mRNA_M-pyrifera_M_contig112767.2657.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112767.2657.1
Unique NamemRNA_M-pyrifera_M_contig112767.2657.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A383D6Y0_9ZZZZ (RF_PROK_I domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383D6Y0_9ZZZZ)

HSP 1 Score: 105 bits (263), Expect = 5.540e-28
Identity = 48/85 (56.47%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   19 IRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
            +++PR+EL +SFSRSSGPGGQNVN+VAT+ E+RF LE A W  +   TR RLA    R + ++G+F++VS +FRSQGRN+ED I+
Sbjct:    1 MKIPREELEISFSRSSGPGGQNVNKVATRVEVRFHLESAAW--IAPATRVRLAALHPRRLNREGEFIMVSSRFRSQGRNIEDCIE 83          
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A356F8U2_9BACT (Aminoacyl-tRNA hydrolase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356F8U2_9BACT)

HSP 1 Score: 105 bits (262), Expect = 2.920e-27
Identity = 48/85 (56.47%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   19 IRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
            +++PR+EL +SFSRSSGPGGQNVN+VAT+ ++RF LE A W  +   TR RLA    R + ++G+F+VVS +FRSQGRN+ED I+
Sbjct:    5 MKIPREELEISFSRSSGPGGQNVNKVATRVDVRFHLESAAW--IAPATRVRLAVLHPRRLNREGEFIVVSSRFRSQGRNIEDCIE 87          
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A2D8MZ11_9BACT (Aminoacyl-tRNA hydrolase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D8MZ11_9BACT)

HSP 1 Score: 103 bits (256), Expect = 2.130e-26
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1
Query:   19 IRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
            + VPR+ L +SFSRSSGPGGQNVN+VAT+ E+RF+LE ADW+  +   R RLA    R + ++GDF++VS +FRSQ RN+ED I+
Sbjct:    1 MEVPRERLQVSFSRSSGPGGQNVNKVATRVEVRFQLESADWIPPL--IRSRLASLHXRRLNREGDFIIVSSRFRSQKRNLEDCIE 83          
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A1X7UWY6_AMPQE (RF_PROK_I domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UWY6_AMPQE)

HSP 1 Score: 96.7 bits (239), Expect = 3.260e-23
Identity = 44/83 (53.01%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   25 VPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
            VPRD+L + FSRSSGPGGQNVN+++TKAE+RF +++ADWL   +  +ERL + F   + K G+ +V SQ +R+Q +N+EDAI+
Sbjct:   54 VPRDKLDIRFSRSSGPGGQNVNKLSTKAEVRFNVQEADWLP--DRVKERLKEMFGTKINKLGEIIVTSQVYRTQYQNLEDAIK 134          
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A152A4S7_9MYCE (RF_PROK_I domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A4S7_9MYCE)

HSP 1 Score: 95.5 bits (236), Expect = 3.430e-23
Identity = 45/88 (51.14%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    1 LHFSTRIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVED 264
            L F+++I VPRD+L L+FSRSSG GGQNVN+V TKAEIRF+L++A+W+   +  +E L K +S+ +   GDF+V S++ R Q +N++D
Sbjct:    7 LLFTSKIIVPRDKLALAFSRSSGAGGQNVNKVNTKAEIRFQLDNANWIP--DYVKENLKKSYSKNLNNDGDFIVTSERHREQKQNLKD 92          
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: UPI001952C9A1 (peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X2 n=3 Tax=Pseudocrenilabrinae TaxID=318546 RepID=UPI001952C9A1)

HSP 1 Score: 95.5 bits (236), Expect = 4.570e-23
Identity = 43/91 (47.25%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 LHFSTRIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
            LH  T++ +P + LT+S+SRSSGPGGQ+VN+V+TKAE+RF ++ A+W+   E  RE++ ++    +TK G+ +V S+  RSQ RN+ D IQ
Sbjct:   16 LHHETQVHIPVERLTISYSRSSGPGGQHVNKVSTKAEVRFHVQTAEWIP--EDVREKILEKNKTRITKAGELLVTSELSRSQQRNLSDCIQ 104          
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: UPI000A2A894A (peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A894A)

HSP 1 Score: 95.1 bits (235), Expect = 1.330e-22
Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 1
Query:   25 VPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAI 270
            VP+D LT+ F+RSSGPGGQNVN+V TK EIRF +E ADW+   E  RE+L K+    V K G+ V+ S +FRSQ +NV+DAI
Sbjct:   54 VPQDRLTIKFARSSGPGGQNVNKVNTKVEIRFHVESADWIP--EEVREKLLKRERNRVNKNGELVLTSTQFRSQLKNVKDAI 133          
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A517ZLY3_9PLAN (Peptidyl-tRNA hydrolase ArfB n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZLY3_9PLAN)

HSP 1 Score: 91.7 bits (226), Expect = 9.040e-22
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 LHFSTRIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAI 270
            L+ +  I++P  ELT +FSRSSGPGGQNVN++ TKA +R+ + ++  L   EG RER  K + R +T  GDFV+ SQ+FR QGRNV D +
Sbjct:    2 LYVNQAIQIPLRELTFTFSRSSGPGGQNVNKLNTKATLRWGVANSPSLS--EGVRERFMKTYHRRLTTDGDFVMHSQRFRDQGRNVADCL 89          
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A3Q1HIM6_ANATE (Mitochondrial ribosomal protein L58 n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HIM6_ANATE)

HSP 1 Score: 92.4 bits (228), Expect = 1.570e-21
Identity = 41/87 (47.13%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   13 TRIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
            T++ +P D LT+S+SRSSGPGGQNVN+V+TKAE+RF ++ ADW+   E  R+++ ++  + + K G+ +V S+  RSQ RN+ D +Q
Sbjct:   51 TQVHIPVDRLTVSYSRSSGPGGQNVNKVSTKAEVRFHVQTADWIP--EDVRQKVFEKNKKRINKAGELLVTSELSRSQQRNLSDCLQ 135          
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A4U5VQF2_COLLU (Peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4U5VQF2_COLLU)

