mRNA_M-pyrifera_M_contig112585.2624.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112585.2624.1
Unique NamemRNA_M-pyrifera_M_contig112585.2624.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Match: L8H8X8_ACACA (Mitochondrial carrier protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8X8_ACACA)

HSP 1 Score: 76.3 bits (186), Expect = 1.280e-14
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIRNFVGGGLASVCSSAVTVPADVVSQKLMI 234
            GFYKGF +  VG IP Q +Y++  E+VR  ++    S F  DS++  A+RNF+GGG AS+ SS V+VP DV+SQ LMI
Sbjct:   80 GFYKGFLTTSVGIIPGQFMYITVYEFVRHRIK----SFFPTDSLRYDALRNFIGGGTASLASSLVSVPLDVISQLLMI 153          
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Match: A0A7J7QQJ0_9CHLO (Putative mitochondrial carrier protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQJ0_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 6.920e-10
Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIRNFVGGGLASVCSSAVTVPADVVSQKLMI 234
            GFY+GF + ++GT+P + IY+++LE  +S +++ G  +    S  AG + +FVGG   S+ + AV VP DVVSQ+LM+
Sbjct:   70 GFYRGFGTVLLGTMPGRTIYMTSLEMAKSAVQKVGDKLDIAPSALAG-VSSFVGGAAGSLSTQAVVVPIDVVSQRLMV 146          
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Match: A0A250X6E4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X6E4_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 1.080e-9
Identity = 28/78 (35.90%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIRNFVGGGLASVCSSAVTVPADVVSQKLMI 234
            GFY+G+ + V GT+P++M+Y+++LEY+++ L   G  +   ++  AG   NF+  G+AS  +  ++VP DV++Q+ M+
Sbjct:   66 GFYRGYATAVFGTVPSRMVYLTSLEYMKTTLNNAGRKLEISETTLAGT-SNFIAAGIASCATQLISVPVDVIAQRQMV 142          
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Match: A0A383WJG2_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WJG2_TETOB)

HSP 1 Score: 62.0 bits (149), Expect = 1.960e-9
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIRNFVGGGLASVCSSAVTVPADVVSQKLMI 234
            GFY+GF + ++GT+P + IY+++LE  +S  ++ G  +    S  AG + +FVGG   S+ + AV VP DVVSQ+LM+
Sbjct:   70 GFYRGFGTVLLGTMPGRTIYMTSLEMAKSATQKLGEKLEIAPSALAG-VSSFVGGAAGSLSTQAVVVPIDVVSQRLMV 146          
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Match: A0A5B8MEI7_9CHLO (Mitochondrial carrier protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MEI7_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 2.530e-9
Identity = 30/78 (38.46%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIRNFVGGGLASVCSSAVTVPADVVSQKLMI 234
            G Y+GFP+ V G +PA+++Y+STLE V+S +++   +  + D  +  A  +F+ G  AS+ S  + VP DV+SQ+ M+
Sbjct:   92 GLYRGFPTVVTGFLPARLVYLSTLESVKSRMKKVLFANTQLDQTKVVAFSSFLSGACASLASQTIFVPVDVISQQQMV 169          
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Match: UPI0010357E3E (solute carrier family 25 member 44-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010357E3E)

HSP 1 Score: 59.3 bits (142), Expect = 7.790e-9
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIRNFVGGGLASVCSSAVTVPADVVSQKLMI 234
            G Y+GF + + G IPA++I+++ LE  +    R        +  +A AI N +GG LAS+CS AV VP DVVSQKLM+
Sbjct:   78 GLYRGFGTVITGAIPARIIFLTALETTKVAAFRFVEPFKLSEPTEA-AIANGIGGMLASLCSQAVFVPIDVVSQKLMV 154          
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Match: A0A022Q1A4_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q1A4_ERYGU)

HSP 1 Score: 59.7 bits (143), Expect = 1.130e-8
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    1 GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIRNFVGGGLASVCSSAVTVPADVVSQKLMI 234
            GFY GF + ++GTIPA+ +Y   LE  +SHL   G S        A AI N   G  A+V +  V  P DVVSQ+LM+
Sbjct:   79 GFYSGFGTSLMGTIPARALYTCALEVTKSHLGNAGISQLGFSDASASAIANAAAGLSAAVAAQLVWTPVDVVSQRLMV 156          
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Match: UPI001F5E1C49 (solute carrier family 25 member 44 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5E1C49)

HSP 1 Score: 59.7 bits (143), Expect = 1.140e-8
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIRNFVGGGLASVCSSAVTVPADVVSQKLMI 234
            G Y+GF + + G IPA++I++S LE  ++   R    +   +S +A A+ N +GG  AS+CS AV VP DVVSQKLM+
Sbjct:   81 GLYRGFGTVITGAIPARIIFLSALEKTKATSLRLVKPLELSESTEA-ALANGLGGLTASLCSQAVFVPIDVVSQKLMV 157          
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Match: A0A5J4Y3N1_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y3N1_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 1.230e-8
Identity = 31/78 (39.74%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIRNFVGGGLASVCSSAVTVPADVVSQKLMI 234
            G Y+GF + V G IP++++Y++TLE ++S        I   ++  AGA  NF+ G +AS+ + ++ VP DVVSQ+LM+
Sbjct:   73 GLYRGFGTVVFGAIPSRIVYLTTLEAMKSVATPFANRISANETQAAGAA-NFIAGAVASLVTQSIIVPVDVVSQRLMV 149          
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Match: A0A1Y1I2X0_KLENI (Mitochondrial substrate carrier family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I2X0_KLENI)

