGAGCT
GCAGGCATTGGCGAAAGAGCACGGTGTTCGTGCGAACCAAAAGTCGATTT
CCATCATCACCGCCCTCCTCTCCCTCTCCACCCCCTCACCCCCTCCTCCC
CCCGCTCCCTCGCCTATACACGAGGTGGAAGTGGCGGAAGAGGAGGAAGC
GGAAGGAGAAGGGGAGGGGGAGGAGGAGGAGGAGAGGGGGACAACGGTTG
GGAGTGTGGAAGAGGTGGAACCTGCCGCCCCTGCCTCCCCAACACCTCCC
CTTCCACCCCTCCCTGTAGCAATGCCCCATTTCACTGCTGCGTCGCTGGA
GGCTCTCCCGCGTCGGGAGCTGCAGGCATTGGCGAAAGAGCACGGTGTTC
GTGCGAACCAAAAGTCGATTTCCATCATCACCGCCCTCCTCTCCCTCTCC
ACCCCCTCACCCCCTCCTCCCCCCGCTCCCTCGCCTATACACGAGGTGGA
AGTGGCGGAAGAGGAGGAAGCGGAAGGAGAAGGGGAGGGGGAGGAGGAGG
AGGAGAGGGGGACAACGGTTGGGAGTGTGGAAGAGGTGGAACCTGCCGCC
CCTGCCTCCCCAACACCTCCCCTTCCACCCCTCCCTGTAGCA
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