mRNA_M-pyrifera_M_contig112475.2613.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112475.2613.1
Unique NamemRNA_M-pyrifera_M_contig112475.2613.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Match: A0A517Q3Z4_9PLAN (Glutamate dehydrogenase n=14 Tax=Planctomycetaceae TaxID=126 RepID=A0A517Q3Z4_9PLAN)

HSP 1 Score: 390 bits (1002), Expect = 4.360e-132
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1
Query:    1 SLDDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 582
            SLDDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG
Sbjct:   91 SLDDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 284          
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Match: A0A517X8N3_9PLAN (Glutamate dehydrogenase n=4 Tax=Gimesia TaxID=1649453 RepID=A0A517X8N3_9PLAN)

HSP 1 Score: 380 bits (977), Expect = 2.630e-128
Identity = 188/193 (97.41%), Postives = 191/193 (98.96%), Query Frame = 1
Query:    4 LDDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 582
            LDDVKLAAKAVEAGAQDYLVKTQLSRTSL RS+RYAIERTRVRDAEWDSPMFRLAQRQFLKAAQ+MGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLT HELQRLTRRFATEISPIIGP+KDIPAPDMG
Sbjct:   92 LDDVKLAAKAVEAGAQDYLVKTQLSRTSLIRSMRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQFMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTSHELQRLTRRFATEISPIIGPDKDIPAPDMG 284          
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Match: A0A5M6D667_9BACT (Response regulator n=1 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6D667_9BACT)

HSP 1 Score: 353 bits (905), Expect = 1.980e-117
Identity = 174/193 (90.16%), Postives = 184/193 (95.34%), Query Frame = 1
Query:    4 LDDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 582
            LDDV++AAKAVEAGAQDYLVK QLSR++LTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQ MGLDDNIRQRLLFP+R LVVT PFRRD Y+EVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALV LPFGGAKGGVR+DPTGLT HELQRLTRRFA+EI  +IGP+KDIPAPDMG
Sbjct:   92 LDDVRIAAKAVEAGAQDYLVKNQLSRSTLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQLMGLDDNIRQRLLFPERNLVVTFPFRRDQYSEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVGLPFGGAKGGVRMDPTGLTSHELQRLTRRFASEIHLMIGPDKDIPAPDMG 284          
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Match: A0A3E0Q8Z5_9BACT (Response regulator (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q8Z5_9BACT)

HSP 1 Score: 316 bits (809), Expect = 3.520e-103
Identity = 154/193 (79.79%), Postives = 168/193 (87.05%), Query Frame = 1
Query:    4 LDDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 582
            +DD+ LAAKAVE GAQ YLVK +L    L R+LRYAI+RT    AEW SPMFRLAQ+QFLKAAQ MGLDDN+R+RLLFPQRTL VT PFRRD Y EVETVFGYRVQH+LTMGPTKGGIRYH+DVSLGEVSALAMWM+WKC L+ LPFGGAKGGVRIDPT LTGHELQRLTRR+ TEI  +IGPEKDIPAPDMG
Sbjct:   74 MDDLNLAAKAVEEGAQSYLVKGRLDGNRLARALRYAIQRTEAEQAEWRSPMFRLAQQQFLKAAQIMGLDDNLRERLLFPQRTLAVTFPFRRDDYLEVETVFGYRVQHLLTMGPTKGGIRYHEDVSLGEVSALAMWMTWKCGLMRLPFGGAKGGVRIDPTILTGHELQRLTRRYTTEILDMIGPEKDIPAPDMG 266          
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Match: A0A6G2JJY5_9BACT (Response regulator n=6 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6G2JJY5_9BACT)

HSP 1 Score: 310 bits (795), Expect = 6.650e-101
Identity = 151/193 (78.24%), Postives = 170/193 (88.08%), Query Frame = 1
Query:    4 LDDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 582
            LDDV LAA AVEAGAQDY+VKTQ + T L+RS+ YA+ER R R  EWDS MF+LAQ+QFLKAAQ MGLD+NIR+RLLFPQRT +VTLPFRRD Y  VE VFGYRVQH+LTMGPTKGGIRYH+DV+LGEVSALAMWM+WKCAL++LPFGGAKGGVRIDPT L+  ELQRLTRRF +EI  IIGP+KDIPAPDMG
Sbjct:   88 LDDVSLAATAVEAGAQDYIVKTQANTTLLSRSIHYAMERVRARSGEWDSAMFKLAQQQFLKAAQIMGLDENIRERLLFPQRTHIVTLPFRRDEYHLVENVFGYRVQHLLTMGPTKGGIRYHEDVNLGEVSALAMWMTWKCALINLPFGGAKGGVRIDPTDLSRRELQRLTRRFTSEIIDIIGPDKDIPAPDMG 280          
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Match: A0A2E3J1S5_9BACT (Glutamate dehydrogenase n=2 Tax=FCB group TaxID=1783270 RepID=A0A2E3J1S5_9BACT)

