mRNA_M-pyrifera_M_contig112715.2641.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112715.2641.1
Unique NamemRNA_M-pyrifera_M_contig112715.2641.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Match: A0A6N7FI73_9ACTN (Hydantoinase/oxoprolinase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FI73_9ACTN)

HSP 1 Score: 181 bits (458), Expect = 1.580e-50
Identity = 95/155 (61.29%), Postives = 109/155 (70.32%), Query Frame = 1
Query:    1 IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAALVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFRDALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLHQVDAA 465
            I VDVGGTFTDL ++ V G               KVPSVP+DPS GV AAL   AD++G  ++ L+G C  FVHGSTVATN +LE K A VGLLTT GFRDALEIRRG R DQWDHRAP+PPV+VPR LR G+GGR+D  G E+EPLD   V AA
Sbjct:   15 IGVDVGGTFTDLALADVSG----------SLWVAKVPSVPADPSRGVLAALERLADEVGGSVDGLLGGCGLFVHGSTVATNTLLEGKGARVGLLTTRGFRDALEIRRGLREDQWDHRAPYPPVLVPRYLRQGVGGRLDRDGAELEPLDTADVTAA 159          
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Match: A0A520NUW9_9PROT (Hydantoinase/oxoprolinase family protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NUW9_9PROT)

HSP 1 Score: 180 bits (457), Expect = 1.930e-50
Identity = 94/155 (60.65%), Postives = 111/155 (71.61%), Query Frame = 1
Query:    1 IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAALVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFRDALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLHQVDAA 465
            + VDVGGTFTDLVV+      +GRT         KVPSVP+DP  GV  AL TA + LG+P+E  +G C  F+HGSTVATN +LE K A VGLLTTAGFRD+LE RRG R D WDHR P+PPV+VPR LR  +GGRIDARG E+EP++L  V AA
Sbjct:    8 VGVDVGGTFTDLVVAD----SEGRT------DVFKVPSVPADPGEGVINALTTACEALGQPMEKFLGDCQFFLHGSTVATNTLLEGKGATVGLLTTAGFRDSLEARRGLRKDPWDHRTPYPPVLVPRYLRQPVGGRIDARGNEVEPVNLDDVRAA 152          
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Match: A0A2D8G381_9PROT (5-oxoprolinase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G381_9PROT)

HSP 1 Score: 175 bits (444), Expect = 1.370e-48
Identity = 91/155 (58.71%), Postives = 107/155 (69.03%), Query Frame = 1
Query:    1 IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAALVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFRDALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLHQVDAA 465
            + VDVGGTFTDLVV+      DGRT         KVPSVP+DP  GV  AL+TA   L +PIE  +G C  F+HGSTVATN +LE K A VGLLTT GFRD+LE RRG R D WDHR P+PPV++PR  R  +GGRIDA+G EIEP++L  V  A
Sbjct:    8 VGVDVGGTFTDLVVAD----SDGRT------EVYKVPSVPADPGEGVIDALLTACASLNQPIEKFLGNCQFFLHGSTVATNTLLEGKGAVVGLLTTTGFRDSLEARRGLRKDPWDHRTPYPPVLIPRYXRLPVGGRIDAKGNEIEPVNLDDVRXA 152          
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Match: A0A2E8GE43_9ACTN (5-oxoprolinase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8GE43_9ACTN)

HSP 1 Score: 162 bits (411), Expect = 1.660e-47
Identity = 87/152 (57.24%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAALVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFRDALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLHQV 456
            I VDVGGTFTDLV++       G+T         KVPSVPSDPS GV AA+   A  LG P  +++ +C+ FVHGST+ATN +LE K A VGL+TT GFRD +EIRRG R DQW+HRAP+ PV+VPR LR  I GRIDA G+E +PLD   V
Sbjct:   20 IGVDVGGTFTDLVLAD----SRGKT------WVAKVPSVPSDPSQGVLAAVQRIAVDLGLPKSEVLSQCSLFVHGSTIATNTMLEGKAASVGLITTEGFRDTIEIRRGLRSDQWNHRAPYAPVLVPRYLRRSIPGRIDADGSEHQPLDTSSV 161          
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Match: A0A2E5KVN3_9PROT (5-oxoprolinase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E5KVN3_9PROT)

