mRNA_M-pyrifera_M_contig112711.2640.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112711.2640.1
Unique NamemRNA_M-pyrifera_M_contig112711.2640.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Match: A0A7S4MNV0_9EUKA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MNV0_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 1.250e-26
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 GGFFHNPKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCFNKRKFMNLA 177
            GGFFHNPKGR EADT RAYFTQM QELG RLI  VY     APSKWW CFNKRKFMNLA
Sbjct:  114 GGFFHNPKGRQEADTVRAYFTQMRQELGVRLIELVYKNNPNAPSKWWTCFNKRKFMNLA 172
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BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Match: A0A2P6NG12_9EUKA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NG12_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 3.840e-20
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 GGFFHNPKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCFNKRKFMN 171
            GG   NP  R E DT R Y TQ+ QE GQRL+ +VYA GD AP KWWMCFNKRKF+N
Sbjct:  113 GGIVTNPANRGETDTIRQYLTQIRQETGQRLLQKVYANGDAAPDKWWMCFNKRKFLN 169
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BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Match: L8HDC1_ACACA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDC1_ACACA)

HSP 1 Score: 83.2 bits (204), Expect = 9.280e-19
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 GFFHNPKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCFNKRKFMN 171
            GF  NP  RAEAD  R Y TQ+ QE G RLI  VYA G+  PSKWWMCF+KRKF+N
Sbjct:  102 GFVSNPANRAEADQIRQYLTQLRQETGDRLIEAVYAFGENEPSKWWMCFSKRKFLN 157
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BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Match: A0A0L0DQL6_THETB (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DQL6_THETB)

HSP 1 Score: 80.9 bits (198), Expect = 2.190e-17
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 GGFFHNPKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCFNKRKFMNLA 177
            GGFF  P+ RAEAD  RAYFTQ+ QELG RL+  VY       SKWWMCF  RKF+N+A
Sbjct:  151 GGFFSAPESRAEADEIRAYFTQLRQELGIRLVDLVYPDETSPASKWWMCFKSRKFLNIA 209
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BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Match: A0A1X7VJE5_AMPQE (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VJE5_AMPQE)

HSP 1 Score: 78.2 bits (191), Expect = 1.220e-16
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    7 FFHNPKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCFNKRKFMNLA 177
            F   P  RAEAD  R YFTQM QELGQRL+ +V+  GD+ PSKWW+CF KR+FM+ +
Sbjct:  116 FMSKPASRAEADQMRQYFTQMRQELGQRLVEKVFGDGDK-PSKWWICFTKRRFMDKS 171
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BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Match: A0A6A6U253_9PEZI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6U253_9PEZI)

HSP 1 Score: 76.3 bits (186), Expect = 8.730e-16
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   10 FHNPKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCFNKRKFMNLA 177
            F  PK R EA+  R Y  QM QEL QR +ARVYA GD APSKWW+ F KRKFMN+A
Sbjct:  134 FEPPKERNEAEVLRQYMMQMRQELAQRCLARVYADGD-APSKWWLSFKKRKFMNMA 188
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BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Match: A0A7M5WRP1_9CNID (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WRP1_9CNID)

HSP 1 Score: 75.1 bits (183), Expect = 1.140e-15
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   19 PKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCFNKRKFMNLA 177
            PK R EAD  R YFTQ+ QELGQR++ +VY      PSKWWMCF KR+FM+ +
Sbjct:   95 PKDRTEADQTRMYFTQLRQELGQRILDKVYEPNTNKPSKWWMCFVKRRFMDKS 147
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BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Match: A0A6G1GYR8_9PEZI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Aulographum hederae CBS 113979 TaxID=1176131 RepID=A0A6G1GYR8_9PEZI)

HSP 1 Score: 75.1 bits (183), Expect = 2.440e-15
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   10 FHNPKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCFNKRKFMNLA 177
            F  PK R +A+T R Y  QM QELGQRL+ARVY+ GD+ PSKWW+ F KRKFM  +
Sbjct:  134 FEAPKDRQDAETLRQYIMQMRQELGQRLLARVYSEGDK-PSKWWLSFTKRKFMGKS 188
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BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Match: A0A0D1Z9D9_9PEZI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D1Z9D9_9PEZI)

HSP 1 Score: 75.1 bits (183), Expect = 2.490e-15
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   10 FHNPKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCFNKRKFMNLA 177
            F  PK R EA+T R Y  QM QELG RL++RVYA G   PSKWW+ F KRKFM  +
Sbjct:  134 FEGPKDRHEAETLRQYIMQMRQELGARLLSRVYADGTDKPSKWWLSFTKRKFMGKS 189
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BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Match: A0A517L3J6_9PEZI (Actin-related protein 2/3 complex subunit 3 n=3 Tax=Venturia TaxID=5024 RepID=A0A517L3J6_9PEZI)

