mRNA_M-pyrifera_M_contig112477.2614.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112477.2614.1
Unique NamemRNA_M-pyrifera_M_contig112477.2614.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Match: A0A518A2D2_9PLAN (Neutral ceramidase n=9 Tax=Gimesia TaxID=1649453 RepID=A0A518A2D2_9PLAN)

HSP 1 Score: 275 bits (702), Expect = 7.520e-89
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 1
Query:    1 YRNRWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGMPANRWSDEIEDKIVESAQRQVEKVRNGK 399
            YR RWG RLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEED+PPRKSSRWGYEGNTSMAVYG+PANRWSDEIEDKIVESA+RQVEKVRNGK
Sbjct:  342 YRTRWGTRLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDIPPRKSSRWGYEGNTSMAVYGLPANRWSDEIEDKIVESAKRQVEKVRNGK 474          
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Match: A0A517RBL5_9PLAN (Neutral ceramidase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RBL5_9PLAN)

HSP 1 Score: 261 bits (667), Expect = 1.400e-83
Identity = 121/133 (90.98%), Postives = 128/133 (96.24%), Query Frame = 1
Query:    1 YRNRWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGMPANRWSDEIEDKIVESAQRQVEKVRNGK 399
            YR RWG+RLLKQLNSGKPF TSYPFPVQVW +GK QLWITIGGEVVVDYALGMKK FGDSTW+AGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYG+PANRWS+EIEDKIVESA+RQV+KVRNGK
Sbjct:  342 YRTRWGSRLLKQLNSGKPFMTSYPFPVQVWRLGKTQLWITIGGEVVVDYALGMKKEFGDSTWVAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGLPANRWSEEIEDKIVESARRQVKKVRNGK 474          
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Match: A0A350K697_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K697_9PLAN)

HSP 1 Score: 244 bits (624), Expect = 1.540e-81
Identity = 113/133 (84.96%), Postives = 123/133 (92.48%), Query Frame = 1
Query:    1 YRNRWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGMPANRWSDEIEDKIVESAQRQVEKVRNGK 399
            Y  RWG RLLK+LN+G+ F TSYPFPVQVW +GK QLWITIGGEVVVDY+LGMKK FG +TW+AGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSM VYG+PANRWSDEIEDKIVESA+RQV+KVRNGK
Sbjct:   10 YVTRWGTRLLKELNAGETFITSYPFPVQVWQLGKTQLWITIGGEVVVDYSLGMKKEFGPNTWVAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMMVYGLPANRWSDEIEDKIVESARRQVKKVRNGK 142          
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Match: A0A2E2C6Q2_9PLAN (Ceramidase_alk domain-containing protein n=10 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C6Q2_9PLAN)

HSP 1 Score: 248 bits (633), Expect = 2.160e-78
Identity = 115/133 (86.47%), Postives = 123/133 (92.48%), Query Frame = 1
Query:    1 YRNRWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGMPANRWSDEIEDKIVESAQRQVEKVRNGK 399
            Y  RWG RLLK+LN GK F TSYPFPVQVWL+GK QLWITIGGEVVVDY+LGMKK FG +TW+AGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSM VYG+PANRWS+EIEDKIVESA+RQVEKVRNGK
Sbjct:  342 YVTRWGTRLLKELNDGKTFITSYPFPVQVWLLGKTQLWITIGGEVVVDYSLGMKKEFGPNTWVAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMMVYGLPANRWSEEIEDKIVESARRQVEKVRNGK 474          
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Match: A0A517W1B5_9PLAN (Neutral/alkaline non-lysosomal ceramidase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W1B5_9PLAN)

