mRNA_M-pyrifera_M_contig112571.2621.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112571.2621.1
Unique NamemRNA_M-pyrifera_M_contig112571.2621.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Match: A0A397IS47_9GLOM (Vac14_Fig4_bd domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IS47_9GLOM)

HSP 1 Score: 83.2 bits (204), Expect = 2.350e-16
Identity = 51/108 (47.22%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:    1 LRMHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPRARQGATPEAAAAHSPAAEPPHCPEVAALATIDFDELLAHFDAVQEKHFLFRKQVQQ 324
            LR+ LLEP+ +PYLFK LYGLLMLLPQSSAF  LK RL SV+++G L L+P++    +  ++++                  I F ELL HF AVQ KH   RKQ  Q
Sbjct:  707 LRLQLLEPDKYPYLFKCLYGLLMLLPQSSAFASLKNRLTSVSSMGFLHLIPKSEPKRSKSSSSSKDDG--------------IKFQELLTHFRAVQTKHEKIRKQALQ 800
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BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Match: A0A433QQV0_9FUNG (Vac14_Fig4_bd domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QQV0_9FUNG)

HSP 1 Score: 83.2 bits (204), Expect = 2.370e-16
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 LRMHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPRARQGATPEAAAAHSPA-------AEPPHCPEVAALATIDFDELLAHFDAVQEKHFLFRKQVQQ 324
            LR+ LLEPE +P+LFK LYG+LMLLPQSSAF  L+ RL SV+++G L ++P++      +  A+  P        A P    EV A   I F +LLAHF AVQ KH   R+Q  Q
Sbjct:  842 LRLQLLEPEKYPFLFKCLYGILMLLPQSSAFATLRNRLNSVSSLGFLHIMPKSTTPVPAQETASKRPLGVGKTSLAAPKQQEEVVA---IKFHDLLAHFRAVQAKHEKARRQTLQ 953
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BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Match: A0A8H7PXA4_MORIS (Vac14_Fig4_bd domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PXA4_MORIS)

HSP 1 Score: 82.8 bits (203), Expect = 3.200e-16
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:    1 LRMHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPRARQGATPEAAAAHSPAAEPPHCPEVAALATIDFDELLAHFDAVQEKHFLFRKQVQQ 324
            LR+ LLEPE +PYLFK LYG+LMLLPQSSAF+ L+ RL SV+++G L ++P++     PE A      + P    E     +I F +LL HF  VQ +H  FR+QV Q
Sbjct:  715 LRLQLLEPERYPYLFKCLYGILMLLPQSSAFSTLRNRLSSVSSLGFLHVMPKSY----PEPAKRQGSKSVPGKQDEP----SIKFQDLLLHFKNVQARHEKFRRQVLQ 814
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BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Match: A0A0B7NBX3_9FUNG (Vac14_Fig4_bd domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NBX3_9FUNG)

HSP 1 Score: 82.8 bits (203), Expect = 3.220e-16
Identity = 49/107 (45.79%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 LRMHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPRARQGATPEAAAAHSP--AAEPPHCPEVAALATIDFDELLAHFDAVQEKHFLFRKQ 315
            LR+ LLEPE +PYLFK LYG+LMLLPQSSAF+ L+ RL SV+++G L +LP+A  G++    ++ S           +V  ++TI + +LL HF +VQ +H   R+Q
Sbjct:  732 LRLQLLEPEKYPYLFKCLYGILMLLPQSSAFSTLRNRLSSVSSLGFLHVLPKASPGSSSTTTSSTSTDRRISKSTSTKVDEISTIKYSDLLTHFKSVQFRHEKQRRQ 838
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BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Match: A0A1Y1YST8_9FUNG (ARM repeat-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YST8_9FUNG)

HSP 1 Score: 82.0 bits (201), Expect = 5.970e-16
Identity = 53/105 (50.48%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:    1 LRMHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPRARQGATPEAAAAHSPAAEPPHCPEVAALATIDFDELLAHFDAVQEKHFLFRKQ 315
            LR+ LLEPE +PYLFK LYG+LMLLPQS AF  L+ RL SV ++G L L+P+  +   PE+    S  A  P   EV     + F ELL+HF AVQ KH   R Q
Sbjct:  727 LRLQLLEPEKYPYLFKCLYGVLMLLPQSGAFATLRNRLSSVNSLGFLHLVPQKSEAKPPESRRNSSKPA--PTQAEV-----LKFSELLSHFRAVQFKHEKSRNQ 824
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BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Match: I1CNI7_RHIO9 (TOG domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CNI7_RHIO9)

HSP 1 Score: 81.6 bits (200), Expect = 8.150e-16
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:    1 LRMHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPRARQGATPEAAAAHSPAAEPPHCPE--VAALATIDFDELLAHFDAVQEKHFLFRKQ 315
            LR+ LLEPE +PYLFK LYG+LMLLPQSSAF+ L+ RL SV+++G L +LP++   AT   AA  + + E     +  +     I + ELL HF  VQ +H   R+Q
Sbjct:  680 LRLQLLEPEKYPYLFKCLYGILMLLPQSSAFSTLRNRLSSVSSLGFLHVLPKSPIAATTTNAATSTTSTEKRQAAKAKIEEANAIRYQELLQHFKQVQARHEKQRRQ 786
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BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Match: A0A8H3QW40_9GLOM (ARM repeat-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3QW40_9GLOM)

