mRNA_M-pyrifera_M_contig112630.2636.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112630.2636.1
Unique NamemRNA_M-pyrifera_M_contig112630.2636.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112630.2636.1 vs. uniprot
Match: A0A847Z9M4_9FIRM (Uncharacterized protein n=1 Tax=Eubacteriaceae bacterium TaxID=2049045 RepID=A0A847Z9M4_9FIRM)

HSP 1 Score: 68.6 bits (166), Expect = 2.160e-13
Identity = 34/88 (38.64%), Postives = 43/88 (48.86%), Query Frame = 1
Query:    1 MTEDKDWRL----DILRDETFALRAFKTPPDKPGLDHEHCEACFQKFMDLDREGIDRRGYATADGRSWICEACFADFSERFEWRVDEN 252
            M++  DWRL    +   +       +K P +    DH+HCE CF KF +   EG    GY T D   WICE CF DF + F W V  N
Sbjct:    1 MSDKNDWRLSDHDEFYNNLQLKHAQYKRPSES--WDHDHCEFCFDKFSEY--EGDLHEGYCTLDNYHWICEVCFNDFKDLFNWSVINN 84          
BLAST of mRNA_M-pyrifera_M_contig112630.2636.1 vs. uniprot
Match: A0A4Q7PKL7_9FIRM (Uncharacterized protein n=1 Tax=Cuneatibacter caecimuris TaxID=1796618 RepID=A0A4Q7PKL7_9FIRM)

HSP 1 Score: 64.7 bits (156), Expect = 6.440e-12
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   85 PGLDHEHCEACFQKFMDLDREGIDRRGYATADGRSWICEACFADFSERFEWRVDE 249
            PG DH+HCE C++ F   D  G   +GY T D   WICE C+ DF E FEW++ E
Sbjct:   28 PGNDHDHCEFCWETFSVYD--GDLHKGYCTLDRYKWICEDCYEDFKETFEWKLTE 80          
BLAST of mRNA_M-pyrifera_M_contig112630.2636.1 vs. uniprot
Match: A0A7V6M230_9BACT (Uncharacterized protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7V6M230_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 4.390e-11
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   76 PDKPGLDHEHCEACFQKFMDLDREGIDRRGYATADGRSWICEACFADFSERFEWRVDE 249
            P KPG DH+HC  C   F     EG  ++GY+T D   WIC  C+ DF + FEW++++
Sbjct:   30 PYKPGWDHDHCAFCGDTFSM--NEGDIKQGYSTIDSYYWICNQCYDDFKDEFEWQIED 85          
BLAST of mRNA_M-pyrifera_M_contig112630.2636.1 vs. uniprot
Match: UPI001CA7E704 (hypothetical protein n=1 Tax=Dactylosporangium vinaceum TaxID=53362 RepID=UPI001CA7E704)

HSP 1 Score: 61.6 bits (148), Expect = 1.350e-10
Identity = 32/84 (38.10%), Postives = 45/84 (53.57%), Query Frame = 1
Query:   10 DKDWRLDILRDETFA----LRAFKTPPDKPGLDHEHCEACFQKFMDLDREGID-RRGYATAD-GRSWICEACFADFSERFEWRV 243
            D DWRL  +   T+     LR  +  P +PG  H+HC  C  +   ++ E      GY TAD G +WIC+ CF DF ++F W+V
Sbjct:    3 DGDWRL--MGQHTWLAGRPLRRRQWTPHRPGWGHDHCAFCHAEIAAVETEHASLTSGYVTADDGYTWICQPCFDDFKDKFNWQV 84          
BLAST of mRNA_M-pyrifera_M_contig112630.2636.1 vs. uniprot
Match: A0A3C0NVF8_9PROT (Uncharacterized protein n=1 Tax=Methylophilaceae bacterium TaxID=2030816 RepID=A0A3C0NVF8_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 1.770e-10
Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:   94 DHEHCEACFQKFMDLDREGIDRRGYATADGRSWICEACFADFSERFEWRV 243
            DH+HCE C QK  DLD     + G+   D   WICE+CF +F E ++W++
Sbjct:   36 DHDHCEFCLQKITDLDISDSIKEGWTNQDEGLWICESCFEEFKEMYQWKL 85          
BLAST of mRNA_M-pyrifera_M_contig112630.2636.1 vs. uniprot
Match: UPI0011853479 (hypothetical protein n=1 Tax=Janthinobacterium agaricidamnosum TaxID=55508 RepID=UPI0011853479)

HSP 1 Score: 60.5 bits (145), Expect = 2.850e-10
Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 1
Query:   16 DWRLD----ILRDETFALRAFKTPPDKPGLDHEHCEACFQKFMDLDREGIDRRGYATADGRSWICEACFADFSERFEWR 240
            DWRL      L+      + ++   D  G DH+HCE C +KF  +D       GYAT D   WIC+ CF DF E F+W+
Sbjct:    3 DWRLQGQEKYLKGVVLHKKKYRCYKD--GWDHDHCEFCGEKFS-VDIPDTLYVGYATKDNYHWICDTCFHDFKEMFDWK 78          
BLAST of mRNA_M-pyrifera_M_contig112630.2636.1 vs. uniprot
Match: D2MMS7_9FIRM (Uncharacterized protein n=1 Tax=Bulleidia extructa W1219 TaxID=679192 RepID=D2MMS7_9FIRM)