HSP 1 Score: 207 bits (526), Expect = 1.500e-62
Identity = 97/133 (72.93%), Postives = 111/133 (83.46%), Query Frame = 1
Query:    1 YRNRWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGMPANRWSDEIEDKIVESAQRQVEKVRNGK 399
            YR RWG+RLLKQLNSGKPF  SYPFPV+VW +GK+QLWI IGGEVV+DYAL MKK +G  TW+ GY NDVMAYTPSLRVL+E          GYEGNTSMAVYGMP++RWS+EIEDKIVES QRQV+K+R+GK
Sbjct:  342 YRTRWGSRLLKQLNSGKPFIKSYPFPVEVWRLGKKQLWIAIGGEVVIDYALAMKKEYGPDTWVTGYANDVMAYTPSLRVLKEG---------GYEGNTSMAVYGMPSHRWSEEIEDKIVESVQRQVKKIRDGK 465          
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Match: A0A1P8WGM0_9PLAN (Neutral ceramidase n=2 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WGM0_9PLAN)

HSP 1 Score: 196 bits (497), Expect = 3.660e-58
Identity = 82/133 (61.65%), Postives = 108/133 (81.20%), Query Frame = 1
Query:    1 YRNRWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGMPANRWSDEIEDKIVESAQRQVEKVRNGK 399
            Y NRW ARLLK + +GKP   +YP+P+Q W +G++Q WIT+GGEVVVDYALG KK +GD TW+A YCNDVMAY PSLRVL+ED+PPRKS+RWGYEGN SM VYG  A+RW+D+IE+ + ++ +R +E+++  K
Sbjct:  332 YVNRWAARLLKDVEAGKPLEHTYPYPLQAWKLGEKQKWITMGGEVVVDYALGFKKSYGDDTWVASYCNDVMAYIPSLRVLDEDIPPRKSARWGYEGNRSMMVYGRAAHRWADDIEELVADTVERLMERLKTKK 464          
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Match: A0A2E5EFK2_9BACT (Ceramidase_alk domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E5EFK2_9BACT)

HSP 1 Score: 183 bits (464), Expect = 2.340e-53
Identity = 82/133 (61.65%), Postives = 102/133 (76.69%), Query Frame = 1
Query:    1 YRNRWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGMPANRWSDEIEDKIVESAQRQVEKVRNGK 399
            YR RW  RLLK+++ GKPF   YPFP+Q W +G  QLW T+GGEVVVDY+L  K  +G  TW+AGYCNDVMAY PS RVL ED+PPR S RWGYEG+TSMAVYGMPA+RW  ++ED+I  +A+R  E++ + K
Sbjct:  331 YRGRWARRLLKEMDEGKPFIKEYPFPLQAWRLGS-QLWFTMGGEVVVDYSLRFKNEYGPQTWVAGYCNDVMAYIPSHRVLVEDIPPRHSRRWGYEGSTSMAVYGMPAHRWKADVEDRIGFAARRLYEQLNSDK 462          
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Match: A0A518CPH3_9PLAN (Neutral ceramidase n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CPH3_9PLAN)

HSP 1 Score: 169 bits (427), Expect = 8.030e-48
Identity = 76/130 (58.46%), Postives = 96/130 (73.85%), Query Frame = 1
Query:    1 YRNRWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGMPANRWSDEIEDKIVESAQRQVEKVR 390
            Y+ RW +RLLK++  G  F TSYP P+Q W +G +QLW+TIGGEV VDY+LG KKMFG  TW+AGYCNDV AY PSLRVLEED       + GYEG++SM VYG+PA RW+D++ED+I       V++VR
Sbjct:  345 YQKRWASRLLKEMEDGTTFVTSYPLPIQAWELGDQQLWLTIGGEVTVDYSLGFKKMFGKQTWVAGYCNDVPAYIPSLRVLEED-----KVKMGYEGHSSMMVYGLPAFRWADDVEDQIANGMTELVKQVR 469          
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Match: A0A2A2QEJ0_9BACT (Ceramidase_alk domain-containing protein n=1 Tax=Opitutae bacterium Tous-C1TDCM TaxID=1982319 RepID=A0A2A2QEJ0_9BACT)