HSP 1 Score: 81.6 bits (200), Expect = 8.150e-16
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:    1 LRMHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPRARQGA-TPEAAAAHSPAAEPPHCPEVAALATIDFDELLAHFDAVQEKHFLFRKQVQQ 324
            LR+ LLEPE +PYLFK LYGLLMLLPQSSAF  LK RL SV+++G L L+P++     T  +    +P  E            I F +LL HF AVQ KH   R+Q  Q
Sbjct:  731 LRLQLLEPEKYPYLFKCLYGLLMLLPQSSAFASLKNRLTSVSSMGFLHLIPKSTHTTDTKRSTTKAAPTKED----------GIKFQDLLTHFRAVQAKHEKTREQASQ 829
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BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Match: A0A2Z6QNF1_9GLOM (Vac14_Fig4_bd domain-containing protein n=9 Tax=Glomeraceae TaxID=36751 RepID=A0A2Z6QNF1_9GLOM)

HSP 1 Score: 81.6 bits (200), Expect = 8.160e-16
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:    1 LRMHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPRARQGA-TPEAAAAHSPAAEPPHCPEVAALATIDFDELLAHFDAVQEKHFLFRKQVQQ 324
            LR+ LLEPE +PYLFK LYGLLMLLPQSSAF  LK RL SV+++G L L+P++     T  +    +P  E            I F +LL HF AVQ KH   R+Q  Q
Sbjct:  724 LRLQLLEPEKYPYLFKCLYGLLMLLPQSSAFASLKNRLTSVSSMGFLHLIPKSTHTTDTKRSTTKAAPTKED----------GIKFQDLLTHFRAVQAKHEKTREQASQ 822
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BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Match: A0A168SPI3_ABSGL (Vac14_Fig4_bd domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168SPI3_ABSGL)

HSP 1 Score: 80.9 bits (198), Expect = 1.520e-15
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:    1 LRMHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPRARQGATPEAAAAHSPAAEPPHCPEVAALATIDFDELLAHFDAVQEKHFLFRKQ 315
            LRM LLEPE +PYLFK LYG+LMLLPQSSAF+ L+ RL SV+++G L ++P++    T  A     P+ +  +  E  A   I F ELL HF +VQ +H   R+Q
Sbjct:  715 LRMQLLEPERYPYLFKCLYGILMLLPQSSAFSTLRNRLSSVSSLGFLNVMPKSTSTGTESAL--KRPSLKTANKNEEPA---IKFQELLQHFKSVQTRHERQRRQ 814
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BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Match: S2JBC6_MUCC1 (Vac14_Fig4_bd domain-containing protein n=4 Tax=Mucor TaxID=4830 RepID=S2JBC6_MUCC1)

HSP 1 Score: 80.9 bits (198), Expect = 1.520e-15
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:    1 LRMHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPRARQG--ATPEAAAAHSPAAEPPHCPEVAALATIDFDELLAHFDAVQEKHFLFRKQ 315
            LR+ LLEPE +PYLFK LYG+LMLLPQSSAF+ L+ RL SV+++G L +LP+A     +T   + +           +V  ++TI + +LL HF +VQ +H   R+Q
Sbjct:  713 LRLQLLEPEKYPYLFKCLYGILMLLPQSSAFSTLRNRLSSVSSLGFLHVLPKATPATSSTXXXSTSTDRKGSKSGFAKVEEISTIKYGDLLTHFKSVQSRHEKQRRQ 819
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112571.2621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397IS47_9GLOM2.350e-1647.22Vac14_Fig4_bd domain-containing protein n=1 Tax=Di... [more]
A0A433QQV0_9FUNG2.370e-1646.96Vac14_Fig4_bd domain-containing protein n=1 Tax=Ji... [more]
A0A8H7PXA4_MORIS3.200e-1648.15Vac14_Fig4_bd domain-containing protein n=1 Tax=Mo... [more]
A0A0B7NBX3_9FUNG3.220e-1645.79Vac14_Fig4_bd domain-containing protein n=1 Tax=Pa... [more]
A0A1Y1YST8_9FUNG5.970e-1650.48ARM repeat-containing protein n=1 Tax=Basidiobolus... [more]
I1CNI7_RHIO98.150e-1646.73TOG domain-containing protein n=1 Tax=Rhizopus del... [more]
A0A8H3QW40_9GLOM8.150e-1648.62ARM repeat-containing protein n=1 Tax=Rhizophagus ... [more]
A0A2Z6QNF1_9GLOM8.160e-1648.62Vac14_Fig4_bd domain-containing protein n=9 Tax=Gl... [more]
A0A168SPI3_ABSGL1.520e-1548.57Vac14_Fig4_bd domain-containing protein n=1 Tax=Ab... [more]
S2JBC6_MUCC11.520e-1544.86Vac14_Fig4_bd domain-containing protein n=4 Tax=Mu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112571contigM-pyrifera_M_contig112571:153..476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score78.6
Seed ortholog evalue2e-12
Seed eggNOG ortholog936053.I1CNI7
KEGG koko:K10875,ko:K15305
KEGG Pathwayko03440,ko05166,ko05203,map03440,map05166,map05203
Hectar predicted targeting categorysignal peptide
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005942,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009893,GO:0009987,GO:0010562,GO:0016020,GO:0019220,GO:0019222,GO:0019637,GO:0019898,GO:0030674,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0032991,GO:0033674,GO:0035032,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045937,GO:0046474,GO:0046486,GO:0046488,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051338,GO:0051347,GO:0060090,GO:0061695,GO:0065007,GO:0065009,GO:0070772,GO:0071704,GO:0090407,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.Vacuolar protein 14 C-terminal Fig4p binding
EggNOG OGs1GT9B@112252,38BFB@33154,3NV8T@4751,KOG0212@1,KOG0212@2759
COG Functional cat.S
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size324
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.614726-CDS-M-pyrifera_M_contig112571:152..4701622815639.614726-CDS-M-pyrifera_M_contig112571:152..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112571 153..470 -
1692277500.2187092-CDS-M-pyrifera_M_contig112571:152..4701692277500.2187092-CDS-M-pyrifera_M_contig112571:152..470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112571 153..470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.627849-UTR-M-pyrifera_M_contig112571:470..4761622815639.627849-UTR-M-pyrifera_M_contig112571:470..476Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112571 471..476 -
1692277500.2318363-UTR-M-pyrifera_M_contig112571:470..4761692277500.2318363-UTR-M-pyrifera_M_contig112571:470..476Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112571 471..476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112571.2621.1prot_M-pyrifera_M_contig112571.2621.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112571 153..470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112571.2621.1

