mRNA_M-pyrifera_M_contig112735.2646.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112735.2646.1
Unique NamemRNA_M-pyrifera_M_contig112735.2646.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Match: A0A7S4HXJ7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HXJ7_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 2.860e-38
Identity = 67/123 (54.47%), Postives = 94/123 (76.42%), Query Frame = 1
Query:   16 DLVVDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACISILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAKVLVLASGLEASQTETSSTVLMTSADELM 384
            DL VDTV D+ + E++ KAL+SAI +K YG E ++APLVAKACI ILP +   F VD++R+CK++G GV D+ + +GFALPKD+ G++KHVKNA + V    LE S++ET  TVL+T+AD+L+
Sbjct:  143 DLAVDTVTDVTNVEQITKALKSAITSKVYGWEGIIAPLVAKACIHILPSDRKDFVVDNIRICKILGAGVSDSCLIRGFALPKDAEGSIKHVKNAVIAVFGGPLEPSKSETKGTVLLTNADDLL 265          
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Match: L8GUN4_ACACA (CCT-theta n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GUN4_ACACA)

HSP 1 Score: 135 bits (339), Expect = 9.580e-35
Identity = 66/122 (54.10%), Postives = 93/122 (76.23%), Query Frame = 1
Query:   19 LVVDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACISILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAKVLVLASGLEASQTETSSTVLMTSADELM 384
            L   T +D+R+ EEV + L+SAIA+KQYG ED+L+ +VAKACI +LP+N   F+VD VRV K++GGGV DT V KGF L +D+ GT+KHV +AK+ V A+G++ ++TET + V + SADEL+
Sbjct:  141 LACHTCEDLRNIEEVTRCLKSAIASKQYGYEDMLSKVVAKACIQVLPKNTSKFNVDHVRVVKILGGGVLDTHVMKGFVLARDAVGTIKHVTSAKIAVFATGIDLAKTETKANVTLKSADELL 262          
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Match: A0A6T8JWW1_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A6T8JWW1_HEMAN)

HSP 1 Score: 130 bits (328), Expect = 3.450e-33
Identity = 68/120 (56.67%), Postives = 88/120 (73.33%), Query Frame = 1
Query:   25 VDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACISILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAKVLVLASGLEASQTETSSTVLMTSADELM 384
            V  VKD+ + +EV KAL S IAAKQYG ED LAPLVAKAC+ ILP++P  FSVD+VRV K+ G  V ++ + KGF L +D+ GT+KHVK AKV+V  + ++ S TET   VL+ +ADELM
Sbjct:  150 VQRVKDLTNVDEVTKALHSCIAAKQYGLEDFLAPLVAKACVQILPKDPANFSVDNVRVAKIPGMTVGESFLMKGFVLTRDAEGTIKHVKGAKVVVFGTEVDLSATETKGNVLIKNADELM 269          
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Match: A0A366PLR3_VERDA (Uncharacterized protein n=1 Tax=Verticillium dahliae TaxID=27337 RepID=A0A366PLR3_VERDA)

HSP 1 Score: 127 bits (320), Expect = 3.370e-32
Identity = 63/123 (51.22%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   16 DLVVDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACISILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAKVLVLASGLEASQTETSSTVLMTSADELM 384
            +L VD V+DIRD +E+ KA+R+ +A+KQ G ED L  LVA+A +S+LP+NPL F+VD++RV K+MGG ++ ++V KG   PK   GT+K VK AKV V +  ++ SQTET  TVL+ +A E+M
Sbjct:  144 ELSVDRVEDIRDQDELAKAIRTVVASKQNGHEDFLGDLVAEAVLSVLPKNPLGFNVDNIRVVKIMGGSLEQSRVVKGMVFPKQPDGTIKKVKRAKVGVFSCPIDTSQTETKGTVLLHNAKEMM 266          
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Match: A0A3N4L6G5_9PEZI (CCT-theta n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4L6G5_9PEZI)

