mRNA_M-pyrifera_M_contig112569.2620.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112569.2620.1
Unique NamemRNA_M-pyrifera_M_contig112569.2620.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig112569.2620.1 vs. uniprot
Match: A0A1G6DZW1_9HYPH (Uncharacterized protein n=1 Tax=Bauldia litoralis TaxID=665467 RepID=A0A1G6DZW1_9HYPH)

HSP 1 Score: 59.7 bits (143), Expect = 1.420e-7
Identity = 66/184 (35.87%), Postives = 78/184 (42.39%), Query Frame = 1 
Query:   22 AAAMVALALGQATAQNANLLD-AIDRSDLPQFRALLAGGADPDSTRDRLSFTPLALAAVRGEADFVXXXXXXXXXXXGPATMGLTPLALAVRSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDIAALLIDLGADIQAVNLYGDGVLNYAIYYEAPEIILLALRRRVRTSPLSVLF 570
            AA + A ++G + A +A  L+ AI   D    RA LA GADP+        + L L          XXXXXXXXXXX     G   L+ A RSC                                          L+  GADI AVN YG+G LNYAIYY  PE I   L R V T+PL  LF
Sbjct:   10 AAILAAFSIGPSVAADAGTLEPAILSGDAGAVRAALAAGADPNEIFPVYDTSALMLXXXXXXXXXXXXXXXXXXXXXWINGRGYNALSAAARSCRAGWDVAAALLDAGADIDNRSGARLTPLMVAIQEERPSFFRGLVAHGADINAVNAYGEGALNYAIYYRQPEYIATLLDRDVETAPLRNLF 193
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112569.2620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1G6DZW1_9HYPH1.420e-735.87Uncharacterized protein n=1 Tax=Bauldia litoralis ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112569contigM-pyrifera_M_contig112569:2..571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-25_002160.1
Exons1
Model size570
Cds size570
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.5803967-CDS-M-pyrifera_M_contig112569:1..5711622815639.5803967-CDS-M-pyrifera_M_contig112569:1..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112569 2..571 +
1692277500.207257-CDS-M-pyrifera_M_contig112569:1..5711692277500.207257-CDS-M-pyrifera_M_contig112569:1..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112569 2..571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112569.2620.1prot_M-pyrifera_M_contig112569.2620.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112569 2..571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112569.2620.1

>prot_M-pyrifera_M_contig112569.2620.1 ID=prot_M-pyrifera_M_contig112569.2620.1|Name=mRNA_M-pyrifera_M_contig112569.2620.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
MWKTTLIAAAMVALALGQATAQNANLLDAIDRSDLPQFRALLAGGADPDS
TRDRLSFTPLALAAVRGEADFVRALLDAGADPDGPATMGLTPLALAVRSC
RVDPAIVRMLVVAGADIDAPSGAGLSPVHVAIQSGRNDIAALLIDLGADI
QAVNLYGDGVLNYAIYYEAPEIILLALRRRVRTSPLSVLF
back to top

mRNA from alignment at M-pyrifera_M_contig112569:2..571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112569.2620.1 ID=mRNA_M-pyrifera_M_contig112569.2620.1|Name=mRNA_M-pyrifera_M_contig112569.2620.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig112569:2..571+ (Macrocystis pyrifera P11B4 male)
ATGTGGAAAACGACACTGATTGCCGCCGCAATGGTGGCCCTGGCACTCGG
CCAGGCGACGGCTCAAAATGCAAATCTGTTGGATGCGATCGATCGGAGTG
ATCTGCCGCAGTTTCGGGCGTTGTTGGCGGGTGGTGCCGATCCCGATTCA
ACACGCGACCGGTTGTCCTTCACGCCGCTGGCATTGGCGGCCGTCAGAGG
CGAGGCGGATTTCGTCCGGGCCCTGCTGGACGCGGGAGCGGATCCTGATG
GTCCTGCGACCATGGGCCTGACGCCGTTGGCGCTGGCCGTGCGCAGTTGC
CGTGTCGATCCGGCGATTGTTCGCATGCTGGTCGTCGCCGGAGCCGACAT
CGATGCGCCGTCCGGCGCCGGCCTGTCGCCGGTTCACGTTGCGATACAAT
CCGGACGCAACGACATCGCGGCCCTGCTGATCGACCTTGGAGCCGACATT
CAGGCGGTCAATCTCTACGGCGACGGCGTGCTCAATTATGCGATCTACTA
CGAGGCGCCGGAGATCATCCTGCTTGCCTTGCGCCGCCGCGTTCGGACCT
CTCCACTGTCGGTCCTGTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112569:2..571+

>mRNA_M-pyrifera_M_contig112569.2620.1 ID=mRNA_M-pyrifera_M_contig112569.2620.1|Name=mRNA_M-pyrifera_M_contig112569.2620.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig112569:2..571+ (Macrocystis pyrifera P11B4 male)
ATGTGGAAAACGACACTGATTGCCGCCGCAATGGTGGCCCTGGCACTCGG
CCAGGCGACGGCTCAAAATGCAAATCTGTTGGATGCGATCGATCGGAGTG
ATCTGCCGCAGTTTCGGGCGTTGTTGGCGGGTGGTGCCGATCCCGATTCA
ACACGCGACCGGTTGTCCTTCACGCCGCTGGCATTGGCGGCCGTCAGAGG
CGAGGCGGATTTCGTCCGGGCCCTGCTGGACGCGGGAGCGGATCCTGATG
GTCCTGCGACCATGGGCCTGACGCCGTTGGCGCTGGCCGTGCGCAGTTGC
CGTGTCGATCCGGCGATTGTTCGCATGCTGGTCGTCGCCGGAGCCGACAT
CGATGCGCCGTCCGGCGCCGGCCTGTCGCCGGTTCACGTTGCGATACAAT
CCGGACGCAACGACATCGCGGCCCTGCTGATCGACCTTGGAGCCGACATT
CAGGCGGTCAATCTCTACGGCGACGGCGTGCTCAATTATGCGATCTACTA
CGAGGCGCCGGAGATCATCCTGCTTGCCTTGCGCCGCCGCGTTCGGACCT
CTCCACTGTCGGTCCTGTTCATGTGGAAAACGACACTGATTGCCGCCGCA
ATGGTGGCCCTGGCACTCGGCCAGGCGACGGCTCAAAATGCAAATCTGTT
GGATGCGATCGATCGGAGTGATCTGCCGCAGTTTCGGGCGTTGTTGGCGG
GTGGTGCCGATCCCGATTCAACACGCGACCGGTTGTCCTTCACGCCGCTG
GCATTGGCGGCCGTCAGAGGCGAGGCGGATTTCGTCCGGGCCCTGCTGGA
CGCGGGAGCGGATCCTGATGGTCCTGCGACCATGGGCCTGACGCCGTTGG
CGCTGGCCGTGCGCAGTTGCCGTGTCGATCCGGCGATTGTTCGCATGCTG
GTCGTCGCCGGAGCCGACATCGATGCGCCGTCCGGCGCCGGCCTGTCGCC
GGTTCACGTTGCGATACAATCCGGACGCAACGACATCGCGGCCCTGCTGA
TCGACCTTGGAGCCGACATTCAGGCGGTCAATCTCTACGGCGACGGCGTG
CTCAATTATGCGATCTACTACGAGGCGCCGGAGATCATCCTGCTTGCCTT
GCGCCGCCGCGTTCGGACCTCTCCACTGTCGGTCCTGTTC
back to top