HSP 1 Score: 310 bits (794), Expect = 9.670e-101
Identity = 150/194 (77.32%), Postives = 172/194 (88.66%), Query Frame = 1
Query:    1 SLDDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 582
            SLDDV LAA+AVE+GAQDYLVK Q++   L RS+RYAIER++ + AEWDSPMFRLAQ+QFLKAAQ M LDDNIRQRLLFPQRT VVT PF RD + +VETV GYR+QH LTMGPTKGG+RYHQDV+LGEVSALAMWM+WKCAL++LPFGGAKGGVRIDPTGL+  ELQR+TRR+ +EI  +IGPEKDIPAPDMG
Sbjct:   88 SLDDVTLAARAVESGAQDYLVKAQINSALLVRSIRYAIERSKAQHAEWDSPMFRLAQQQFLKAAQLMDLDDNIRQRLLFPQRTHVVTFPFXRDLHNQVETVAGYRIQHXLTMGPTKGGVRYHQDVNLGEVSALAMWMTWKCALMNLPFGGAKGGVRIDPTGLSRRELQRVTRRYTSEIIDVIGPEKDIPAPDMG 281          
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Match: A0A368KWD4_9BACT (Response regulator n=3 Tax=Blastopirellula TaxID=265487 RepID=A0A368KWD4_9BACT)

HSP 1 Score: 310 bits (793), Expect = 1.290e-100
Identity = 149/192 (77.60%), Postives = 168/192 (87.50%), Query Frame = 1
Query:    7 DDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 582
            DD  LAAKAVEAGAQDYL+K ++    L R+LR A++RT     EW+SPM  LAQ+QFLKAAQ MGLD+N+R+RLLFPQRTLVVTLPFRRD+YT+VETVFGYRVQH+LTMGPTKGGIRYH+DV LGEVSALAMWMSWKCAL+ LPFGGAKGGVRIDPT LTGHELQRLTRR+  EI  +IGP+KDIPAPDMG
Sbjct:   88 DDWSLAAKAVEAGAQDYLIKGKIDGNRLARALRLAVKRTHAEQQEWNSPMLHLAQQQFLKAAQIMGLDENLRERLLFPQRTLVVTLPFRRDNYTQVETVFGYRVQHLLTMGPTKGGIRYHEDVGLGEVSALAMWMSWKCALMRLPFGGAKGGVRIDPTELTGHELQRLTRRYTMEIIDMIGPDKDIPAPDMG 279          
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Match: A0A7V9A7F1_9BACT (Chemotaxis response regulator protein-glutamate methylesterase n=4 Tax=Pirellulaceae TaxID=2691357 RepID=A0A7V9A7F1_9BACT)

HSP 1 Score: 308 bits (790), Expect = 3.660e-100
Identity = 150/192 (78.12%), Postives = 166/192 (86.46%), Query Frame = 1
Query:    7 DDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 582
            DD+ LAAKAVEAGAQDYLVK ++    L RSLR A++RT     EW+SPM  LAQ+QFLKAAQ M LD+N+R+RLLFPQRTLVVTLPFRRD Y+ VETVFGYRVQH+LTMGPTKGGIRYH+DV LGEVSALAMWMSWKCAL+ LPFGGAKGGVRIDPT LTGHELQRLTRR+  EI  +IGPEKDIPAPDMG
Sbjct:   88 DDLSLAAKAVEAGAQDYLVKGKIDGHRLARSLRLAVKRTHAEQQEWNSPMLHLAQQQFLKAAQIMSLDENLRERLLFPQRTLVVTLPFRRDRYSHVETVFGYRVQHLLTMGPTKGGIRYHEDVGLGEVSALAMWMSWKCALMRLPFGGAKGGVRIDPTDLTGHELQRLTRRYTMEIIEMIGPEKDIPAPDMG 279          
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Match: A0A231N1E9_9GAMM (NADP-specific glutamate dehydrogenase n=4 Tax=Zobellella TaxID=347533 RepID=A0A231N1E9_9GAMM)