HSP 1 Score: 167 bits (422), Expect = 4.060e-47
Identity = 78/127 (61.42%), Postives = 92/127 (72.44%), Query Frame = 1
Query:   10 RWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGMPANRWSDEIEDKIVESAQRQVEKVR 390
            RW  RL  +L +GK    SY +PVQVW +G+ +LWI +GGEVVVDYAL  KK FG STW+AGY NDVMAY PS RVL ED PPR + R GYEGNTSM VYG PA+ W+D++ED I  S  R V +VR
Sbjct:  338 RWAGRLKAELQAGKTLPRSYQYPVQVWRLGEDRLWIALGGEVVVDYALRFKKEFGPSTWVAGYANDVMAYIPSARVLAEDRPPRTNGRPGYEGNTSMYVYGQPAHTWADDVEDTIAASVHRLVGEVR 464          
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Match: A0A2E0SMA9_9PLAN (Ceramidase_alk domain-containing protein n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E0SMA9_9PLAN)

HSP 1 Score: 165 bits (417), Expect = 2.750e-46
Identity = 75/130 (57.69%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    1 YRNRWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYALGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSMAVYGMPANRWSDEIEDKIVESAQRQVEKVR 390
            Y+ RW  RLL ++N+G  F TSYP P+Q W +G +QLW+TIGGEV VDYAL +KKMFG+  W+AGYCNDV AY PSLRVL+ED       R GYEG++SM VYGMPA RW+D IE++I++     V++V+
Sbjct:  352 YQRRWAQRLLDEMNAGDAFITSYPLPLQAWELGDKQLWLTIGGEVTVDYALVLKKMFGNDIWVAGYCNDVPAYIPSLRVLDED-----KHRLGYEGHSSMMVYGMPAMRWADSIENEIIDGMSELVKQVQ 476          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112477.2614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518A2D2_9PLAN7.520e-8996.24Neutral ceramidase n=9 Tax=Gimesia TaxID=1649453 R... [more]
A0A517RBL5_9PLAN1.400e-8390.98Neutral ceramidase n=2 Tax=Gimesia TaxID=1649453 R... [more]
A0A350K697_9PLAN1.540e-8184.96Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A2E2C6Q2_9PLAN2.160e-7886.47Ceramidase_alk domain-containing protein n=10 Tax=... [more]
A0A517W1B5_9PLAN1.500e-6272.93Neutral/alkaline non-lysosomal ceramidase n=2 Tax=... [more]
A0A1P8WGM0_9PLAN3.660e-5861.65Neutral ceramidase n=2 Tax=Fuerstiella marisgerman... [more]
A0A2E5EFK2_9BACT2.340e-5361.65Ceramidase_alk domain-containing protein n=1 Tax=V... [more]
A0A518CPH3_9PLAN8.030e-4858.46Neutral ceramidase n=1 Tax=Polystyrenella longa Ta... [more]
A0A2A2QEJ0_9BACT4.060e-4761.42Ceramidase_alk domain-containing protein n=1 Tax=O... [more]
A0A2E0SMA9_9PLAN2.750e-4657.69Ceramidase_alk domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112477contigM-pyrifera_M_contig112477:182..583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score245.0
Seed ortholog evalue2e-62
Seed eggNOG ortholog344747.PM8797T_17834
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Neutral/alkaline non-lysosomal ceramidase, N-terminal
EggNOG OGs2IX5S@203682,COG3356@1,COG3356@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.029761-CDS-M-pyrifera_M_contig112477:181..5831622815639.029761-CDS-M-pyrifera_M_contig112477:181..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112477 182..583 -
1692277499.8360815-CDS-M-pyrifera_M_contig112477:181..5831692277499.8360815-CDS-M-pyrifera_M_contig112477:181..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112477 182..583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112477.2614.1prot_M-pyrifera_M_contig112477.2614.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112477 182..583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112477.2614.1

