mRNA_M-pyrifera_M_contig112547.2617.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112547.2617.1
Unique NamemRNA_M-pyrifera_M_contig112547.2617.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig112547.2617.1 vs. uniprot
Match: D8LNT7_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNT7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 3.720e-21
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 LLAKDVIDPALRAFAVTNLDKDPHSGTWDWRINIGAIHRSMGVLAQFDSGR 153
            LLAKD++DPALRAFAVTNLDKDP SG W WRINI AI RSMGVLAQFDSG+
Sbjct:  257 LLAKDIVDPALRAFAVTNLDKDPASGGWAWRINIDAIQRSMGVLAQFDSGK 307
[Close]
BLAST of mRNA_M-pyrifera_M_contig112547.2617.1 vs. uniprot
Match: A0A836CHF5_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.540e-11
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 LLAKDVIDPALRAFAVTNLDKDPHS-GTWDWRINIGAIHRSMGVLAQFD 144
            LL KD++DP +RAFAVTNL+KD  + G W WRIN+ AIH+ +  LAQF+
Sbjct:  240 LLEKDIVDPMIRAFAVTNLEKDEGAAGGWGWRINVPAIHKGLSGLAQFE 288
[Close]
BLAST of mRNA_M-pyrifera_M_contig112547.2617.1 vs. uniprot
Match: A0A7S0N0H8_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N0H8_9CRYP)

HSP 1 Score: 54.3 bits (129), Expect = 6.810e-8
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 LLAKDVIDPALRAFAVTNLDKDPHSGTWDWRINIGAIHRSMGVLAQFDSGR 153
            LLA  + DPALRAFA+TNL +      W+WRI +G I R++G++  FD G+
Sbjct:    4 LLAAAMPDPALRAFALTNLARQGDG--WEWRIGVGPIRRNLGLIGGFDLGQ 52
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112547.2617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNT7_ECTSI3.720e-2184.31AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A836CHF5_9STRA2.540e-1159.18Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A7S0N0H8_9CRYP6.810e-849.02Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112547contigM-pyrifera_M_contig112547:215..367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue4.9e-17
Seed eggNOG ortholog2880.D8LNT7
KEGG koko:K13703
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.hydrolase activity, acting on ester bonds
EggNOG OGsCOG0596@1,KOG2382@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.4616404-CDS-M-pyrifera_M_contig112547:214..3671622815639.4616404-CDS-M-pyrifera_M_contig112547:214..367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112547 215..367 -
1692277500.15017-CDS-M-pyrifera_M_contig112547:214..3671692277500.15017-CDS-M-pyrifera_M_contig112547:214..367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112547 215..367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112547.2617.1prot_M-pyrifera_M_contig112547.2617.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112547 215..367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112547.2617.1

>prot_M-pyrifera_M_contig112547.2617.1 ID=prot_M-pyrifera_M_contig112547.2617.1|Name=mRNA_M-pyrifera_M_contig112547.2617.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
LLAKDVIDPALRAFAVTNLDKDPHSGTWDWRINIGAIHRSMGVLAQFDSG
R
back to top

mRNA from alignment at M-pyrifera_M_contig112547:215..367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112547.2617.1 ID=mRNA_M-pyrifera_M_contig112547.2617.1|Name=mRNA_M-pyrifera_M_contig112547.2617.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig112547:215..367- (Macrocystis pyrifera P11B4 male)
CTTTTGGCGAAGGACGTGATCGACCCAGCCCTTCGAGCTTTCGCGGTGAC
TAACCTCGATAAGGATCCCCATTCGGGGACGTGGGATTGGAGGATCAACA
TCGGCGCTATCCACCGCTCGATGGGGGTGCTCGCGCAGTTTGACTCTGGG
AGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112547:215..367-

>mRNA_M-pyrifera_M_contig112547.2617.1 ID=mRNA_M-pyrifera_M_contig112547.2617.1|Name=mRNA_M-pyrifera_M_contig112547.2617.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig112547:215..367- (Macrocystis pyrifera P11B4 male)
CTTTTGGCGAAGGACGTGATCGACCCAGCCCTTCGAGCTTTCGCGGTGAC
TAACCTCGATAAGGATCCCCATTCGGGGACGTGGGATTGGAGGATCAACA
TCGGCGCTATCCACCGCTCGATGGGGGTGCTCGCGCAGTTTGACTCTGGG
AGGCTTTTGGCGAAGGACGTGATCGACCCAGCCCTTCGAGCTTTCGCGGT
GACTAACCTCGATAAGGATCCCCATTCGGGGACGTGGGATTGGAGGATCA
ACATCGGCGCTATCCACCGCTCGATGGGGGTGCTCGCGCAGTTTGACTCT
GGGAGG
back to top