HSP 1 Score: 74.7 bits (182), Expect = 3.510e-15
Identity = 34/56 (60.71%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   10 FHNPKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCFNKRKFMNLA 177
            F  PK R EA+T R Y  QM QELG RLI RVYA G   PSKWW+ F KRKFM  +
Sbjct:  134 FEGPKDRHEAETLRQYMMQMRQELGARLINRVYADGTDKPSKWWLSFTKRKFMGKS 189
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112711.2640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MNV0_9EUKA1.250e-2679.66Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A2P6NG12_9EUKA3.840e-2064.91Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
L8HDC1_ACACA9.280e-1964.29Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A0L0DQL6_THETB2.190e-1761.02Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A1X7VJE5_AMPQE1.220e-1659.65Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A6A6U253_9PEZI8.730e-1664.29Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A7M5WRP1_9CNID1.140e-1558.49Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A6G1GYR8_9PEZI2.440e-1560.71Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A0D1Z9D9_9PEZI2.490e-1558.93Actin-related protein 2/3 complex subunit 3 n=1 Ta... [more]
A0A517L3J6_9PEZI3.510e-1560.71Actin-related protein 2/3 complex subunit 3 n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112711contigM-pyrifera_M_contig112711:7..186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1e-13
Seed eggNOG ortholog529818.AMSG_10431T0
Preferred nameARPC3
KEGG koko:K05756
KEGG Pathwayko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04144,map04666,map04810,map05100,map05130,map05131,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0000001,GO:0000147,GO:0001667,GO:0002009,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005856,GO:0005884,GO:0005885,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006928,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0010638,GO:0012506,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016477,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030027,GO:0030029,GO:0030036,GO:0030041,GO:0030139,GO:0030175,GO:0030424,GO:0030426,GO:0030427,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031143,GO:0031252,GO:0031334,GO:0031410,GO:0031941,GO:0031982,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032535,GO:0032940,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033267,GO:0034314,GO:0034622,GO:0038093,GO:0038094,GO:0038096,GO:0040011,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0045010,GO:0045335,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051258,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051666,GO:0051674,GO:0051716,GO:0060429,GO:0061024,GO:0061645,GO:0061850,GO:0065003,GO:0065007,GO:0065008,GO:0070358,GO:0071840,GO:0071944,GO:0071963,GO:0090066,GO:0090130,GO:0090132,GO:0090723,GO:0090725,GO:0097435,GO:0097458,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:0098858,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0110053,GO:0120025,GO:0120038,GO:0150034,GO:1902903,GO:1902905
EggNOG free text desc.Arp2/3 complex-mediated actin nucleation
EggNOG OGsKOG3155@1,KOG3155@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.6090348-CDS-M-pyrifera_M_contig112711:6..1861622815640.6090348-CDS-M-pyrifera_M_contig112711:6..186Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112711 7..186 +
1692277500.6444426-CDS-M-pyrifera_M_contig112711:6..1861692277500.6444426-CDS-M-pyrifera_M_contig112711:6..186Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112711 7..186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112711.2640.1prot_M-pyrifera_M_contig112711.2640.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112711 7..186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112711.2640.1

>prot_M-pyrifera_M_contig112711.2640.1 ID=prot_M-pyrifera_M_contig112711.2640.1|Name=mRNA_M-pyrifera_M_contig112711.2640.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
GGFFHNPKGRAEADTCRAYFTQMHQELGQRLIARVYAAGDQAPSKWWMCF
NKRKFMNLA*
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mRNA from alignment at M-pyrifera_M_contig112711:7..186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112711.2640.1 ID=mRNA_M-pyrifera_M_contig112711.2640.1|Name=mRNA_M-pyrifera_M_contig112711.2640.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig112711:7..186+ (Macrocystis pyrifera P11B4 male)
GGTGGATTCTTCCACAACCCCAAGGGCCGCGCGGAGGCTGACACCTGCCG
TGCCTACTTCACACAGATGCACCAGGAGCTCGGCCAGCGCCTCATCGCCC
GCGTCTACGCTGCCGGAGACCAGGCGCCCTCCAAGTGGTGGATGTGCTTC
AACAAGCGCAAGTTCATGAACCTCGCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112711:7..186+

>mRNA_M-pyrifera_M_contig112711.2640.1 ID=mRNA_M-pyrifera_M_contig112711.2640.1|Name=mRNA_M-pyrifera_M_contig112711.2640.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig112711:7..186+ (Macrocystis pyrifera P11B4 male)
GGTGGATTCTTCCACAACCCCAAGGGCCGCGCGGAGGCTGACACCTGCCG
TGCCTACTTCACACAGATGCACCAGGAGCTCGGCCAGCGCCTCATCGCCC
GCGTCTACGCTGCCGGAGACCAGGCGCCCTCCAAGTGGTGGATGTGCTTC
AACAAGCGCAAGTTCATGAACCTCGCCTAAGGTGGATTCTTCCACAACCC
CAAGGGCCGCGCGGAGGCTGACACCTGCCGTGCCTACTTCACACAGATGC
ACCAGGAGCTCGGCCAGCGCCTCATCGCCCGCGTCTACGCTGCCGGAGAC
CAGGCGCCCTCCAAGTGGTGGATGTGCTTCAACAAGCGCAAGTTCATGAA
CCTCGCCTAA
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