>prot_M-pyrifera_M_contig112477.2614.1 ID=prot_M-pyrifera_M_contig112477.2614.1|Name=mRNA_M-pyrifera_M_contig112477.2614.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
YRNRWGARLLKQLNSGKPFRTSYPFPVQVWLMGKRQLWITIGGEVVVDYA
LGMKKMFGDSTWIAGYCNDVMAYTPSLRVLEEDVPPRKSSRWGYEGNTSM
AVYGMPANRWSDEIEDKIVESAQRQVEKVRNGK*
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mRNA from alignment at M-pyrifera_M_contig112477:182..583-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112477.2614.1 ID=mRNA_M-pyrifera_M_contig112477.2614.1|Name=mRNA_M-pyrifera_M_contig112477.2614.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig112477:182..583- (Macrocystis pyrifera P11B4 male)
TATCGTAACCGCTGGGGCGCCCGCCTGCTCAAGCAACTCAACTCGGGTAA ACCGTTCCGGACCTCCTATCCCTTCCCGGTTCAGGTCTGGCTGATGGGCA AGCGACAGCTCTGGATCACCATCGGTGGTGAGGTTGTCGTCGACTACGCC CTGGGAATGAAAAAGATGTTTGGCGACAGTACCTGGATCGCAGGCTACTG TAACGATGTGATGGCCTATACTCCTTCTCTCCGTGTTCTGGAAGAAGACG TGCCTCCCCGCAAGTCATCCCGCTGGGGCTACGAAGGCAACACATCGATG GCCGTCTATGGAATGCCCGCCAACCGCTGGTCCGACGAAATTGAAGACAA AATCGTCGAGAGTGCCCAGCGACAGGTCGAGAAGGTCCGCAATGGAAAAT AG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112477:182..583-

>mRNA_M-pyrifera_M_contig112477.2614.1 ID=mRNA_M-pyrifera_M_contig112477.2614.1|Name=mRNA_M-pyrifera_M_contig112477.2614.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig112477:182..583- (Macrocystis pyrifera P11B4 male)
TATCGTAACCGCTGGGGCGCCCGCCTGCTCAAGCAACTCAACTCGGGTAA
ACCGTTCCGGACCTCCTATCCCTTCCCGGTTCAGGTCTGGCTGATGGGCA
AGCGACAGCTCTGGATCACCATCGGTGGTGAGGTTGTCGTCGACTACGCC
CTGGGAATGAAAAAGATGTTTGGCGACAGTACCTGGATCGCAGGCTACTG
TAACGATGTGATGGCCTATACTCCTTCTCTCCGTGTTCTGGAAGAAGACG
TGCCTCCCCGCAAGTCATCCCGCTGGGGCTACGAAGGCAACACATCGATG
GCCGTCTATGGAATGCCCGCCAACCGCTGGTCCGACGAAATTGAAGACAA
AATCGTCGAGAGTGCCCAGCGACAGGTCGAGAAGGTCCGCAATGGAAAAT
AGTATCGTAACCGCTGGGGCGCCCGCCTGCTCAAGCAACTCAACTCGGGT
AAACCGTTCCGGACCTCCTATCCCTTCCCGGTTCAGGTCTGGCTGATGGG
CAAGCGACAGCTCTGGATCACCATCGGTGGTGAGGTTGTCGTCGACTACG
CCCTGGGAATGAAAAAGATGTTTGGCGACAGTACCTGGATCGCAGGCTAC
TGTAACGATGTGATGGCCTATACTCCTTCTCTCCGTGTTCTGGAAGAAGA
CGTGCCTCCCCGCAAGTCATCCCGCTGGGGCTACGAAGGCAACACATCGA
TGGCCGTCTATGGAATGCCCGCCAACCGCTGGTCCGACGAAATTGAAGAC
AAAATCGTCGAGAGTGCCCAGCGACAGGTCGAGAAGGTCCGCAATGGAAA
ATAG
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