mRNA_M-pyrifera_M_contig112561.2618.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112561.2618.1
Unique NamemRNA_M-pyrifera_M_contig112561.2618.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig112561.2618.1 vs. uniprot
Match: A0A6H5KXI6_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 6.730e-31
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 MYPRSPDKYIRFGGPSGGVSFFQGTSVGAVSSSKASPDRLLSSHEALHLTPVTALASSEDGSLLLTGAVDGTCRLWAV 234
            M P+SPDKY+RFGGPS GVSFFQ    G  SSSKA+PDRLLSSHE+LHLT VTA A S DGSLLLTGA+DGTCRLW+V
Sbjct:  178 MLPKSPDKYLRFGGPSRGVSFFQTAGGGTASSSKATPDRLLSSHESLHLTAVTASACSVDGSLLLTGALDGTCRLWSV 255
[Close]
BLAST of mRNA_M-pyrifera_M_contig112561.2618.1 vs. uniprot
Match: D8LI41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI41_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.050e-29
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 MYPRSPDKYIRFGGPSGGVSFFQGTSVGAVSSSKASPDRLLSSHEALHLTPVTALASSEDGSLLLTGAVDGTCRLWAV 234
            M P+SPDKY+RFGGPS GVSFFQ    G  SSSKA+PDRLLSSHE+LHLT VTA A S DGSLLLTGA+DGTCRLW+V
Sbjct: 1163 MLPKSPDKYLRFGGPSRGVSFFQTAGGGTASSSKATPDRLLSSHESLHLTAVTAAACSVDGSLLLTGALDGTCRLWSV 1240
[Close]
BLAST of mRNA_M-pyrifera_M_contig112561.2618.1 vs. uniprot
Match: A0A835YWR3_9STRA (BEACH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.790e-10
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   19 DKYIRFGGPSGGVSFFQ-----GTSVGAVSSSKASPDRLLSSHEALHLTPVTALASSEDGSLLLTGAVDGTCRLWAV 234
            D+Y+RFGGPS GV+F+Q                A+PD LLS+H+ LH  P+T  A ++ G+ L TG  DG  R+W+V
Sbjct:  367 DEYVRFGGPSCGVAFYQIGXXXXXXXXXXXXXXAAPDALLSAHDGLHARPITCAAYADSGAALATGGGDGALRVWSV 443
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112561.2618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KXI6_9PHAE6.730e-3176.92BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LI41_ECTSI1.050e-2976.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YWR3_9STRA5.790e-1042.86BEACH domain-containing protein n=1 Tax=Tribonema ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112561contigM-pyrifera_M_contig112561:148..381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.5e-25
Seed eggNOG ortholog2880.D8LI41
KEGG koko:K22262
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aggrephagy
EggNOG OGsKOG1786@1,KOG1786@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size234
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.5003462-CDS-M-pyrifera_M_contig112561:147..3811622815639.5003462-CDS-M-pyrifera_M_contig112561:147..381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112561 148..381 +
1692277500.1631734-CDS-M-pyrifera_M_contig112561:147..3811692277500.1631734-CDS-M-pyrifera_M_contig112561:147..381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112561 148..381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112561.2618.1prot_M-pyrifera_M_contig112561.2618.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112561 148..381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112561.2618.1

>prot_M-pyrifera_M_contig112561.2618.1 ID=prot_M-pyrifera_M_contig112561.2618.1|Name=mRNA_M-pyrifera_M_contig112561.2618.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
MYPRSPDKYIRFGGPSGGVSFFQGTSVGAVSSSKASPDRLLSSHEALHLT
PVTALASSEDGSLLLTGAVDGTCRLWAV
back to top

mRNA from alignment at M-pyrifera_M_contig112561:148..381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112561.2618.1 ID=mRNA_M-pyrifera_M_contig112561.2618.1|Name=mRNA_M-pyrifera_M_contig112561.2618.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig112561:148..381+ (Macrocystis pyrifera P11B4 male)
ATGTACCCGCGCTCCCCCGACAAGTACATCCGGTTCGGTGGGCCCAGCGG
AGGCGTGTCTTTCTTCCAGGGGACCTCGGTGGGCGCCGTTTCGTCCTCCA
AGGCGTCGCCGGACAGGCTGCTGAGCTCGCACGAGGCGCTGCACCTGACC
CCTGTGACGGCCCTGGCCAGCTCGGAGGATGGGAGTCTGCTGCTGACGGG
AGCGGTGGACGGGACGTGTAGGCTGTGGGCTGTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112561:148..381+

>mRNA_M-pyrifera_M_contig112561.2618.1 ID=mRNA_M-pyrifera_M_contig112561.2618.1|Name=mRNA_M-pyrifera_M_contig112561.2618.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig112561:148..381+ (Macrocystis pyrifera P11B4 male)
ATGTACCCGCGCTCCCCCGACAAGTACATCCGGTTCGGTGGGCCCAGCGG
AGGCGTGTCTTTCTTCCAGGGGACCTCGGTGGGCGCCGTTTCGTCCTCCA
AGGCGTCGCCGGACAGGCTGCTGAGCTCGCACGAGGCGCTGCACCTGACC
CCTGTGACGGCCCTGGCCAGCTCGGAGGATGGGAGTCTGCTGCTGACGGG
AGCGGTGGACGGGACGTGTAGGCTGTGGGCTGTTATGTACCCGCGCTCCC
CCGACAAGTACATCCGGTTCGGTGGGCCCAGCGGAGGCGTGTCTTTCTTC
CAGGGGACCTCGGTGGGCGCCGTTTCGTCCTCCAAGGCGTCGCCGGACAG
GCTGCTGAGCTCGCACGAGGCGCTGCACCTGACCCCTGTGACGGCCCTGG
CCAGCTCGGAGGATGGGAGTCTGCTGCTGACGGGAGCGGTGGACGGGACG
TGTAGGCTGTGGGCTGTT
back to top