HSP 1 Score: 172 bits (436), Expect = 2.130e-47
Identity = 90/155 (58.06%), Postives = 105/155 (67.74%), Query Frame = 1
Query:    1 IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAALVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFRDALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLHQVDAA 465
            I VDVGGTFTD+V++   G            HT KVPSVP+DPS GV   L TAAD    P+  L+G C  FVHGSTVATN +LE K A VGL+TT GFRD+LEIRRG R +QWDHR P+PPV+VPR LR  +GGRID  G EIEP     ++AA
Sbjct:   17 IGVDVGGTFTDMVLADANGT----------IHTFKVPSVPADPSEGVVRVLQTAADAWQLPLGSLLGDCNLFVHGSTVATNTMLEGKGATVGLITTRGFRDSLEIRRGFRENQWDHRRPFPPVLVPRYLRLPVGGRIDRNGDEIEPFVPEDLEAA 161          
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Match: UPI00048C84AB (hydantoinase/oxoprolinase family protein n=2 Tax=Nisaea TaxID=390876 RepID=UPI00048C84AB)

HSP 1 Score: 169 bits (429), Expect = 1.930e-46
Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 1
Query:    1 IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAALVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFRDALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLHQV 456
            I VDVGGTFTD+VV+   G            H  KVPSVPSDP+ GV  A+  AA+ +G   +D +G+C+ F HGSTVATN +LERK   VGLLTT GFRD+LEIRRG R + WDHR P+P V+VPR LR  + GR+D  G E+EPLDL QV
Sbjct:   10 IGVDVGGTFTDMVVAGADGA----------LHVFKVPSVPSDPARGVMNAVAKAANDMGLSQDDFLGQCSFFAHGSTVATNTLLERKGVRVGLLTTEGFRDSLEIRRGIRTNPWDHRTPYPEVLVPRYLRRPVAGRLDTHGQELEPLDLDQV 151          
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Match: A0A2E5I2A2_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A2E5I2A2_9ACTN)

HSP 1 Score: 171 bits (433), Expect = 1.990e-46
Identity = 91/152 (59.87%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAALVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFRDALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLHQV 456
            I VDVGGTFTDLV++   G           A   KVPSVPSDPS GV AA+   A  LG P  +L+ +C+ FVHGST+ATN +LE K A VGL+TT GFRD LEIRRG R DQWDHRAP+PPV+VPR LR  I GRIDA G+E +PLD   V
Sbjct:   20 IGVDVGGTFTDLVLADSRGK----------AWVAKVPSVPSDPSRGVIAAVQRIAVDLGLPKSELLNQCSLFVHGSTIATNTMLEGKAATVGLITTEGFRDTLEIRRGLRSDQWDHRAPYPPVLVPRHLRRSIPGRIDADGSEHQPLDTSSV 161          
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Match: UPI001868F4FB (hydantoinase/oxoprolinase family protein n=1 Tax=Nisaea sediminum TaxID=2775867 RepID=UPI001868F4FB)

HSP 1 Score: 169 bits (428), Expect = 2.670e-46
Identity = 88/152 (57.89%), Postives = 103/152 (67.76%), Query Frame = 1
Query:    1 IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAALVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFRDALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLHQV 456
            I VDVGGTFTD+VV+   G            H  KVPSVPSDP+ GV  A+  AA  LG    D +GRC+ F HGSTVATN +LERK A VG+LTT GFRD+LEIRRG R + WDHR P+P V+VPR LR  + GR+D  G E+EPLDL QV
Sbjct:   10 IGVDVGGTFTDMVVAGADGA----------LHVFKVPSVPSDPAKGVMNAVAKAAADLGLSEADFLGRCSFFAHGSTVATNTLLERKGARVGMLTTEGFRDSLEIRRGIRPNPWDHRTPYPEVLVPRYLRRPVAGRLDTHGRELEPLDLGQV 151          
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Match: A0A2D7UTK4_9ACTN (5-oxoprolinase (Fragment) n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D7UTK4_9ACTN)

