mRNA_M-pyrifera_M_contig112752.2652.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112752.2652.1
Unique NamemRNA_M-pyrifera_M_contig112752.2652.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A5A8CY57_CAFRO (Ribosomal_L18e/L15P domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CY57_CAFRO)

HSP 1 Score: 181 bits (460), Expect = 9.540e-56
Identity = 93/142 (65.49%), Postives = 111/142 (78.17%), Query Frame = 1
Query:    4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
            G D+VAGGR+  HK R AP SEN YL LLVKLY FL+RR  S F   + KRLM SR N PP+GLAR+ARYM+G+E +T VFVGT+TDDVRL G  L A+TI ALR T+GARAR+ AAGGK LTFD+ A+E+P G+NTV+LRG
Sbjct:    2 GIDLVAGGRVVGHKHRTAPKSENAYLGLLVKLYEFLARRTGSDFCTAVHKRLMMSRANIPPMGLARIARYMKGKEDKTCVFVGTITDDVRLNGFKLAAMTICALRFTEGARARIEAAGGKCLTFDQLAQEAPRGSNTVLLRG 143          
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A061SDM1_9CHLO (Large subunit ribosomal protein L18e n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SDM1_9CHLO)

HSP 1 Score: 164 bits (416), Expect = 4.420e-49
Identity = 85/142 (59.86%), Postives = 112/142 (78.87%), Query Frame = 1
Query:    4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
            G DI AGGR+TK+ +R AP SENVYL+LLVKLY FL+RR +S FNK++LKR+  S+TNRPPL L+R+ARYM+G+E + AV VG VTDDVR+  + +  L + AL+ ++ ARAR+  AGG+ LTFD+ A  SPTG+NTV+LRG
Sbjct:    2 GIDIKAGGRVTKNARRTAPKSENVYLQLLVKLYRFLARRTDSSFNKIVLKRMFMSKTNRPPLSLSRLARYMKGKEDKIAVLVGKVTDDVRM--YEVPKLRVCALKFSETARARILKAGGECLTFDQLALASPTGSNTVLLRG 141          
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A812TYC8_9DINO (RPL18C protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TYC8_9DINO)

HSP 1 Score: 166 bits (420), Expect = 3.160e-48
Identity = 87/146 (59.59%), Postives = 107/146 (73.29%), Query Frame = 1
Query:    4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTA----VFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
            GKD+VAGGR   HK R  P SEN+Y+RLLVKLY FL+RR +S FN  +LKRLM SR NRPP+GL RV RY   +    A    V VGTVTDDVRL GH + A+ +VALR T+GARAR+ AAGG ++TFD+ A E+P G +T++LRG
Sbjct:  111 GKDLVAGGRRVGHKNRTKPKSENIYVRLLVKLYKFLARRTDSDFNARVLKRLMMSRNNRPPMGLNRVLRYATAKPGVAAKNYMVVVGTVTDDVRLAGHDIPAIKLVALRVTEGARARIEAAGGSVMTFDQLAMEAPKGEDTLLLRG 256          
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A024TMV8_9STRA (Ribosomal_L18e/L15P domain-containing protein n=8 Tax=Eukaryota TaxID=2759 RepID=A0A024TMV8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 4.060e-48
Identity = 88/142 (61.97%), Postives = 107/142 (75.35%), Query Frame = 1
Query:    4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
            GKDIVAGG+ T  K R AP SENVYL LLV+LY FL+RR ++ FN+ +LKRL  SRTN+PP+ +ARVARYM+ +E Q AV VGT+TDD+RL   P   LTI AL  T+ ARARV  AGG+ILTFD+ A  +P G NTV+LRG
Sbjct:    2 GKDIVAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNQNVLKRLYMSRTNQPPMSIARVARYMKNKEDQIAVVVGTITDDIRLFDVPK--LTIAALGFTESARARVLKAGGEILTFDQLALRAPKGQNTVLLRG 141          
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A418B288_9STRA (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418B288_9STRA)

HSP 1 Score: 162 bits (410), Expect = 6.000e-48
Identity = 88/142 (61.97%), Postives = 107/142 (75.35%), Query Frame = 1
Query:    4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
            GKDIVAGG+ T  K R AP SENVYL LLV+LY FL+RR ++ FN+ +LKRL  SRTN+PP+ +ARVARYM+ +E Q AV VGT+TDD+RL   P   LTI AL  T+ ARARV  AGG+ILTFD+ A  +P G NTV+LRG
Sbjct:   15 GKDIVAGGKSTGRKSRTAPKSENVYLNLLVRLYRFLARRTDAKFNQNVLKRLYMSRTNQPPMSIARVARYMKNKEDQIAVVVGTITDDIRLFDVPK--LTIAALGFTESARARVLKAGGEILTFDQLALRAPKGQNTVLLRG 154          
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: I0YL22_COCSC (Ribosomal protein L18 component of cytosolic 80S ribosome and 60S large subunit n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YL22_COCSC)

