mRNA_M-pyrifera_M_contig112752.2652.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A5A8CY57_CAFRO (Ribosomal_L18e/L15P domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CY57_CAFRO) HSP 1 Score: 181 bits (460), Expect = 9.540e-56 Identity = 93/142 (65.49%), Postives = 111/142 (78.17%), Query Frame = 1
Query: 4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
G D+VAGGR+ HK R AP SEN YL LLVKLY FL+RR S F + KRLM SR N PP+GLAR+ARYM+G+E +T VFVGT+TDDVRL G L A+TI ALR T+GARAR+ AAGGK LTFD+ A+E+P G+NTV+LRG
Sbjct: 2 GIDLVAGGRVVGHKHRTAPKSENAYLGLLVKLYEFLARRTGSDFCTAVHKRLMMSRANIPPMGLARIARYMKGKEDKTCVFVGTITDDVRLNGFKLAAMTICALRFTEGARARIEAAGGKCLTFDQLAQEAPRGSNTVLLRG 143
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A061SDM1_9CHLO (Large subunit ribosomal protein L18e n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SDM1_9CHLO) HSP 1 Score: 164 bits (416), Expect = 4.420e-49 Identity = 85/142 (59.86%), Postives = 112/142 (78.87%), Query Frame = 1
Query: 4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
G DI AGGR+TK+ +R AP SENVYL+LLVKLY FL+RR +S FNK++LKR+ S+TNRPPL L+R+ARYM+G+E + AV VG VTDDVR+ + + L + AL+ ++ ARAR+ AGG+ LTFD+ A SPTG+NTV+LRG
Sbjct: 2 GIDIKAGGRVTKNARRTAPKSENVYLQLLVKLYRFLARRTDSSFNKIVLKRMFMSKTNRPPLSLSRLARYMKGKEDKIAVLVGKVTDDVRM--YEVPKLRVCALKFSETARARILKAGGECLTFDQLALASPTGSNTVLLRG 141
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A812TYC8_9DINO (RPL18C protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TYC8_9DINO) HSP 1 Score: 166 bits (420), Expect = 3.160e-48 Identity = 87/146 (59.59%), Postives = 107/146 (73.29%), Query Frame = 1
Query: 4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTA----VFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
GKD+VAGGR HK R P SEN+Y+RLLVKLY FL+RR +S FN +LKRLM SR NRPP+GL RV RY + A V VGTVTDDVRL GH + A+ +VALR T+GARAR+ AAGG ++TFD+ A E+P G +T++LRG
Sbjct: 111 GKDLVAGGRRVGHKNRTKPKSENIYVRLLVKLYKFLARRTDSDFNARVLKRLMMSRNNRPPMGLNRVLRYATAKPGVAAKNYMVVVGTVTDDVRLAGHDIPAIKLVALRVTEGARARIEAAGGSVMTFDQLAMEAPKGEDTLLLRG 256
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A024TMV8_9STRA (Ribosomal_L18e/L15P domain-containing protein n=8 Tax=Eukaryota TaxID=2759 RepID=A0A024TMV8_9STRA) HSP 1 Score: 162 bits (410), Expect = 4.060e-48 Identity = 88/142 (61.97%), Postives = 107/142 (75.35%), Query Frame = 1
Query: 4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
GKDIVAGG+ T K R AP SENVYL LLV+LY FL+RR ++ FN+ +LKRL SRTN+PP+ +ARVARYM+ +E Q AV VGT+TDD+RL P LTI AL T+ ARARV AGG+ILTFD+ A +P G NTV+LRG
Sbjct: 2 GKDIVAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNQNVLKRLYMSRTNQPPMSIARVARYMKNKEDQIAVVVGTITDDIRLFDVPK--LTIAALGFTESARARVLKAGGEILTFDQLALRAPKGQNTVLLRG 141
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A418B288_9STRA (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418B288_9STRA) HSP 1 Score: 162 bits (410), Expect = 6.000e-48 Identity = 88/142 (61.97%), Postives = 107/142 (75.35%), Query Frame = 1
Query: 4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
GKDIVAGG+ T K R AP SENVYL LLV+LY FL+RR ++ FN+ +LKRL SRTN+PP+ +ARVARYM+ +E Q AV VGT+TDD+RL P LTI AL T+ ARARV AGG+ILTFD+ A +P G NTV+LRG
Sbjct: 15 GKDIVAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNQNVLKRLYMSRTNQPPMSIARVARYMKNKEDQIAVVVGTITDDIRLFDVPK--LTIAALGFTESARARVLKAGGEILTFDQLALRAPKGQNTVLLRG 154
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: I0YL22_COCSC (Ribosomal protein L18 component of cytosolic 80S ribosome and 60S large subunit n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YL22_COCSC) HSP 1 Score: 161 bits (408), Expect = 6.800e-48 Identity = 89/142 (62.68%), Postives = 109/142 (76.76%), Query Frame = 1
