mRNA_M-pyrifera_M_contig112718.2643.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112718.2643.1
Unique NamemRNA_M-pyrifera_M_contig112718.2643.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Match: A0A3D5DCZ3_9GAMM (Enoyl-CoA hydratase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCZ3_9GAMM)

HSP 1 Score: 226 bits (575), Expect = 2.270e-72
Identity = 111/136 (81.62%), Postives = 119/136 (87.50%), Query Frame = 1
Query:    4 KPEVVKLDLVEDHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIRVAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN 411
            K EVV++D+VED+IALV+ ANPPVNAHSQQLLEEVAWTFDT+SDRDDIRV V TG+GKCFCAGADIKER     G GDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGG ALAA CD  +ASE G LG PEIN
Sbjct:    2 KLEVVRVDIVEDYIALVQLANPPVNAHSQQLLEEVAWTFDTVSDRDDIRVVVFTGEGKCFCAGADIKERVAKTHGDGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGLALAASCDMLLASEKGCLGLPEIN 137          
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Match: A0A2E2BA08_9GAMM (Enoyl-CoA hydratase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E2BA08_9GAMM)

HSP 1 Score: 199 bits (506), Expect = 6.650e-62
Identity = 101/134 (75.37%), Postives = 110/134 (82.09%), Query Frame = 1
Query:   10 EVVKLDLVEDHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIRVAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN 411
            +VVK +LVED +ALV  ANPPVNAHSQQLL EVA TFD +SDR D+RVA+LTG+GKCFCAGADIKER      PGDHWQNSRRAREAYHSIMECQ PVI A+NG ALGGG ALAA CD  +ASE G LG PEIN
Sbjct:    4 QVVKTELVEDGVALVTLANPPVNAHSQQLLSEVASTFDQLSDRADVRVAILTGEGKCFCAGADIKERMATVPEPGDHWQNSRRAREAYHSIMECQVPVIGALNGVALGGGLALAASCDILLASELGCLGLPEIN 137          
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Match: A0A2E5MBG7_9GAMM (Enoyl-CoA hydratase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5MBG7_9GAMM)

HSP 1 Score: 193 bits (491), Expect = 1.240e-59
Identity = 96/135 (71.11%), Postives = 108/135 (80.00%), Query Frame = 1
Query:    7 PEVVKLDLVEDHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIRVAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN 411
            PEVVK +LVE  +A+V   NPPVNAHS Q+LEEVAW+FD +SDRDD+RVA+LTG G+ FCAGADIK R+G     GDHWQ+SR AREAYHSI ECQKPVI A+NGPALGGG A AA CD  IASEN  LG PEIN
Sbjct:    3 PEVVKTELVEAGVAVVTIDNPPVNAHSGQVLEEVAWSFDAVSDRDDVRVAILTGAGRVFCAGADIKNRSGRAPRVGDHWQSSRAAREAYHSIRECQKPVIGALNGPALGGGLAFAASCDMLIASENACLGLPEIN 137          
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Match: A0A523FQS2_9PROT (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FQS2_9PROT)

HSP 1 Score: 177 bits (448), Expect = 4.370e-53
Identity = 86/134 (64.18%), Postives = 104/134 (77.61%), Query Frame = 1
Query:   10 EVVKLDLVEDHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIRVAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN 411
            E VK ++VEDHIA+V+  NPPVNAHS Q+L+++  T D +SD D++R  +LTG+GK FCAGADIK RAGAK   G HWQ+SR+AREAYHSI EC KPVI A+NG ALGGG A+AA CD  IASE   LG PEI+
Sbjct:    7 ETVKCEIVEDHIAIVKLDNPPVNAHSMQMLDDLTLTMDRLSDIDEVRAVILTGEGKVFCAGADIKGRAGAKPQKGAHWQSSRKAREAYHSIRECTKPVIGALNGAALGGGQAMAASCDILIASEKACLGLPEID 140          
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Match: A0A6A7KRJ0_9PROT (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KRJ0_9PROT)

