mRNA_M-pyrifera_M_contig112580.2623.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112580.2623.1
Unique NamemRNA_M-pyrifera_M_contig112580.2623.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Match: A0A433QFQ3_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QFQ3_9FUNG)

HSP 1 Score: 88.6 bits (218), Expect = 4.210e-18
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 RMGDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDGGRRTYARVTVGVEALAAVTNVIDATFFDVDEDGVLDLLFNARDDDDNVGRERVGLLYNALNVDSMFLK 345
            R GD+NLDGYPDLLL+  +       + LLE+V C  + C   A   GRR++ +V  G + L ++TN   A FFD+DEDG LD++    DD     R    +  N  N D+ FLK
Sbjct:  354 RAGDYNLDGYPDLLLISSSDSGSTSHVILLESVLCTPNTCSDEAVAAGRRSFVKVLKGAQTLTSITNARAAAFFDIDEDGTLDIMVLQSDDSGTAARNVQPIHNNYFN-DAFFLK 467          
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Match: A0A433D3I6_9FUNG (Uncharacterized protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D3I6_9FUNG)

HSP 1 Score: 88.6 bits (218), Expect = 4.450e-18
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 RMGDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDGGRRTYARVTVGVEALAAVTNVIDATFFDVDEDGVLDLLFNARDDDDNVGRERVGLLYNALNVDSMFLK 345
            R GD+NLDGYPDLLL+  +       + LLE+V C  + C   A   GRR++ +V  G + L ++TN   A FFD+DEDG LD++    DD     R    +  N  N D+ FLK
Sbjct:  398 RAGDYNLDGYPDLLLISSSDSGSTSHVILLESVLCTPNTCSDEAVAAGRRSFVKVLKGAQTLTSITNARAAAFFDIDEDGTLDIMVLQSDDSGTAARNVQPIHNNYFN-DAFFLK 511          
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Match: A0A397J6I7_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J6I7_9GLOM)

HSP 1 Score: 84.7 bits (208), Expect = 9.910e-17
Identity = 48/119 (40.34%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 RMGDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDGGRRTYARVTVGVEALAAVTNVIDATFFDVDEDGVLDLLFNARDDDDNVGRERVGLLYNALNVDSMFLKVLSL 357
            R+GD+NLDGYPDLL+V  +  S    + LLE+  C +S C  AA    RR + +V+ G  AL+ +++   ATF+D+DEDG LD+L    D   +    ++ ++ N   VD+ FLK L L
Sbjct:  390 RVGDYNLDGYPDLLVVTYSSSSS--HVTLLESYLCTISYCYQAAVTAKRREFKQVSDGASALSDISDAKSATFYDLDEDGTLDILVLKSD---SGSARKIQMIANNYFVDAFFLKALML 503          
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Match: A0A4P9Y8F5_9FUNG (Uncharacterized protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y8F5_9FUNG)

HSP 1 Score: 82.4 bits (202), Expect = 6.360e-16
Identity = 53/118 (44.92%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    7 GDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDGGRRTYARVTVGVEALAAVTNVIDATFFDVDEDGVLDLL-FNARDDDDNVGRERVGLLYNALNVDSMFLKVLSL 357
            GDF++DG+PD+L VL    SG R  +L  +V C    C + A    RRT   VT G EAL A+ NV    F DV EDG LD++ F+A   D   GR  V +L N  N D+ FLK L L
Sbjct:  344 GDFDIDGFPDVLAVLETGSSG-RRARLYRSVPCKDGACSAKAVAAKRRTLEEVTEGAEALTAIENVRSTAFLDVAEDGSLDIIVFSAPPGDKGAGRTMV-VLENNYNSDAFFLKTLML 459          
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Match: A0A2G5BDR0_COERN (Uncharacterized protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BDR0_COERN)

HSP 1 Score: 81.3 bits (199), Expect = 1.620e-15
Identity = 49/120 (40.83%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 RMGDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDG--GRRTYARVTVGVEALAAVTNVIDATFFDVDEDGVLDLLFNARDDDDNVGRERVGLLYNALNVDSMFLKVLS 354
            R+GDFNLDGYPD+ +V   K S +  ++LL +V+C+    G    DG   RR Y  VT GV AL  + +V D  FFD+D  G LD+L    D   + G++R G +YN    D+ F+K ++
Sbjct:  368 RLGDFNLDGYPDIAIVT-KKGSSESRVRLLRSVSCEGCKAGK---DGLLDRRDYKAVTDGVAALEQLKHVQDLAFFDIDGTGTLDILVYYLD---STGKKRTGAIYNNFFTDAFFIKAIA 480          
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Match: A0A077WAW7_9FUNG (Uncharacterized protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WAW7_9FUNG)