HSP 1 Score: 59.3 bits (142), Expect = 1.610e-8
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    1 GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIRNFVGGGLASVCSSAVTVPADVVSQKLMI 234
            GFYKGF + ++G++PA+M+Y+STLE  +S +      +   +S  AG I + V G  ASV +  V VP DVV+Q+LM+
Sbjct:   86 GFYKGFGTTILGSLPARMVYMSTLERTKSFVASETRRLGIPESTAAG-ITSGVAGLTASVVTQTVVVPVDVVTQRLMV 162          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112585.2624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H8X8_ACACA1.280e-1451.28Mitochondrial carrier protein n=1 Tax=Acanthamoeba... [more]
A0A7J7QQJ0_9CHLO6.920e-1042.31Putative mitochondrial carrier protein n=1 Tax=Sce... [more]
A0A250X6E4_9CHLO1.080e-935.90Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A383WJG2_TETOB1.960e-942.31Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A5B8MEI7_9CHLO2.530e-938.46Mitochondrial carrier protein n=1 Tax=Chloropicon ... [more]
UPI0010357E3E7.790e-944.87solute carrier family 25 member 44-like n=1 Tax=Ca... [more]
A0A022Q1A4_ERYGU1.130e-843.59Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
UPI001F5E1C491.140e-844.87solute carrier family 25 member 44 n=1 Tax=Lolium ... [more]
A0A5J4Y3N1_9CHLO1.230e-839.74Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A1Y1I2X0_KLENI1.610e-843.59Mitochondrial substrate carrier family protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112585contigM-pyrifera_M_contig112585:183..552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.0
Seed ortholog evalue4.4e-09
Seed eggNOG ortholog3067.XP_002949352.1
KEGG koko:K15121
KEGG TC2.A.29
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0019867,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0098573,GO:0098588,GO:0098805
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGs34HX1@3041,37QVJ@33090,KOG0765@1,KOG0765@2759
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.777947-CDS-M-pyrifera_M_contig112585:182..2771622815639.777947-CDS-M-pyrifera_M_contig112585:182..277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112585 183..277 -
1692277500.2965894-CDS-M-pyrifera_M_contig112585:182..2771692277500.2965894-CDS-M-pyrifera_M_contig112585:182..277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112585 183..277 -
1622815639.7937343-CDS-M-pyrifera_M_contig112585:413..5521622815639.7937343-CDS-M-pyrifera_M_contig112585:413..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112585 414..552 -
1692277500.3097575-CDS-M-pyrifera_M_contig112585:413..5521692277500.3097575-CDS-M-pyrifera_M_contig112585:413..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112585 414..552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112585.2624.1prot_M-pyrifera_M_contig112585.2624.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112585 183..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112585.2624.1

>prot_M-pyrifera_M_contig112585.2624.1 ID=prot_M-pyrifera_M_contig112585.2624.1|Name=mRNA_M-pyrifera_M_contig112585.2624.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
GFYKGFPSFVVGTIPAQMIYVSTLEYVRSHLRRHGGSIFEGDSIQAGAIR
NFVGGGLASVCSSAVTVPADVVSQKLMI
back to top

mRNA from alignment at M-pyrifera_M_contig112585:183..552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112585.2624.1 ID=mRNA_M-pyrifera_M_contig112585.2624.1|Name=mRNA_M-pyrifera_M_contig112585.2624.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=370bp|location=Sequence derived from alignment at M-pyrifera_M_contig112585:183..552- (Macrocystis pyrifera P11B4 male)
GGGTTCTACAAGGGCTTCCCCAGCTTCGTCGTGGGCACCATTCCTGCACA GATGATCTACGTCTCCACATTGGAGTACGTCAGATCGCATCTCAGACGTC ATGGAGGGTCGATATTCGAAGGAGACTCTATCCAAGCAGGTATGCAGCCG CCTCGCTGCCTCACTCCATTCCACTGCATCCACGCTCTCCTCTTCTGCAT GGAAGGCTCGTGCGGAACGCATGTGATGTCGTCAGGCAGCAGTTGGCGCC TTCTCCATGTACTTACGTGCGGTAGGGGCCATCCGAAACTTCGTCGGGGG AGGGTTGGCGTCGGTGTGCTCGTCGGCTGTGACGGTGCCAGCCGATGTAG TTTCACAGAAGCTCATGATA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112585:183..552-

>mRNA_M-pyrifera_M_contig112585.2624.1 ID=mRNA_M-pyrifera_M_contig112585.2624.1|Name=mRNA_M-pyrifera_M_contig112585.2624.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig112585:183..552- (Macrocystis pyrifera P11B4 male)
GGGTTCTACAAGGGCTTCCCCAGCTTCGTCGTGGGCACCATTCCTGCACA
GATGATCTACGTCTCCACATTGGAGTACGTCAGATCGCATCTCAGACGTC
ATGGAGGGTCGATATTCGAAGGAGACTCTATCCAAGCAGGGGTTCTACAA
GGGCTTCCCCAGCTTCGTCGTGGGCACCATTCCTGCACAGATGATCTACG
TCTCCACATTGGAGTACGTCAGATCGCATCTCAGACGTCATGGAGGGTCG
ATATTCGAAGGAGACTCTATCCAAGCAGGGGCCATCCGAAACTTCGTCGG
GGGAGGGTTGGCGTCGGTGTGCTCGTCGGCTGTGACGGTGCCAGCCGATG
TAGTTTCACAGAAGCTCATGATAGGGCCATCCGAAACTTCGTCGGGGGAG
GGTTGGCGTCGGTGTGCTCGTCGGCTGTGACGGTGCCAGCCGATGTAGTT
TCACAGAAGCTCATGATA
back to top