>prot_M-pyrifera_M_contig112571.2621.1 ID=prot_M-pyrifera_M_contig112571.2621.1|Name=mRNA_M-pyrifera_M_contig112571.2621.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MHLLEPECHPYLFKALYGLLMLLPQSSAFTMLKTRLESVTTIGILQLLPR
ARQGATPEAAAAHSPAAEPPHCPEVAALATIDFDELLAHFDAVQEKHFLF
RKQVQQ
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mRNA from alignment at M-pyrifera_M_contig112571:153..476-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112571.2621.1 ID=mRNA_M-pyrifera_M_contig112571.2621.1|Name=mRNA_M-pyrifera_M_contig112571.2621.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig112571:153..476- (Macrocystis pyrifera P11B4 male)
CTGCGGATGCACCTGCTAGAGCCGGAGTGCCACCCGTACCTCTTCAAGGC
CCTCTACGGCCTTCTGATGCTGCTGCCGCAGAGCTCAGCCTTCACGATGC
TGAAGACGCGACTTGAGTCGGTGACGACCATTGGAATTCTGCAGCTCTTG
CCCAGGGCGCGCCAGGGCGCCACCCCAGAGGCGGCCGCCGCACACTCTCC
TGCGGCGGAGCCTCCGCACTGTCCAGAGGTGGCGGCGCTGGCCACCATCG
ACTTCGACGAACTCCTGGCTCACTTCGACGCAGTGCAAGAGAAGCACTTC
CTCTTCCGCAAGCAGGTGCAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112571:153..476-

>mRNA_M-pyrifera_M_contig112571.2621.1 ID=mRNA_M-pyrifera_M_contig112571.2621.1|Name=mRNA_M-pyrifera_M_contig112571.2621.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig112571:153..476- (Macrocystis pyrifera P11B4 male)
ATGCACCTGCTAGAGCCGGAGTGCCACCCGTACCTCTTCAAGGCCCTCTA
CGGCCTTCTGATGCTGCTGCCGCAGAGCTCAGCCTTCACGATGCTGAAGA
CGCGACTTGAGTCGGTGACGACCATTGGAATTCTGCAGCTCTTGCCCAGG
GCGCGCCAGGGCGCCACCCCAGAGGCGGCCGCCGCACACTCTCCTGCGGC
GGAGCCTCCGCACTGTCCAGAGGTGGCGGCGCTGGCCACCATCGACTTCG
ACGAACTCCTGGCTCACTTCGACGCAGTGCAAGAGAAGCACTTCCTCTTC
CGCAAGCAGGTGCAGCAGATGCACCTGCTAGAGCCGGAGTGCCACCCGTA
CCTCTTCAAGGCCCTCTACGGCCTTCTGATGCTGCTGCCGCAGAGCTCAG
CCTTCACGATGCTGAAGACGCGACTTGAGTCGGTGACGACCATTGGAATT
CTGCAGCTCTTGCCCAGGGCGCGCCAGGGCGCCACCCCAGAGGCGGCCGC
CGCACACTCTCCTGCGGCGGAGCCTCCGCACTGTCCAGAGGTGGCGGCGC
TGGCCACCATCGACTTCGACGAACTCCTGGCTCACTTCGACGCAGTGCAA
GAGAAGCACTTCCTCTTCCGCAAGCAGGTGCAGCAG
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