Query: 4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
G D+ AGGR K R AP SENVYL+LLVKLY+FL RR S FNKV+LKRL SRTNRPPL L+++A +M+G+E +TAV +GT+TDDVRL P LT+VALR T+ ARAR+ AGGKILTFD+ A +PTG+N V+LRG
Sbjct: 2 GIDLEAGGR-NKKTWRTAPKSENVYLKLLVKLYTFLVRRTESKFNKVVLKRLFMSRTNRPPLSLSKLATFMKGKEDKTAVLIGTITDDVRLFEVPK--LTVVALRVTETARARILGAGGKILTFDQLALLAPTGSNCVLLRG 140
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A7S3V3K8_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V3K8_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.200e-45 Identity = 82/142 (57.75%), Postives = 103/142 (72.54%), Query Frame = 1
Query: 4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
G D+VAGGR HK R AP S+NVYL+LLVKLY FL+RR ++ FNK++LKRL S+ NRPP+GL R+ RY +G+E + V VGTVTDD R+ P AL I AL+ TD ARAR+ AGG+ LTFD+ A P G NT++LRG
Sbjct: 2 GIDLVAGGRYVGHKNRTAPQSDNVYLKLLVKLYRFLARRTDAKFNKIVLKRLYMSKVNRPPMGLNRLVRYAKGKEDKIVVVVGTVTDDARMRKVP--ALKICALKFTDSARARILQAGGECLTFDQLALVEPKGTNTLLLRG 141
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A0D2N5I1_9CHLO (60S ribosomal protein L18-3 n=2 Tax=Selenastraceae TaxID=35466 RepID=A0A0D2N5I1_9CHLO) HSP 1 Score: 155 bits (392), Expect = 1.870e-45 Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = 1
Query: 4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
G D+VAGGR TK K R AP S+NVYL+LLVKLY FL RR S FN V+LKRL S+ NRPPL L+++A++M G+E + AV VGTVTDDVRL H + L + ALR T+ ARAR+ AGG+ LTFD+ A E PTG + V+LRG
Sbjct: 2 GIDLVAGGRNTK-KHRTAPKSDNVYLKLLVKLYRFLERRTESNFNAVVLKRLFMSKINRPPLSLSKLAKFMAGKEDKVAVLVGTVTDDVRL--HEVPKLRVTALRFTETARARIVKAGGECLTFDQLALERPTGKDCVLLRG 140
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A4D9D1Z3_9STRA (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1Z3_9STRA) HSP 1 Score: 154 bits (390), Expect = 4.230e-45 Identity = 81/142 (57.04%), Postives = 105/142 (73.94%), Query Frame = 1
Query: 4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
G D+ +GGR T HK R AP S+NVYL+LLVKLY FL+RR +S FN VILKRL S+ NRPP+ ++R+ R+M+G+E +TAV VGT+TDD R+ P L++ AL+ T ARAR+ AGG+ILTFDE A +P G N V+LRG
Sbjct: 2 GIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPK--LSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRG 141
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A7S2UVJ6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVJ6_9STRA) HSP 1 Score: 154 bits (388), Expect = 8.760e-45 Identity = 82/142 (57.75%), Postives = 105/142 (73.94%), Query Frame = 1
Query: 4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
G D+ AGGR HK R +P S+NVYL LLV+LY FL+RR +S F KV+LKRL S+TN PP+ ++R+ RYM+G+E QTAV VGTVTDD RL P AL + AL+ T+ ARAR+ AGG++LTFD+ A + P GA TV+LRG
Sbjct: 2 GIDLKAGGRRVGHKVRTSPKSKNVYLNLLVRLYRFLARRTDSKFVKVVLKRLYMSKTNSPPMSISRLTRYMKGKEDQTAVIVGTVTDDSRLLKLP--ALKVCALKFTEAARARILKAGGEVLTFDQLALQQPKGAGTVLLRG 141 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112752.2652.1 >prot_M-pyrifera_M_contig112752.2652.1 ID=prot_M-pyrifera_M_contig112752.2652.1|Name=mRNA_M-pyrifera_M_contig112752.2652.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp QGKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILback to top mRNA from alignment at M-pyrifera_M_contig112752:2..430- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112752.2652.1 ID=mRNA_M-pyrifera_M_contig112752.2652.1|Name=mRNA_M-pyrifera_M_contig112752.2652.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig112752:2..430- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112752:2..430- >mRNA_M-pyrifera_M_contig112752.2652.1 ID=mRNA_M-pyrifera_M_contig112752.2652.1|Name=mRNA_M-pyrifera_M_contig112752.2652.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig112752:2..430- (Macrocystis pyrifera P11B4 male)back to top |