HSP 1 Score: 169 bits (428), Expect = 4.100e-50
Identity = 81/127 (63.78%), Postives = 99/127 (77.95%), Query Frame = 1
Query:   31 VEDHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIRVAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN 411
            + DHIA+V    PPVNA + Q+  ++A  FDTISDRDD+RVA+LTG GKCF AGADIK+R G +R PGD WQ++RR REA+H+I+ECQKPVI AINGPALG G A+AA CD  IA+E   +G PEIN
Sbjct:   10 IADHIAVVTMDRPPVNAQNAQMNTDMAQVFDTISDRDDVRVAILTGAGKCFSAGADIKDRVGKERAPGDAWQHNRRVREAFHAIVECQKPVIGAINGPALGAGLAVAASCDILIAAEEAAIGLPEIN 136          
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Match: W4LWS5_9BACT (Enoyl-CoA hydratase n=2 Tax=Candidatus Entotheonella TaxID=93171 RepID=W4LWS5_9BACT)

HSP 1 Score: 168 bits (426), Expect = 8.230e-50
Identity = 88/134 (65.67%), Postives = 104/134 (77.61%), Query Frame = 1
Query:   10 EVVKLDLVEDHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIRVAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN 411
            EV++ + V D+IA V    PPVNA SQ+  EE+   FDTISDRDD+RVAVLTG GK FCAGADIK RAG++R PGD WQ+SRRAREA+H+I+EC+ PVI AING ALG G A+AA CD  IA+EN  LG PEIN
Sbjct:    4 EVIRCE-VSDYIARVTMDRPPVNALSQEFQEEIMLVFDTISDRDDVRVAVLTGAGKHFCAGADIKSRAGSERQPGDGWQHSRRAREAFHAIVECKVPVIGAINGSALGAGLAIAASCDILIAAENCSLGLPEIN 136          
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Match: A0A2E9Y3G0_9PROT (Enoyl-CoA hydratase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9Y3G0_9PROT)

HSP 1 Score: 162 bits (409), Expect = 3.030e-47
Identity = 83/136 (61.03%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    4 KPEVVKLDLVEDHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIRVAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN 411
            K E+++ ++  DHIALV   NPPVNA  Q+  EE+   FDTISD DD+RVAVLTG GK F AGA+IK +AG +R PGD W ++RRARE +HSIMEC+KPVI A+NG ALG G A+AA CD  IASE   LG PEI+
Sbjct:    2 KTEIIRCEIA-DHIALVTMDNPPVNAQDQKFHEEMMLVFDTISDMDDVRVAVLTGAGKTFSAGANIKNKAGEERQPGDAWAHNRRARECFHSIMECRKPVIGALNGAALGAGLAVAASCDILIASEKASLGLPEID 136          
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Match: A0A1T4LE45_9HYPH (Enoyl-CoA hydratase/carnithine racemase n=5 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1T4LE45_9HYPH)

HSP 1 Score: 160 bits (405), Expect = 1.250e-46
Identity = 76/127 (59.84%), Postives = 95/127 (74.80%), Query Frame = 1
Query:   31 VEDHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIRVAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN 411
            + DH+ALV   NPPVNA +    +E+   FD +SD D++RVAVLTG GKCFCAG DI+ RAG +RGPGD WQ  R ARE +H+I+EC+KPVIAAINGPALG G A+AA CD  +A E+  +G PEI+
Sbjct:   11 IADHVALVTMDNPPVNAQNAAFQDEMIHVFDRLSDIDEVRVAVLTGRGKCFCAGVDIRARAGQQRGPGDAWQGMRYARECFHAILECRKPVIAAINGPALGAGLAVAASCDILVAGESASVGLPEID 137          
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Match: A0A2E5L4E6_9PROT (Enoyl-CoA hydratase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5L4E6_9PROT)