HSP 1 Score: 307 bits (787), Expect = 1.090e-99
Identity = 148/194 (76.29%), Postives = 169/194 (87.11%), Query Frame = 1
Query:    1 SLDDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 582
            SLDDVKLAA+AVE+GA DYLVK+ L  T+L+RS+RY + R R R  EWDSPMFRLAQ+QFLKAAQYM LDDNIRQRLLFPQRT VV+ PF RD  ++VETVFGYRVQH+L+MGPTKGGIRYHQDV LGEV+ALAMWM+WKCAL+ LPFGGAKGGVR+DPT L+  ELQRLTRR+  EI  IIGP++DIPAPDMG
Sbjct:   88 SLDDVKLAARAVESGAYDYLVKSNLKSTALSRSIRYTLSRARARGGEWDSPMFRLAQQQFLKAAQYMDLDDNIRQRLLFPQRTQVVSFPFFRDDRSQVETVFGYRVQHVLSMGPTKGGIRYHQDVDLGEVAALAMWMTWKCALMKLPFGGAKGGVRVDPTSLSKRELQRLTRRYTAEIIDIIGPDRDIPAPDMG 281          
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Match: A0A5B9MCH0_9BACT (Glutamate dehydrogenase n=4 Tax=Planctomycetes TaxID=203682 RepID=A0A5B9MCH0_9BACT)

HSP 1 Score: 307 bits (786), Expect = 1.460e-99
Identity = 147/192 (76.56%), Postives = 168/192 (87.50%), Query Frame = 1
Query:    7 DDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDSPMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVETVFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGGAKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG 582
            DD+ LAAKAVE GA+ YLVK ++    L R+LRYAI+RT    AEW SPM++LA++QFLKAAQ +GLDDN+R+RLLFPQRT+ VT PFRRD Y EVETVFGYRVQH+LTMGPTKGG+RYH+DVSLGEVSALAMWM+WKCAL+ LPFGGAKGGVRIDPT LTGHELQRLTRRF TEI  +IGP+KDIPAPDMG
Sbjct:   88 DDLTLAAKAVEEGAEAYLVKGKIDANRLARALRYAIQRTAAEQAEWQSPMYQLAKQQFLKAAQIVGLDDNLRERLLFPQRTMTVTFPFRRDDYQEVETVFGYRVQHLLTMGPTKGGLRYHEDVSLGEVSALAMWMTWKCALMRLPFGGAKGGVRIDPTILTGHELQRLTRRFTTEILDMIGPDKDIPAPDMG 279          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112475.2613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517Q3Z4_9PLAN4.360e-132100.00Glutamate dehydrogenase n=14 Tax=Planctomycetaceae... [more]
A0A517X8N3_9PLAN2.630e-12897.41Glutamate dehydrogenase n=4 Tax=Gimesia TaxID=1649... [more]
A0A5M6D667_9BACT1.980e-11790.16Response regulator n=1 Tax=Roseiconus nitratireduc... [more]
A0A3E0Q8Z5_9BACT3.520e-10379.79Response regulator (Fragment) n=1 Tax=Planctomycet... [more]
A0A6G2JJY5_9BACT6.650e-10178.24Response regulator n=6 Tax=Gemmatimonadetes bacter... [more]
A0A2E3J1S5_9BACT9.670e-10177.32Glutamate dehydrogenase n=2 Tax=FCB group TaxID=17... [more]
A0A368KWD4_9BACT1.290e-10077.60Response regulator n=3 Tax=Blastopirellula TaxID=2... [more]
A0A7V9A7F1_9BACT3.660e-10078.13Chemotaxis response regulator protein-glutamate me... [more]
A0A231N1E9_9GAMM1.090e-9976.29NADP-specific glutamate dehydrogenase n=4 Tax=Zobe... [more]
A0A5B9MCH0_9BACT1.460e-9976.56Glutamate dehydrogenase n=4 Tax=Planctomycetes Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112475contigM-pyrifera_M_contig112475:3..584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score383.6
Seed ortholog evalue5.3e-104
Seed eggNOG ortholog344747.PM8797T_15421
KEGG rclassRC00006,RC02799
KEGG koko:K00261,ko:K00262
KEGG ReactionR00243,R00248
KEGG Pathwayko00220,ko00250,ko00471,ko00910,ko01100,ko01200,ko04217,ko04964,map00220,map00250,map00471,map00910,map01100,map01200,map04217,map04964
KEGG ModuleM00740
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the Glu Leu Phe Val dehydrogenases family
EggNOG OGs2IWWC@203682,COG0334@1,COG0334@2
EC1.4.1.3,1.4.1.4
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size582
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.9840667-CDS-M-pyrifera_M_contig112475:2..5841622815638.9840667-CDS-M-pyrifera_M_contig112475:2..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112475 3..584 +
1692277499.8256378-CDS-M-pyrifera_M_contig112475:2..5841692277499.8256378-CDS-M-pyrifera_M_contig112475:2..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112475 3..584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112475.2613.1prot_M-pyrifera_M_contig112475.2613.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112475 3..584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112475.2613.1

