mRNA_M-pyrifera_M_contig112618.2633.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112618.2633.1
Unique NamemRNA_M-pyrifera_M_contig112618.2633.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112618.2633.1 vs. uniprot
Match: UPI00140DFBD8 (immunoglobulin domain-containing protein n=1 Tax=Perlabentimonas gracilis TaxID=2715279 RepID=UPI00140DFBD8)

HSP 1 Score: 58.5 bits (140), Expect = 1.100e-7
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:   19 LLFLMIHVVSISEAQDFSLNNYTGDWNDTNSWNSGTIPANDDMDENLTINGYITLQTGVLEFTNGG-----GETLIINDTLVVASAGTSRLRGGNTITVNGLLVIAGDLN 333
            +L L + +VS       S +NYTG WND+NSW  GTIP + +   ++ I+G+ITLQ G L F+         +TLIIN  L + +     +  G  + V G + +A  +N
Sbjct:   13 ILALALALVSFGVFSQTSKDNYTGLWNDSNSWVGGTIPNSANPQNSVYIDGFITLQ-GNLTFSKNNVNLYVRDTLIINGDLTLGNNNDLSIFDGGVLIVTGSVFVANQVN 121
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112618.2633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00140DFBD81.100e-735.45immunoglobulin domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112618contigM-pyrifera_M_contig112618:232..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.290171-CDS-M-pyrifera_M_contig112618:231..5641622815640.290171-CDS-M-pyrifera_M_contig112618:231..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112618 232..564 +
1692277500.5440762-CDS-M-pyrifera_M_contig112618:231..5641692277500.5440762-CDS-M-pyrifera_M_contig112618:231..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112618 232..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112618.2633.1prot_M-pyrifera_M_contig112618.2633.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112618 232..564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112618.2633.1

>prot_M-pyrifera_M_contig112618.2633.1 ID=prot_M-pyrifera_M_contig112618.2633.1|Name=mRNA_M-pyrifera_M_contig112618.2633.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MRTYFILLFLMIHVVSISEAQDFSLNNYTGDWNDTNSWNSGTIPANDDMD
ENLTINGYITLQTGVLEFTNGGGETLIINDTLVVASAGTSRLRGGNTITV
NGLLVIAGDLN
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mRNA from alignment at M-pyrifera_M_contig112618:232..564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112618.2633.1 ID=mRNA_M-pyrifera_M_contig112618.2633.1|Name=mRNA_M-pyrifera_M_contig112618.2633.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig112618:232..564+ (Macrocystis pyrifera P11B4 male)
ATGAGAACATACTTTATTCTGTTGTTTCTGATGATTCATGTAGTCAGCAT
ATCAGAAGCACAAGATTTCAGCCTAAACAACTATACTGGGGATTGGAATG
ATACAAATTCATGGAATTCGGGCACAATTCCAGCCAATGATGATATGGAT
GAGAATCTTACGATCAATGGTTACATTACCCTTCAGACCGGAGTGCTTGA
GTTTACCAATGGAGGTGGTGAGACGTTGATCATAAATGACACTTTGGTAG
TTGCAAGCGCAGGCACTTCAAGACTTCGCGGGGGCAATACAATCACAGTG
AATGGCTTATTAGTAATAGCAGGTGATTTGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112618:232..564+

>mRNA_M-pyrifera_M_contig112618.2633.1 ID=mRNA_M-pyrifera_M_contig112618.2633.1|Name=mRNA_M-pyrifera_M_contig112618.2633.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig112618:232..564+ (Macrocystis pyrifera P11B4 male)
ATGAGAACATACTTTATTCTGTTGTTTCTGATGATTCATGTAGTCAGCAT
ATCAGAAGCACAAGATTTCAGCCTAAACAACTATACTGGGGATTGGAATG
ATACAAATTCATGGAATTCGGGCACAATTCCAGCCAATGATGATATGGAT
GAGAATCTTACGATCAATGGTTACATTACCCTTCAGACCGGAGTGCTTGA
GTTTACCAATGGAGGTGGTGAGACGTTGATCATAAATGACACTTTGGTAG
TTGCAAGCGCAGGCACTTCAAGACTTCGCGGGGGCAATACAATCACAGTG
AATGGCTTATTAGTAATAGCAGGTGATTTGAATATGAGAACATACTTTAT
TCTGTTGTTTCTGATGATTCATGTAGTCAGCATATCAGAAGCACAAGATT
TCAGCCTAAACAACTATACTGGGGATTGGAATGATACAAATTCATGGAAT
TCGGGCACAATTCCAGCCAATGATGATATGGATGAGAATCTTACGATCAA
TGGTTACATTACCCTTCAGACCGGAGTGCTTGAGTTTACCAATGGAGGTG
GTGAGACGTTGATCATAAATGACACTTTGGTAGTTGCAAGCGCAGGCACT
TCAAGACTTCGCGGGGGCAATACAATCACAGTGAATGGCTTATTAGTAAT
AGCAGGTGATTTGAAT
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