HSP 1 Score: 161 bits (408), Expect = 6.800e-48
Identity = 89/142 (62.68%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
            G D+ AGGR  K   R AP SENVYL+LLVKLY+FL RR  S FNKV+LKRL  SRTNRPPL L+++A +M+G+E +TAV +GT+TDDVRL   P   LT+VALR T+ ARAR+  AGGKILTFD+ A  +PTG+N V+LRG
Sbjct:    2 GIDLEAGGR-NKKTWRTAPKSENVYLKLLVKLYTFLVRRTESKFNKVVLKRLFMSRTNRPPLSLSKLATFMKGKEDKTAVLIGTITDDVRLFEVPK--LTVVALRVTETARARILGAGGKILTFDQLALLAPTGSNCVLLRG 140          
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A7S3V3K8_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V3K8_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.200e-45
Identity = 82/142 (57.75%), Postives = 103/142 (72.54%), Query Frame = 1
Query:    4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
            G D+VAGGR   HK R AP S+NVYL+LLVKLY FL+RR ++ FNK++LKRL  S+ NRPP+GL R+ RY +G+E +  V VGTVTDD R+   P  AL I AL+ TD ARAR+  AGG+ LTFD+ A   P G NT++LRG
Sbjct:    2 GIDLVAGGRYVGHKNRTAPQSDNVYLKLLVKLYRFLARRTDAKFNKIVLKRLYMSKVNRPPMGLNRLVRYAKGKEDKIVVVVGTVTDDARMRKVP--ALKICALKFTDSARARILQAGGECLTFDQLALVEPKGTNTLLLRG 141          
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A0D2N5I1_9CHLO (60S ribosomal protein L18-3 n=2 Tax=Selenastraceae TaxID=35466 RepID=A0A0D2N5I1_9CHLO)

HSP 1 Score: 155 bits (392), Expect = 1.870e-45
Identity = 85/142 (59.86%), Postives = 105/142 (73.94%), Query Frame = 1
Query:    4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
            G D+VAGGR TK K R AP S+NVYL+LLVKLY FL RR  S FN V+LKRL  S+ NRPPL L+++A++M G+E + AV VGTVTDDVRL  H +  L + ALR T+ ARAR+  AGG+ LTFD+ A E PTG + V+LRG
Sbjct:    2 GIDLVAGGRNTK-KHRTAPKSDNVYLKLLVKLYRFLERRTESNFNAVVLKRLFMSKINRPPLSLSKLAKFMAGKEDKVAVLVGTVTDDVRL--HEVPKLRVTALRFTETARARIVKAGGECLTFDQLALERPTGKDCVLLRG 140          
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A4D9D1Z3_9STRA (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1Z3_9STRA)

HSP 1 Score: 154 bits (390), Expect = 4.230e-45
Identity = 81/142 (57.04%), Postives = 105/142 (73.94%), Query Frame = 1
Query:    4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
            G D+ +GGR T HK R AP S+NVYL+LLVKLY FL+RR +S FN VILKRL  S+ NRPP+ ++R+ R+M+G+E +TAV VGT+TDD R+   P   L++ AL+ T  ARAR+  AGG+ILTFDE A  +P G N V+LRG
Sbjct:    2 GIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPK--LSVAALKVTATARARILQAGGEILTFDELALRAPKGTNCVLLRG 141          
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Match: A0A7S2UVJ6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVJ6_9STRA)

HSP 1 Score: 154 bits (388), Expect = 8.760e-45
Identity = 82/142 (57.75%), Postives = 105/142 (73.94%), Query Frame = 1
Query:    4 GKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVILKRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKALTIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG 429
            G D+ AGGR   HK R +P S+NVYL LLV+LY FL+RR +S F KV+LKRL  S+TN PP+ ++R+ RYM+G+E QTAV VGTVTDD RL   P  AL + AL+ T+ ARAR+  AGG++LTFD+ A + P GA TV+LRG
Sbjct:    2 GIDLKAGGRRVGHKVRTSPKSKNVYLNLLVRLYRFLARRTDSKFVKVVLKRLYMSKTNSPPMSISRLTRYMKGKEDQTAVIVGTVTDDSRLLKLP--ALKVCALKFTEAARARILKAGGEVLTFDQLALQQPKGAGTVLLRG 141          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112752.2652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CY57_CAFRO9.540e-5665.49Ribosomal_L18e/L15P domain-containing protein n=3 ... [more]
A0A061SDM1_9CHLO4.420e-4959.86Large subunit ribosomal protein L18e n=1 Tax=Tetra... [more]
A0A812TYC8_9DINO3.160e-4859.59RPL18C protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A024TMV8_9STRA4.060e-4861.97Ribosomal_L18e/L15P domain-containing protein n=8 ... [more]
A0A418B288_9STRA6.000e-4861.97Ribosomal_L18e/L15P domain-containing protein n=2 ... [more]
I0YL22_COCSC6.800e-4862.68Ribosomal protein L18 component of cytosolic 80S r... [more]
A0A7S3V3K8_9STRA1.200e-4557.75Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A0D2N5I1_9CHLO1.870e-4559.8660S ribosomal protein L18-3 n=2 Tax=Selenastraceae... [more]
A0A4D9D1Z3_9STRA4.230e-4557.04Ribosomal_L18e/L15P domain-containing protein n=2 ... [more]
A0A7S2UVJ6_9STRA8.760e-4557.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112752contigM-pyrifera_M_contig112752:2..430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.0
Seed ortholog evalue4e-40
Seed eggNOG ortholog112098.XP_008607735.1
Preferred nameRPL18
KEGG koko:K02883,ko:K18749,ko:K21442
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0071704,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal protein
EggNOG OGsCOG1727@1,KOG1714@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko04131
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.13309-CDS-M-pyrifera_M_contig112752:1..4301622815641.13309-CDS-M-pyrifera_M_contig112752:1..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112752 2..430 -
1692277500.834359-CDS-M-pyrifera_M_contig112752:1..4301692277500.834359-CDS-M-pyrifera_M_contig112752:1..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112752 2..430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112752.2652.1prot_M-pyrifera_M_contig112752.2652.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112752 2..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112752.2652.1