HSP 1 Score: 166 bits (419), Expect = 2.200e-45
Identity = 87/152 (57.24%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAALVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFRDALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLHQV 456
            I VDVGGTFTDLV++   G           A   KVPSVPSDPSAGV +A+   A  LG P  +++ +C+ FVHGST+ATN +LE K A VGL+TT GFRD +EIRRG R DQW+HR P+ PV+VPR LR  + GRIDA G+E EPLDL  V
Sbjct:   20 IGVDVGGTFTDLVLADANGQ----------AWVAKVPSVPSDPSAGVLSAVQRIAVDLGLPKSEILSQCSLFVHGSTIATNTMLEGKGAKVGLITTEGFRDTIEIRRGLRSDQWNHREPYAPVLVPRYLRRSVAGRIDADGSEHEPLDLSPV 161          
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Match: A0A5C5T6N7_9HYPH (Hydantoinase/oxoprolinase family protein n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5T6N7_9HYPH)

HSP 1 Score: 166 bits (419), Expect = 4.690e-45
Identity = 89/155 (57.42%), Postives = 105/155 (67.74%), Query Frame = 1
Query:    1 IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAALVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFRDALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLHQVDAA 465
            + VDVGGTFTDLVV  V    DGR          KVPSVP+DPS GV  A+  AA Q+G  + D +  C  FVHGSTVATN +LE K A VGLLTT GFRD+LEIRRG R + WDHR P+PPV+VPR LR  + GRI A G+EI P+++  V AA
Sbjct:    7 VGVDVGGTFTDLVVQDV----DGR------MAVAKVPSVPADPSRGVLDAVTAAASQVGLTVADFLRGCAGFVHGSTVATNTILEGKGARVGLLTTEGFRDSLEIRRGLRENTWDHRTPFPPVLVPRYLRLPVRGRIAADGSEIAPVEIADVHAA 151          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112715.2641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7FI73_9ACTN1.580e-5061.29Hydantoinase/oxoprolinase family protein n=1 Tax=A... [more]
A0A520NUW9_9PROT1.930e-5060.65Hydantoinase/oxoprolinase family protein n=1 Tax=R... [more]
A0A2D8G381_9PROT1.370e-4858.715-oxoprolinase n=1 Tax=Alphaproteobacteria bacteri... [more]
A0A2E8GE43_9ACTN1.660e-4757.245-oxoprolinase (Fragment) n=1 Tax=Acidimicrobiacea... [more]
A0A2E5KVN3_9PROT2.130e-4758.065-oxoprolinase n=2 Tax=Proteobacteria TaxID=1224 R... [more]
UPI00048C84AB1.930e-4656.58hydantoinase/oxoprolinase family protein n=2 Tax=N... [more]
A0A2E5I2A2_9ACTN1.990e-4659.87Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
UPI001868F4FB2.670e-4657.89hydantoinase/oxoprolinase family protein n=1 Tax=N... [more]
A0A2D7UTK4_9ACTN2.200e-4557.245-oxoprolinase (Fragment) n=3 Tax=Acidimicrobiacea... [more]
A0A5C5T6N7_9HYPH4.690e-4557.42Hydantoinase/oxoprolinase family protein n=1 Tax=R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112715contigM-pyrifera_M_contig112715:89..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score153.7
Seed ortholog evalue7.1e-35
Seed eggNOG ortholog1205680.CAKO01000002_gene2781
Preferred nameoplaH
KEGG rclassRC00553,RC00632
KEGG koko:K01469,ko:K01473
KEGG ReactionR00251,R03187
KEGG Pathwayko00330,ko00480,ko01100,map00330,map00480,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Hydantoinase/oxoprolinase
EggNOG OGs1MU2Y@1224,2JQSU@204441,2TQZ6@28211,COG0145@1,COG0145@2
EC3.5.2.14,3.5.2.9
COG Functional cat.EQ
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.6383834-CDS-M-pyrifera_M_contig112715:88..5531622815640.6383834-CDS-M-pyrifera_M_contig112715:88..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112715 89..553 +
1692277500.6560314-CDS-M-pyrifera_M_contig112715:88..5531692277500.6560314-CDS-M-pyrifera_M_contig112715:88..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112715 89..553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112715.2641.1prot_M-pyrifera_M_contig112715.2641.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112715 89..553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112715.2641.1