HSP 1 Score: 159 bits (402), Expect = 3.850e-46
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    7 PEVVKLDLVE----DHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIRVAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN 411
            P++  L+ V+    +HIA+V   NPPVNA ++Q  EE+   FD +SDR+D+R  VLTG GKCF AGADIK+RA  K   G HW +SRR RE +HSIMEC KPVIAAINGPALG G A+AA  D  +AS+N  +G PEIN
Sbjct:    2 PDISNLETVDVSISEHIAVVTMNNPPVNAQNKQFHEELTLVFDVLSDREDVRAVVLTGAGKCFSAGADIKDRANRKSELGGHWSHSRRVRECFHSIMECNKPVIAAINGPALGAGLAVAASADILLASDNASIGLPEIN 140          
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Match: A0A2E3KBC3_9PROT (Enoyl-CoA hydratase n=5 Tax=cellular organisms TaxID=131567 RepID=A0A2E3KBC3_9PROT)

HSP 1 Score: 155 bits (393), Expect = 8.760e-45
Identity = 75/127 (59.06%), Postives = 94/127 (74.02%), Query Frame = 1
Query:   31 VEDHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIRVAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKPVIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN 411
            + D +A+V   NPPVNA ++Q  E++   FD +SDR+D+R  +LTG GKCF AGADIK RAG K+  GDHW +SRR RE ++SIMEC+KPVIAAINGPALG G A+AA  D  +ASE   +G PEIN
Sbjct:   14 ISDFVAVVTMNNPPVNAQNRQFHEDLTLVFDVLSDREDVRAVILTGAGKCFSAGADIKGRAGQKKELGDHWSHSRRVRECFYSIMECKKPVIAAINGPALGAGLAVAASADILLASEEASVGLPEIN 140          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112718.2643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DCZ3_9GAMM2.270e-7281.62Enoyl-CoA hydratase n=1 Tax=Gammaproteobacteria ba... [more]
A0A2E2BA08_9GAMM6.650e-6275.37Enoyl-CoA hydratase n=3 Tax=Gammaproteobacteria Ta... [more]
A0A2E5MBG7_9GAMM1.240e-5971.11Enoyl-CoA hydratase n=1 Tax=Gammaproteobacteria ba... [more]
A0A523FQS2_9PROT4.370e-5364.18Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A6A7KRJ0_9PROT4.100e-5063.78Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
W4LWS5_9BACT8.230e-5065.67Enoyl-CoA hydratase n=2 Tax=Candidatus Entotheonel... [more]
A0A2E9Y3G0_9PROT3.030e-4761.03Enoyl-CoA hydratase n=1 Tax=Rhodospirillaceae bact... [more]
A0A1T4LE45_9HYPH1.250e-4659.84Enoyl-CoA hydratase/carnithine racemase n=5 Tax=Hy... [more]
A0A2E5L4E6_9PROT3.850e-4657.55Enoyl-CoA hydratase n=1 Tax=Rhodospirillaceae bact... [more]
A0A2E3KBC3_9PROT8.760e-4559.06Enoyl-CoA hydratase n=5 Tax=cellular organisms Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112718contigM-pyrifera_M_contig112718:10..420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score167.2
Seed ortholog evalue5.5e-39
Seed eggNOG ortholog1205680.CAKO01000007_gene4362
KEGG rclassRC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115
KEGG koko:K01692
KEGG ReactionR03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093
KEGG Pathwayko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212
KEGG ModuleM00032,M00087
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Enoyl-CoA hydratase
EggNOG OGs1PSRK@1224,2U22I@28211,COG1024@1,COG1024@2
EC4.2.1.17
COG Functional cat.I
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.7318618-CDS-M-pyrifera_M_contig112718:9..4201622815640.7318618-CDS-M-pyrifera_M_contig112718:9..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112718 10..420 -
1692277500.6911478-CDS-M-pyrifera_M_contig112718:9..4201692277500.6911478-CDS-M-pyrifera_M_contig112718:9..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112718 10..420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112718.2643.1prot_M-pyrifera_M_contig112718.2643.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112718 10..420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112718.2643.1