>prot_M-pyrifera_M_contig112752.2652.1 ID=prot_M-pyrifera_M_contig112752.2652.1|Name=mRNA_M-pyrifera_M_contig112752.2652.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
QGKDIVAGGRITKHKQRKAPVSENVYLRLLVKLYSFLSRRVNSGFNKVIL
KRLMASRTNRPPLGLARVARYMRGRETQTAVFVGTVTDDVRLTGHPLKAL
TIVALRATDGARARVAAAGGKILTFDEFARESPTGANTVILRG
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mRNA from alignment at M-pyrifera_M_contig112752:2..430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112752.2652.1 ID=mRNA_M-pyrifera_M_contig112752.2652.1|Name=mRNA_M-pyrifera_M_contig112752.2652.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig112752:2..430- (Macrocystis pyrifera P11B4 male)
CAGGGAAAAGATATCGTCGCAGGTGGGCGCATCACGAAGCACAAGCAGCG CAAGGCTCCCGTGAGCGAGAACGTGTACTTGCGTTTGCTGGTGAAGTTGT ACTCCTTCTTGTCTCGTCGCGTGAACTCTGGTTTCAACAAGGTGATCCTG AAGCGCCTCATGGCGAGCCGCACGAACCGCCCACCTTTGGGATTGGCTCG CGTGGCGCGCTACATGCGCGGTCGTGAGACGCAGACTGCCGTGTTCGTCG GCACCGTGACGGACGACGTGCGCTTGACTGGCCACCCACTCAAGGCCCTC ACCATCGTTGCCCTCCGCGCCACAGACGGCGCTCGGGCCCGTGTCGCTGC TGCCGGAGGTAAGATCCTCACCTTTGACGAGTTTGCCCGCGAAAGCCCAA CTGGCGCCAACACCGTCATCCTCCGAGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112752:2..430-

>mRNA_M-pyrifera_M_contig112752.2652.1 ID=mRNA_M-pyrifera_M_contig112752.2652.1|Name=mRNA_M-pyrifera_M_contig112752.2652.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig112752:2..430- (Macrocystis pyrifera P11B4 male)
CAGGGAAAAGATATCGTCGCAGGTGGGCGCATCACGAAGCACAAGCAGCG
CAAGGCTCCCGTGAGCGAGAACGTGTACTTGCGTTTGCTGGTGAAGTTGT
ACTCCTTCTTGTCTCGTCGCGTGAACTCTGGTTTCAACAAGGTGATCCTG
AAGCGCCTCATGGCGAGCCGCACGAACCGCCCACCTTTGGGATTGGCTCG
CGTGGCGCGCTACATGCGCGGTCGTGAGACGCAGACTGCCGTGTTCGTCG
GCACCGTGACGGACGACGTGCGCTTGACTGGCCACCCACTCAAGGCCCTC
ACCATCGTTGCCCTCCGCGCCACAGACGGCGCTCGGGCCCGTGTCGCTGC
TGCCGGAGGTAAGATCCTCACCTTTGACGAGTTTGCCCGCGAAAGCCCAA
CTGGCGCCAACACCGTCATCCTCCGAGGCCAGGGAAAAGATATCGTCGCA
GGTGGGCGCATCACGAAGCACAAGCAGCGCAAGGCTCCCGTGAGCGAGAA
CGTGTACTTGCGTTTGCTGGTGAAGTTGTACTCCTTCTTGTCTCGTCGCG
TGAACTCTGGTTTCAACAAGGTGATCCTGAAGCGCCTCATGGCGAGCCGC
ACGAACCGCCCACCTTTGGGATTGGCTCGCGTGGCGCGCTACATGCGCGG
TCGTGAGACGCAGACTGCCGTGTTCGTCGGCACCGTGACGGACGACGTGC
GCTTGACTGGCCACCCACTCAAGGCCCTCACCATCGTTGCCCTCCGCGCC
ACAGACGGCGCTCGGGCCCGTGTCGCTGCTGCCGGAGGTAAGATCCTCAC
CTTTGACGAGTTTGCCCGCGAAAGCCCAACTGGCGCCAACACCGTCATCC
TCCGAGGC
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