>prot_M-pyrifera_M_contig112475.2613.1 ID=prot_M-pyrifera_M_contig112475.2613.1|Name=mRNA_M-pyrifera_M_contig112475.2613.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
SLDDVKLAAKAVEAGAQDYLVKTQLSRTSLTRSLRYAIERTRVRDAEWDS
PMFRLAQRQFLKAAQYMGLDDNIRQRLLFPQRTLVVTLPFRRDHYTEVET
VFGYRVQHILTMGPTKGGIRYHQDVSLGEVSALAMWMSWKCALVHLPFGG
AKGGVRIDPTGLTGHELQRLTRRFATEISPIIGPEKDIPAPDMG
back to top

mRNA from alignment at M-pyrifera_M_contig112475:3..584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112475.2613.1 ID=mRNA_M-pyrifera_M_contig112475.2613.1|Name=mRNA_M-pyrifera_M_contig112475.2613.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig112475:3..584+ (Macrocystis pyrifera P11B4 male)
AGCCTGGATGATGTGAAACTGGCTGCGAAAGCCGTTGAGGCTGGAGCCCA GGATTATCTGGTTAAGACACAGCTGAGCCGAACTTCGCTAACTCGTTCTT TGCGTTATGCGATCGAGCGGACACGTGTGCGGGATGCCGAATGGGATTCG CCGATGTTCAGGCTGGCGCAGCGACAGTTCCTCAAGGCGGCTCAATATAT GGGGCTGGACGATAATATTCGCCAGCGATTATTGTTTCCGCAACGAACGC TGGTCGTGACGCTGCCATTTCGTCGAGATCATTATACCGAAGTCGAAACG GTATTCGGCTATCGAGTACAGCACATTCTGACTATGGGACCTACCAAGGG GGGGATTCGATATCATCAGGATGTCAGCCTCGGAGAAGTTTCAGCATTGG CGATGTGGATGAGCTGGAAGTGTGCCCTGGTGCACCTGCCCTTTGGTGGA GCCAAAGGGGGCGTACGCATCGATCCCACGGGGTTAACCGGTCATGAACT GCAACGTCTCACCCGACGATTTGCAACCGAAATCAGCCCGATTATTGGAC CTGAGAAAGACATTCCGGCTCCTGATATGGGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112475:3..584+

>mRNA_M-pyrifera_M_contig112475.2613.1 ID=mRNA_M-pyrifera_M_contig112475.2613.1|Name=mRNA_M-pyrifera_M_contig112475.2613.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig112475:3..584+ (Macrocystis pyrifera P11B4 male)
AGCCTGGATGATGTGAAACTGGCTGCGAAAGCCGTTGAGGCTGGAGCCCA
GGATTATCTGGTTAAGACACAGCTGAGCCGAACTTCGCTAACTCGTTCTT
TGCGTTATGCGATCGAGCGGACACGTGTGCGGGATGCCGAATGGGATTCG
CCGATGTTCAGGCTGGCGCAGCGACAGTTCCTCAAGGCGGCTCAATATAT
GGGGCTGGACGATAATATTCGCCAGCGATTATTGTTTCCGCAACGAACGC
TGGTCGTGACGCTGCCATTTCGTCGAGATCATTATACCGAAGTCGAAACG
GTATTCGGCTATCGAGTACAGCACATTCTGACTATGGGACCTACCAAGGG
GGGGATTCGATATCATCAGGATGTCAGCCTCGGAGAAGTTTCAGCATTGG
CGATGTGGATGAGCTGGAAGTGTGCCCTGGTGCACCTGCCCTTTGGTGGA
GCCAAAGGGGGCGTACGCATCGATCCCACGGGGTTAACCGGTCATGAACT
GCAACGTCTCACCCGACGATTTGCAACCGAAATCAGCCCGATTATTGGAC
CTGAGAAAGACATTCCGGCTCCTGATATGGGAAGCCTGGATGATGTGAAA
CTGGCTGCGAAAGCCGTTGAGGCTGGAGCCCAGGATTATCTGGTTAAGAC
ACAGCTGAGCCGAACTTCGCTAACTCGTTCTTTGCGTTATGCGATCGAGC
GGACACGTGTGCGGGATGCCGAATGGGATTCGCCGATGTTCAGGCTGGCG
CAGCGACAGTTCCTCAAGGCGGCTCAATATATGGGGCTGGACGATAATAT
TCGCCAGCGATTATTGTTTCCGCAACGAACGCTGGTCGTGACGCTGCCAT
TTCGTCGAGATCATTATACCGAAGTCGAAACGGTATTCGGCTATCGAGTA
CAGCACATTCTGACTATGGGACCTACCAAGGGGGGGATTCGATATCATCA
GGATGTCAGCCTCGGAGAAGTTTCAGCATTGGCGATGTGGATGAGCTGGA
AGTGTGCCCTGGTGCACCTGCCCTTTGGTGGAGCCAAAGGGGGCGTACGC
ATCGATCCCACGGGGTTAACCGGTCATGAACTGCAACGTCTCACCCGACG
ATTTGCAACCGAAATCAGCCCGATTATTGGACCTGAGAAAGACATTCCGG
CTCCTGATATGGGA
back to top