HSP 1 Score: 127 bits (320), Expect = 5.150e-32
Identity = 65/128 (50.78%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    1 LTAGPDLVVDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACISILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAKVLVLASGLEASQTETSSTVLMTSADELM 384
            L A  +L +D V+DI    E+ KALR+ IA+KQ G EDLLAPLVA+A ++++P+NP+ F+VD+VRV KVMGGG+ D++V +G   P++  G+VK  K AKV V A  ++ SQTET  TVL+ +A E++
Sbjct:  139 LKALEELAIDKVQDINSKTELTKALRTVIASKQSGNEDLLAPLVAEAVLAVMPKNPINFNVDNVRVVKVMGGGLSDSRVVRGMVFPREPEGSVKSAKKAKVGVFACPIDISQTETKGTVLLHNAKEML 266          
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Match: C9SVL1_VERA1 (T-complex protein 1 subunit theta n=9 Tax=Glomerellales TaxID=1028384 RepID=C9SVL1_VERA1)

HSP 1 Score: 126 bits (316), Expect = 1.840e-31
Identity = 62/123 (50.41%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   16 DLVVDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACISILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAKVLVLASGLEASQTETSSTVLMTSADELM 384
            +L VD V+DIRD +E+ KA+R+ +A+KQ G ED L  LVA+A +S+LP+NPL F+VD++RV K+MGG ++ ++V KG   PK   GT+K VK AKV V +  ++ SQTET  TVL+ +A ++M
Sbjct:  144 ELSVDRVEDIRDQDELAKAIRTVVASKQNGHEDFLGDLVAEAVLSVLPKNPLGFNVDNIRVVKIMGGSLEQSRVVKGMVFPKQPDGTIKKVKRAKVGVFSCPIDTSQTETKGTVLLHNAKKMM 266          
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Match: A0A3N4ISM2_ASCIM (CCT-theta n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4ISM2_ASCIM)

HSP 1 Score: 126 bits (316), Expect = 1.840e-31
Identity = 63/128 (49.22%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 LTAGPDLVVDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACISILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAKVLVLASGLEASQTETSSTVLMTSADELM 384
            L A  +LVVD VKDIR+ EE+ KA+R+ I +KQ+G ED+LAPLVA+A + +LP+NP  F+VD++RV K+MGGG+ D+KV KG    ++   T K    AKV V +  ++  QTET  TVL+ +A E++
Sbjct:  139 LKALDELVVDKVKDIRNAEELTKAIRTVIGSKQFGNEDILAPLVAEAILMVLPKNPTQFNVDNIRVVKIMGGGLMDSKVIKGMVFAREPESTTKKATKAKVAVFSCPIDIGQTETKGTVLLHNAQEML 266          
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Match: A0A4Q3NA08_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=A0A4Q3NA08_9BACT)

HSP 1 Score: 121 bits (304), Expect = 2.350e-31
Identity = 62/123 (50.41%), Postives = 91/123 (73.98%), Query Frame = 1
Query:   16 DLVVDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACISILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAKVLVLASGLEASQTETSSTVLMTSADELM 384
            +L VD VKD+RD EE+ KALR+ IAAKQ G ED+LA LVA+A +++LP+N   F+VD+VRV K+MGG ++ ++V KG    ++  GTVK+V+ AKV V +  ++ +QTET  TVL+ +A E++
Sbjct:  116 ELEVDRVKDMRDQEELSKALRTVIAAKQSGHEDVLANLVAEAVLAVLPKNTFNFNVDNVRVVKIMGGSIEQSRVVKGMVFGREPEGTVKNVQKAKVGVFSCPIDIAQTETKGTVLLKNAQEML 238          
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Match: F4PZN2_CAVFA (CCT-theta n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PZN2_CAVFA)