HSP 1 Score: 81.3 bits (199), Expect = 1.620e-15
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    7 GDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDGGRRTYARVTVGVEALAAVTNVIDATFFDVDEDGVLDLL 255
            GD+NLDGYPDLL+        ++++ LLEN  CD  LC S A+  GRRT+  V  G +AL  ++    ATFFD+DEDG LD+L
Sbjct:  389 GDYNLDGYPDLLVTT------NKQVLLLENTVCDNRLCSSRASQAGRRTFTIVKDGTDALTKISRPKHATFFDIDEDGSLDIL 465          
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Match: A0A0B7ND09_9FUNG (Uncharacterized protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7ND09_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 2.210e-15
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    7 GDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDGGRRTYARVTVGVEALAAVTNVIDATFFDVDEDGVLDLLFNARDDDDNVGRERVGLLYNALNVDSMFLK 345
            GD+NLDGYPDLL+         + + LLE++ CD  LC S+A    RRT+A VT G + L+ + +   A FFD+DEDG LD+L        +  +     + N    D++FLK
Sbjct:  384 GDYNLDGYPDLLVTT------SQRVLLLESILCDTPLCTSSAQAASRRTFAVVTTGADVLSKIASPTQAAFFDIDEDGSLDILVLQNLQKSSDAKRTPNFIINNFFNDALFLK 490          
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Match: A0A433PPS9_9FUNG (Uncharacterized protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PPS9_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 3.050e-15
Identity = 46/115 (40.00%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 RMGDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDGGRRTYARVTVGVEALAAVTNVIDATFFDVDEDGVLDLLFNARDDDDNVGRERVGLLYNALNVDSMFLK 345
            R+GD+NLDGYPDLLL+          + LLE+V C +  C S A    RRT+ +V  G   L ++ N   A FFD+DEDG LD++           R  V L+ N    D+ FLK
Sbjct:  419 RIGDYNLDGYPDLLLISTPNSGSTSHVILLESVLCTLDTCSSHAVAAERRTFVKVVKGANVLTSMANPRAAAFFDIDEDGTLDIVVLQSAGSGTAARN-VQLIRNNYFNDAFFLK 532          
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Match: A0A8H7SCG1_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SCG1_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 4.120e-15
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    7 GDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDGGRRTYARVTVGVEALAAVTNVIDATFFDVDEDGVLDLLFNARDDDDNVGRERVGLLYNALNVDSMFLK 345
            GD+NLDGYPDLL+   NK      + LL++  C   LC S AT   RRT++ V  G EAL+ + N   A FFD+DEDG LD+L  ++    +        + N    D+ FLK
Sbjct:  384 GDYNLDGYPDLLVTTNNK------VLLLDSTLCSNQLCTSGATMASRRTFSVVRQGAEALSKIPNPRQAVFFDIDEDGSLDMLILSKTSRQSDANRTPNFIINNFFNDAFFLK 490          
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Match: A0A015K7M5_RHIIW (Uncharacterized protein n=10 Tax=Rhizophagus TaxID=1129544 RepID=A0A015K7M5_RHIIW)

HSP 1 Score: 79.7 bits (195), Expect = 5.620e-15
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 RMGDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDGGRRTYARVTVGVEALAAVTNVIDATFFDVDEDGVLDLLFNARDDDDNVGRERVGLLYNALNVDSMFLKVLSL 357
            R+GD+NLDGYPDLL++  N +     + LLE++ C    C S+A    +RT+ +V  G + L+ + N  +A F D+DEDG +D+L      D    R  V +++N    D+ FLK L L
Sbjct:  383 RIGDYNLDGYPDLLVITSNSKGS--HVTLLESILCTNRKCSSSAVASQKRTFIKVNDGAQPLSDIKNAKNAAFLDLDEDGTMDILVLTATGDKTASRG-VRMIHNNYFNDAFFLKTLVL 498          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112580.2623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A433QFQ3_9FUNG4.210e-1840.87Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A433D3I6_9FUNG4.450e-1840.87Uncharacterized protein n=2 Tax=Jimgerdemannia fla... [more]
A0A397J6I7_9GLOM9.910e-1740.34Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A4P9Y8F5_9FUNG6.360e-1644.92Uncharacterized protein n=1 Tax=Piptocephalis cyli... [more]
A0A2G5BDR0_COERN1.620e-1540.83Uncharacterized protein n=1 Tax=Coemansia reversa ... [more]
A0A077WAW7_9FUNG1.620e-1549.40Uncharacterized protein n=2 Tax=Lichtheimia TaxID=... [more]
A0A0B7ND09_9FUNG2.210e-1538.94Uncharacterized protein n=1 Tax=Parasitella parasi... [more]
A0A433PPS9_9FUNG3.050e-1540.00Uncharacterized protein n=1 Tax=Endogone sp. FLAS-... [more]
A0A8H7SCG1_9FUNG4.120e-1540.71Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A015K7M5_RHIIW5.620e-1537.82Uncharacterized protein n=10 Tax=Rhizophagus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112580contigM-pyrifera_M_contig112580:28..384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score80.9
Seed ortholog evalue4.5e-13
Seed eggNOG ortholog36080.S2J8M5
KEGG koko:K17257
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
EggNOG OGs1GRSQ@112252,39KK5@33154,3P114@4751,KOG4550@1,KOG4550@2759
COG Functional cat.S
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons1
Model size357
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.7209225-CDS-M-pyrifera_M_contig112580:27..3811622815639.7209225-CDS-M-pyrifera_M_contig112580:27..381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112580 28..381 -
1692277500.2784405-CDS-M-pyrifera_M_contig112580:27..3811692277500.2784405-CDS-M-pyrifera_M_contig112580:27..381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112580 28..381 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.7347732-UTR-M-pyrifera_M_contig112580:381..3841622815639.7347732-UTR-M-pyrifera_M_contig112580:381..384Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112580 382..384 -
1692277500.288308-UTR-M-pyrifera_M_contig112580:381..3841692277500.288308-UTR-M-pyrifera_M_contig112580:381..384Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112580 382..384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112580.2623.1prot_M-pyrifera_M_contig112580.2623.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112580 28..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112580.2623.1