HSP 1 Score: 90.9 bits (224), Expect = 2.180e-21
Identity = 40/86 (46.51%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   16 RIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
            ++ +P + LT+S+SRSSGPGGQ+VN+V+T+AE+RF ++ ADW+   E  R ++ ++   C+ K G+ +V SQ  RSQ RN+ D IQ
Sbjct:    9 QVHIPVERLTVSYSRSSGPGGQHVNKVSTRAEVRFNVKTADWIP--EDVRRKIFEKNKNCINKAGELLVTSQLSRSQQRNLSDCIQ 92          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A383D6Y0_9ZZZZ5.540e-2856.47RF_PROK_I domain-containing protein (Fragment) n=1... [more]
A0A356F8U2_9BACT2.920e-2756.47Aminoacyl-tRNA hydrolase n=1 Tax=Planctomycetes ba... [more]
A0A2D8MZ11_9BACT2.130e-2656.47Aminoacyl-tRNA hydrolase n=1 Tax=Planctomycetes ba... [more]
A0A1X7UWY6_AMPQE3.260e-2353.01RF_PROK_I domain-containing protein n=1 Tax=Amphim... [more]
A0A152A4S7_9MYCE3.430e-2351.14RF_PROK_I domain-containing protein n=1 Tax=Tieghe... [more]
UPI001952C9A14.570e-2347.25peptidyl-tRNA hydrolase ICT1, mitochondrial isofor... [more]
UPI000A2A894A1.330e-2257.32peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Ta... [more]
A0A517ZLY3_9PLAN9.040e-2251.11Peptidyl-tRNA hydrolase ArfB n=3 Tax=Symmachiella ... [more]
A0A3Q1HIM6_ANATE1.570e-2147.13Mitochondrial ribosomal protein L58 n=2 Tax=Anabas... [more]
A0A4U5VQF2_COLLU2.180e-2146.51Peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112767contigM-pyrifera_M_contig112767:1..273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score95.5
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog400682.PAC_15719853
Preferred nameICT1
KEGG koko:K15033
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0015934,GO:0016020,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032984,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0098798,GO:0140053,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.translation release factor activity, codon nonspecific
EggNOG OGs3A880@33154,3BQAM@33208,COG1186@1,KOG3429@2759
EC3.1.1.29
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.3392553-CDS-M-pyrifera_M_contig112767:0..2731622815641.3392553-CDS-M-pyrifera_M_contig112767:0..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112767 1..273 -
1692277500.9296703-CDS-M-pyrifera_M_contig112767:0..2731692277500.9296703-CDS-M-pyrifera_M_contig112767:0..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112767 1..273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112767.2657.1prot_M-pyrifera_M_contig112767.2657.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112767 1..273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112767.2657.1

>prot_M-pyrifera_M_contig112767.2657.1 ID=prot_M-pyrifera_M_contig112767.2657.1|Name=mRNA_M-pyrifera_M_contig112767.2657.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
LHFSTRIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDV
VEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ
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mRNA from alignment at M-pyrifera_M_contig112767:1..273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112767.2657.1 ID=mRNA_M-pyrifera_M_contig112767.2657.1|Name=mRNA_M-pyrifera_M_contig112767.2657.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig112767:1..273- (Macrocystis pyrifera P11B4 male)
CTACACTTTTCAACGAGAATACGAGTGCCCAGAGATGAGCTCACGTTGTC TTTCTCGCGTTCTTCGGGTCCTGGGGGCCAGAATGTGAACAGGGTTGCTA CAAAGGCAGAGATCCGGTTTCGATTGGAGGATGCAGATTGGTTGGATGTG GTGGAAGGGACGAGGGAACGGTTGGCAAAGCAGTTTTCTCGATGTGTGAC AAAAAAAGGGGACTTTGTTGTGGTGAGCCAGAAGTTTCGGTCCCAGGGTA GAAATGTGGAGGATGCAATTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112767:1..273-

>mRNA_M-pyrifera_M_contig112767.2657.1 ID=mRNA_M-pyrifera_M_contig112767.2657.1|Name=mRNA_M-pyrifera_M_contig112767.2657.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig112767:1..273- (Macrocystis pyrifera P11B4 male)
CTACACTTTTCAACGAGAATACGAGTGCCCAGAGATGAGCTCACGTTGTC
TTTCTCGCGTTCTTCGGGTCCTGGGGGCCAGAATGTGAACAGGGTTGCTA
CAAAGGCAGAGATCCGGTTTCGATTGGAGGATGCAGATTGGTTGGATGTG
GTGGAAGGGACGAGGGAACGGTTGGCAAAGCAGTTTTCTCGATGTGTGAC
AAAAAAAGGGGACTTTGTTGTGGTGAGCCAGAAGTTTCGGTCCCAGGGTA
GAAATGTGGAGGATGCAATTCAGCTACACTTTTCAACGAGAATACGAGTG
CCCAGAGATGAGCTCACGTTGTCTTTCTCGCGTTCTTCGGGTCCTGGGGG
CCAGAATGTGAACAGGGTTGCTACAAAGGCAGAGATCCGGTTTCGATTGG
AGGATGCAGATTGGTTGGATGTGGTGGAAGGGACGAGGGAACGGTTGGCA
AAGCAGTTTTCTCGATGTGTGACAAAAAAAGGGGACTTTGTTGTGGTGAG
CCAGAAGTTTCGGTCCCAGGGTAGAAATGTGGAGGATGCAATTCAG
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