HSP 1 Score: 124 bits (312), Expect = 6.250e-31
Identity = 63/122 (51.64%), Postives = 90/122 (73.77%), Query Frame = 1
Query:   19 LVVDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACISILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAKVLVLASGLEASQTETSSTVLMTSADELM 384
            LV+  + DIR+ EEV K L++++A+KQYG E+LL+ L+AKAC+ + P+NP  F+VD++RV KV GGGV DT V KGF +  D+ GT+K V+ AKV V ASG++  +TETS  VL+T+  E +
Sbjct:  139 LVIYRLGDIRNIEEVKKCLKASLASKQYGYENLLSDLIAKACVQVCPKNPSNFNVDNIRVTKVPGGGVGDTTVIKGFVVIGDTDGTLKRVEKAKVAVFASGIDVGKTETSGKVLITNEQEFL 260          
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Match: A0A2L1K0F4_9EURO (CCT-theta (Fragment) n=2 Tax=Aspergillus TaxID=5052 RepID=A0A2L1K0F4_9EURO)

HSP 1 Score: 123 bits (309), Expect = 7.420e-31
Identity = 63/128 (49.22%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    1 LTAGPDLVVDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACISILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAKVLVLASGLEASQTETSSTVLMTSADELM 384
            L A  DL VD +K++R  +E+CKALR+ +A+KQ G ED LA LVA+A +++LP+NPL F+VD+VRV K+MGG V+ ++V KG  L ++  GT+K  + AKV V +  ++ SQTET  TVL+ +A E++
Sbjct:   89 LKALEDLEVDRLKELRSQQELCKALRTVVASKQSGLEDPLASLVAEAVLAVLPKNPLNFNVDNVRVVKIMGGSVEQSRVVKGMVLGREPDGTIKKTQKAKVGVFSCPIDISQTETKGTVLLKNAQEML 216          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112735.2646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HXJ7_9EUKA2.860e-3854.47Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
L8GUN4_ACACA9.580e-3554.10CCT-theta n=1 Tax=Acanthamoeba castellanii str. Ne... [more]
A0A6T8JWW1_HEMAN3.450e-3356.67Hypothetical protein n=3 Tax=Hemiselmis TaxID=7792... [more]
A0A366PLR3_VERDA3.370e-3251.22Uncharacterized protein n=1 Tax=Verticillium dahli... [more]
A0A3N4L6G5_9PEZI5.150e-3250.78CCT-theta n=1 Tax=Terfezia boudieri ATCC MYA-4762 ... [more]
C9SVL1_VERA11.840e-3150.41T-complex protein 1 subunit theta n=9 Tax=Glomerel... [more]
A0A3N4ISM2_ASCIM1.840e-3149.22CCT-theta n=1 Tax=Ascobolus immersus RN42 TaxID=11... [more]
A0A4Q3NA08_9BACT2.350e-3150.41Uncharacterized protein (Fragment) n=1 Tax=Cytopha... [more]
F4PZN2_CAVFA6.250e-3151.64CCT-theta n=1 Tax=Cavenderia fasciculata (strain S... [more]
A0A2L1K0F4_9EURO7.420e-3149.22CCT-theta (Fragment) n=2 Tax=Aspergillus TaxID=505... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112735contigM-pyrifera_M_contig112735:198..581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score130.6
Seed ortholog evalue5.3e-28
Seed eggNOG ortholog27337.EGY20603
Preferred nameCCT8
KEGG koko:K09500
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031
EggNOG free text desc.T-complex protein 1
EggNOG OGs1EZ7E@1028384,2120B@147550,38CBH@33154,3NUID@4751,3QKFA@4890,KOG0362@1,KOG0362@2759
COG Functional cat.O
Best tax levelGlomerellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.8696322-CDS-M-pyrifera_M_contig112735:197..5811622815640.8696322-CDS-M-pyrifera_M_contig112735:197..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112735 198..581 +
1692277500.7530487-CDS-M-pyrifera_M_contig112735:197..5811692277500.7530487-CDS-M-pyrifera_M_contig112735:197..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112735 198..581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112735.2646.1prot_M-pyrifera_M_contig112735.2646.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112735 198..581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112735.2646.1