>prot_M-pyrifera_M_contig112715.2641.1 ID=prot_M-pyrifera_M_contig112715.2641.1|Name=mRNA_M-pyrifera_M_contig112715.2641.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
IAVDVGGTFTDLVVSSVPGVDDGRTPQTPFAHTVKVPSVPSDPSAGVAAA
LVTAADQLGRPIEDLVGRCTRFVHGSTVATNAVLERKLAPVGLLTTAGFR
DALEIRRGRRVDQWDHRAPWPPVIVPRSLRFGIGGRIDARGTEIEPLDLH
QVDAA
back to top

mRNA from alignment at M-pyrifera_M_contig112715:89..553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112715.2641.1 ID=mRNA_M-pyrifera_M_contig112715.2641.1|Name=mRNA_M-pyrifera_M_contig112715.2641.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig112715:89..553+ (Macrocystis pyrifera P11B4 male)
ATCGCCGTCGATGTCGGTGGGACGTTCACCGATCTCGTCGTCAGCTCCGT CCCCGGCGTCGACGATGGCCGCACCCCGCAGACACCGTTCGCCCACACCG TGAAGGTCCCCTCGGTCCCGAGCGATCCGTCGGCCGGCGTGGCGGCCGCG TTGGTCACGGCTGCCGACCAGCTGGGCCGACCGATCGAAGACCTCGTCGG ACGCTGCACGCGCTTCGTCCACGGATCGACCGTGGCCACCAACGCCGTGC TCGAACGAAAACTCGCACCTGTCGGCCTGCTCACCACGGCGGGCTTCCGT GACGCACTCGAGATCCGGCGGGGGCGCCGTGTCGACCAGTGGGACCATCG AGCCCCATGGCCGCCGGTGATCGTTCCCCGTTCGCTTCGATTCGGCATCG GGGGCCGCATCGACGCGCGCGGAACCGAGATCGAGCCGCTCGACCTACAT CAGGTCGATGCGGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112715:89..553+

>mRNA_M-pyrifera_M_contig112715.2641.1 ID=mRNA_M-pyrifera_M_contig112715.2641.1|Name=mRNA_M-pyrifera_M_contig112715.2641.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig112715:89..553+ (Macrocystis pyrifera P11B4 male)
ATCGCCGTCGATGTCGGTGGGACGTTCACCGATCTCGTCGTCAGCTCCGT
CCCCGGCGTCGACGATGGCCGCACCCCGCAGACACCGTTCGCCCACACCG
TGAAGGTCCCCTCGGTCCCGAGCGATCCGTCGGCCGGCGTGGCGGCCGCG
TTGGTCACGGCTGCCGACCAGCTGGGCCGACCGATCGAAGACCTCGTCGG
ACGCTGCACGCGCTTCGTCCACGGATCGACCGTGGCCACCAACGCCGTGC
TCGAACGAAAACTCGCACCTGTCGGCCTGCTCACCACGGCGGGCTTCCGT
GACGCACTCGAGATCCGGCGGGGGCGCCGTGTCGACCAGTGGGACCATCG
AGCCCCATGGCCGCCGGTGATCGTTCCCCGTTCGCTTCGATTCGGCATCG
GGGGCCGCATCGACGCGCGCGGAACCGAGATCGAGCCGCTCGACCTACAT
CAGGTCGATGCGGCCATCGCCGTCGATGTCGGTGGGACGTTCACCGATCT
CGTCGTCAGCTCCGTCCCCGGCGTCGACGATGGCCGCACCCCGCAGACAC
CGTTCGCCCACACCGTGAAGGTCCCCTCGGTCCCGAGCGATCCGTCGGCC
GGCGTGGCGGCCGCGTTGGTCACGGCTGCCGACCAGCTGGGCCGACCGAT
CGAAGACCTCGTCGGACGCTGCACGCGCTTCGTCCACGGATCGACCGTGG
CCACCAACGCCGTGCTCGAACGAAAACTCGCACCTGTCGGCCTGCTCACC
ACGGCGGGCTTCCGTGACGCACTCGAGATCCGGCGGGGGCGCCGTGTCGA
CCAGTGGGACCATCGAGCCCCATGGCCGCCGGTGATCGTTCCCCGTTCGC
TTCGATTCGGCATCGGGGGCCGCATCGACGCGCGCGGAACCGAGATCGAG
CCGCTCGACCTACATCAGGTCGATGCGGCC
back to top