>prot_M-pyrifera_M_contig112580.2623.1 ID=prot_M-pyrifera_M_contig112580.2623.1|Name=mRNA_M-pyrifera_M_contig112580.2623.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MGDFNLDGYPDLLLVLLNKESGDRELQLLENVACDVSLCGSAATDGGRRT
YARVTVGVEALAAVTNVIDATFFDVDEDGVLDLLFNARDDDDNVGRERVG
LLYNALNVDSMFLKVLSL
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mRNA from alignment at M-pyrifera_M_contig112580:28..384-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112580.2623.1 ID=mRNA_M-pyrifera_M_contig112580.2623.1|Name=mRNA_M-pyrifera_M_contig112580.2623.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig112580:28..384- (Macrocystis pyrifera P11B4 male)
AGGATGGGAGACTTCAACCTCGACGGCTACCCCGACCTTCTCCTCGTGCT CCTTAACAAAGAGAGCGGTGACAGAGAACTACAGCTGCTCGAGAACGTCG CCTGTGACGTGAGCCTCTGTGGCTCTGCAGCAACGGACGGCGGCCGTCGC ACTTACGCGAGGGTTACCGTTGGCGTCGAGGCTCTCGCGGCCGTCACCAA CGTTATCGACGCCACTTTCTTCGACGTCGACGAGGATGGAGTCCTCGACC TCCTCTTCAACGCACGTGATGACGACGACAACGTCGGCAGGGAGCGCGTC GGCCTTCTCTACAACGCCCTCAACGTCGACTCCATGTTCCTCAAGGTTCT CTCTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112580:28..384-

>mRNA_M-pyrifera_M_contig112580.2623.1 ID=mRNA_M-pyrifera_M_contig112580.2623.1|Name=mRNA_M-pyrifera_M_contig112580.2623.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig112580:28..384- (Macrocystis pyrifera P11B4 male)
ATGGGAGACTTCAACCTCGACGGCTACCCCGACCTTCTCCTCGTGCTCCT
TAACAAAGAGAGCGGTGACAGAGAACTACAGCTGCTCGAGAACGTCGCCT
GTGACGTGAGCCTCTGTGGCTCTGCAGCAACGGACGGCGGCCGTCGCACT
TACGCGAGGGTTACCGTTGGCGTCGAGGCTCTCGCGGCCGTCACCAACGT
TATCGACGCCACTTTCTTCGACGTCGACGAGGATGGAGTCCTCGACCTCC
TCTTCAACGCACGTGATGACGACGACAACGTCGGCAGGGAGCGCGTCGGC
CTTCTCTACAACGCCCTCAACGTCGACTCCATGTTCCTCAAGGTTCTCTC
TCTCATGGGAGACTTCAACCTCGACGGCTACCCCGACCTTCTCCTCGTGC
TCCTTAACAAAGAGAGCGGTGACAGAGAACTACAGCTGCTCGAGAACGTC
GCCTGTGACGTGAGCCTCTGTGGCTCTGCAGCAACGGACGGCGGCCGTCG
CACTTACGCGAGGGTTACCGTTGGCGTCGAGGCTCTCGCGGCCGTCACCA
ACGTTATCGACGCCACTTTCTTCGACGTCGACGAGGATGGAGTCCTCGAC
CTCCTCTTCAACGCACGTGATGACGACGACAACGTCGGCAGGGAGCGCGT
CGGCCTTCTCTACAACGCCCTCAACGTCGACTCCATGTTCCTCAAGGTTC
TCTCTCTC
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