>prot_M-pyrifera_M_contig112735.2646.1 ID=prot_M-pyrifera_M_contig112735.2646.1|Name=mRNA_M-pyrifera_M_contig112735.2646.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
LTAGPDLVVDTVKDIRDTEEVCKALRSAIAAKQYGREDLLAPLVAKACIS
ILPENPLAFSVDSVRVCKVMGGGVDDTKVFKGFALPKDSAGTVKHVKNAK
VLVLASGLEASQTETSSTVLMTSADELM
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mRNA from alignment at M-pyrifera_M_contig112735:198..581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112735.2646.1 ID=mRNA_M-pyrifera_M_contig112735.2646.1|Name=mRNA_M-pyrifera_M_contig112735.2646.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig112735:198..581+ (Macrocystis pyrifera P11B4 male)
CTGACAGCGGGTCCAGACCTGGTGGTGGACACCGTGAAGGACATCCGCGA CACAGAGGAGGTGTGCAAGGCCCTGCGCAGCGCAATCGCGGCGAAGCAGT ACGGAAGGGAGGACCTGCTGGCGCCGCTGGTGGCGAAGGCGTGCATCAGC ATCCTGCCCGAGAACCCGCTGGCCTTCAGCGTGGACAGCGTGCGCGTGTG CAAGGTGATGGGCGGCGGCGTGGACGACACGAAGGTCTTCAAGGGCTTCG CCCTGCCCAAGGACTCTGCCGGCACCGTCAAGCACGTGAAGAACGCCAAG GTGCTCGTGCTCGCCAGCGGCCTCGAGGCCTCGCAGACAGAGACATCGAG CACGGTGCTCATGACCAGCGCCGACGAGCTGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112735:198..581+

>mRNA_M-pyrifera_M_contig112735.2646.1 ID=mRNA_M-pyrifera_M_contig112735.2646.1|Name=mRNA_M-pyrifera_M_contig112735.2646.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig112735:198..581+ (Macrocystis pyrifera P11B4 male)
CTGACAGCGGGTCCAGACCTGGTGGTGGACACCGTGAAGGACATCCGCGA
CACAGAGGAGGTGTGCAAGGCCCTGCGCAGCGCAATCGCGGCGAAGCAGT
ACGGAAGGGAGGACCTGCTGGCGCCGCTGGTGGCGAAGGCGTGCATCAGC
ATCCTGCCCGAGAACCCGCTGGCCTTCAGCGTGGACAGCGTGCGCGTGTG
CAAGGTGATGGGCGGCGGCGTGGACGACACGAAGGTCTTCAAGGGCTTCG
CCCTGCCCAAGGACTCTGCCGGCACCGTCAAGCACGTGAAGAACGCCAAG
GTGCTCGTGCTCGCCAGCGGCCTCGAGGCCTCGCAGACAGAGACATCGAG
CACGGTGCTCATGACCAGCGCCGACGAGCTGATGCTGACAGCGGGTCCAG
ACCTGGTGGTGGACACCGTGAAGGACATCCGCGACACAGAGGAGGTGTGC
AAGGCCCTGCGCAGCGCAATCGCGGCGAAGCAGTACGGAAGGGAGGACCT
GCTGGCGCCGCTGGTGGCGAAGGCGTGCATCAGCATCCTGCCCGAGAACC
CGCTGGCCTTCAGCGTGGACAGCGTGCGCGTGTGCAAGGTGATGGGCGGC
GGCGTGGACGACACGAAGGTCTTCAAGGGCTTCGCCCTGCCCAAGGACTC
TGCCGGCACCGTCAAGCACGTGAAGAACGCCAAGGTGCTCGTGCTCGCCA
GCGGCCTCGAGGCCTCGCAGACAGAGACATCGAGCACGGTGCTCATGACC
AGCGCCGACGAGCTGATG
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