>prot_M-pyrifera_M_contig112718.2643.1 ID=prot_M-pyrifera_M_contig112718.2643.1|Name=mRNA_M-pyrifera_M_contig112718.2643.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
VKPEVVKLDLVEDHIALVRFANPPVNAHSQQLLEEVAWTFDTISDRDDIR
VAVLTGDGKCFCAGADIKERAGAKRGPGDHWQNSRRAREAYHSIMECQKP
VIAAINGPALGGGPALAAPCDTPIASENGPLGRPEIN
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mRNA from alignment at M-pyrifera_M_contig112718:10..420-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112718.2643.1 ID=mRNA_M-pyrifera_M_contig112718.2643.1|Name=mRNA_M-pyrifera_M_contig112718.2643.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig112718:10..420- (Macrocystis pyrifera P11B4 male)
GTGAAACCCGAAGTCGTTAAACTTGATCTCGTCGAGGATCACATCGCGCT CGTCCGCTTCGCCAATCCGCCGGTGAATGCGCACTCGCAACAACTACTCG AAGAAGTCGCGTGGACGTTCGATACGATCAGCGATCGCGACGACATCCGC GTCGCCGTACTCACGGGCGACGGCAAGTGTTTCTGCGCCGGTGCCGACAT CAAGGAACGCGCGGGCGCGAAACGCGGGCCCGGCGACCACTGGCAGAATT CGCGCCGCGCGCGCGAAGCCTATCACAGCATCATGGAATGCCAGAAACCC GTCATTGCTGCGATCAACGGGCCCGCGCTCGGCGGTGGGCCCGCGCTCGC GGCGCCGTGCGATACCCCCATTGCGAGCGAAAACGGGCCCCTCGGCCGCC CGGAAATCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112718:10..420-

>mRNA_M-pyrifera_M_contig112718.2643.1 ID=mRNA_M-pyrifera_M_contig112718.2643.1|Name=mRNA_M-pyrifera_M_contig112718.2643.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig112718:10..420- (Macrocystis pyrifera P11B4 male)
GTGAAACCCGAAGTCGTTAAACTTGATCTCGTCGAGGATCACATCGCGCT
CGTCCGCTTCGCCAATCCGCCGGTGAATGCGCACTCGCAACAACTACTCG
AAGAAGTCGCGTGGACGTTCGATACGATCAGCGATCGCGACGACATCCGC
GTCGCCGTACTCACGGGCGACGGCAAGTGTTTCTGCGCCGGTGCCGACAT
CAAGGAACGCGCGGGCGCGAAACGCGGGCCCGGCGACCACTGGCAGAATT
CGCGCCGCGCGCGCGAAGCCTATCACAGCATCATGGAATGCCAGAAACCC
GTCATTGCTGCGATCAACGGGCCCGCGCTCGGCGGTGGGCCCGCGCTCGC
GGCGCCGTGCGATACCCCCATTGCGAGCGAAAACGGGCCCCTCGGCCGCC
CGGAAATCAACGTGAAACCCGAAGTCGTTAAACTTGATCTCGTCGAGGAT
CACATCGCGCTCGTCCGCTTCGCCAATCCGCCGGTGAATGCGCACTCGCA
ACAACTACTCGAAGAAGTCGCGTGGACGTTCGATACGATCAGCGATCGCG
ACGACATCCGCGTCGCCGTACTCACGGGCGACGGCAAGTGTTTCTGCGCC
GGTGCCGACATCAAGGAACGCGCGGGCGCGAAACGCGGGCCCGGCGACCA
CTGGCAGAATTCGCGCCGCGCGCGCGAAGCCTATCACAGCATCATGGAAT
GCCAGAAACCCGTCATTGCTGCGATCAACGGGCCCGCGCTCGGCGGTGGG
CCCGCGCTCGCGGCGCCGTGCGATACCCCCATTGCGAGCGAAAACGGGCC
CCTCGGCCGCCCGGAAATCAAC
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