HSP 1 Score: 60.1 bits (144), Expect = 4.880e-9
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 1
Query:   16 DWRLDILRD----ETFALRAFKTPPDKPGLDHEHCEACFQKFMDLDREGIDRRGYATADGRSWICEACFADFSE 225
            DW LDI+ D    +T+ L         P  DH+HCE CF+K M++D  G ++ GY T D   W+C+ CF+ + +
Sbjct:   16 DWGLDIVLDNIEYKTYYLE--DNLGQYPNFDHDHCELCFEKIMNID--GCEKEGYVTLDFYYWLCKDCFSKYHQ 85          
BLAST of mRNA_M-pyrifera_M_contig112630.2636.1 vs. uniprot
Match: M2BQE5_TREDN (Uncharacterized protein n=2 Tax=Treponema denticola TaxID=158 RepID=M2BQE5_TREDN)

HSP 1 Score: 54.3 bits (129), Expect = 9.090e-7
Identity = 25/52 (48.08%), Postives = 30/52 (57.69%), Query Frame = 1
Query:   97 HEHCEACFQKFMDLDREGIDRRGYATADGRSWICEACFADFSERFEWRVDEN 252
            H+HCE C  KF      G   RGYAT D   WICE CF DF + F ++V +N
Sbjct:  187 HDHCEFCRTKFG---YSGGLERGYATKDRYLWICEKCFEDFKDMFNFKVIQN 235          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112630.2636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A847Z9M4_9FIRM2.160e-1338.64Uncharacterized protein n=1 Tax=Eubacteriaceae bac... [more]
A0A4Q7PKL7_9FIRM6.440e-1249.09Uncharacterized protein n=1 Tax=Cuneatibacter caec... [more]
A0A7V6M230_9BACT4.390e-1143.10Uncharacterized protein n=1 Tax=Bacteroidales bact... [more]
UPI001CA7E7041.350e-1038.10hypothetical protein n=1 Tax=Dactylosporangium vin... [more]
A0A3C0NVF8_9PROT1.770e-1044.00Uncharacterized protein n=1 Tax=Methylophilaceae b... [more]
UPI00118534792.850e-1039.24hypothetical protein n=1 Tax=Janthinobacterium aga... [more]
D2MMS7_9FIRM4.880e-937.84Uncharacterized protein n=1 Tax=Bulleidia extructa... [more]
M2BQE5_TREDN9.090e-748.08Uncharacterized protein n=2 Tax=Treponema denticol... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112630contigM-pyrifera_M_contig112630:277..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.4420266-CDS-M-pyrifera_M_contig112630:276..5311622815640.4420266-CDS-M-pyrifera_M_contig112630:276..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112630 277..531 +
1692277500.5977614-CDS-M-pyrifera_M_contig112630:276..5311692277500.5977614-CDS-M-pyrifera_M_contig112630:276..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112630 277..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112630.2636.1prot_M-pyrifera_M_contig112630.2636.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112630 277..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112630.2636.1

>prot_M-pyrifera_M_contig112630.2636.1 ID=prot_M-pyrifera_M_contig112630.2636.1|Name=mRNA_M-pyrifera_M_contig112630.2636.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MTEDKDWRLDILRDETFALRAFKTPPDKPGLDHEHCEACFQKFMDLDREG
IDRRGYATADGRSWICEACFADFSERFEWRVDEN*
back to top

mRNA from alignment at M-pyrifera_M_contig112630:277..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112630.2636.1 ID=mRNA_M-pyrifera_M_contig112630.2636.1|Name=mRNA_M-pyrifera_M_contig112630.2636.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig112630:277..531+ (Macrocystis pyrifera P11B4 male)
ATGACCGAAGACAAGGACTGGCGCCTCGACATCCTGCGCGACGAGACCTT TGCCCTGCGCGCCTTCAAGACGCCGCCGGACAAGCCGGGGCTGGACCACG AGCACTGCGAGGCGTGCTTCCAGAAGTTCATGGACCTCGACCGCGAAGGC ATCGACCGGCGCGGCTACGCGACTGCGGACGGCCGCTCGTGGATCTGCGA AGCATGCTTCGCGGACTTCTCCGAGCGATTCGAGTGGCGCGTCGACGAGA ACTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112630:277..531+

>mRNA_M-pyrifera_M_contig112630.2636.1 ID=mRNA_M-pyrifera_M_contig112630.2636.1|Name=mRNA_M-pyrifera_M_contig112630.2636.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig112630:277..531+ (Macrocystis pyrifera P11B4 male)
ATGACCGAAGACAAGGACTGGCGCCTCGACATCCTGCGCGACGAGACCTT
TGCCCTGCGCGCCTTCAAGACGCCGCCGGACAAGCCGGGGCTGGACCACG
AGCACTGCGAGGCGTGCTTCCAGAAGTTCATGGACCTCGACCGCGAAGGC
ATCGACCGGCGCGGCTACGCGACTGCGGACGGCCGCTCGTGGATCTGCGA
AGCATGCTTCGCGGACTTCTCCGAGCGATTCGAGTGGCGCGTCGACGAGA
ACTGAATGACCGAAGACAAGGACTGGCGCCTCGACATCCTGCGCGACGAG
ACCTTTGCCCTGCGCGCCTTCAAGACGCCGCCGGACAAGCCGGGGCTGGA
CCACGAGCACTGCGAGGCGTGCTTCCAGAAGTTCATGGACCTCGACCGCG
AAGGCATCGACCGGCGCGGCTACGCGACTGCGGACGGCCGCTCGTGGATC
TGCGAAGCATGCTTCGCGGACTTCTCCGAGCGATTCGAGTGGCGCGTCGA
CGAGAACTGA
back to top