mRNA_M-pyrifera_M_contig112462.2612.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112462.2612.1
Unique NamemRNA_M-pyrifera_M_contig112462.2612.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A437QD36_9GAMM (DUF1499 domain-containing protein n=2 Tax=Neptunomonas TaxID=75687 RepID=A0A437QD36_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 2.350e-8
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1
Query:   34 IAVLVLALGIG---FAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSS 165
            IAVL+L +G+G   F+ MAVQSR GKAPGL +GQL PCG +PNCVSS
Sbjct:    5 IAVLLL-IGLGLAAFSWMAVQSRGGKAPGLREGQLAPCGAQPNCVSS 50          
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A2A4XLC2_9GAMM (Uncharacterized protein n=1 Tax=Ectothiorhodospiraceae bacterium TaxID=2026737 RepID=A0A2A4XLC2_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 3.200e-8
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   16 KSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHH 192
            K+ LI I VL+LA  + F ++   S+SG+APGLVDG L  C DKPNCVSS   +SD  H
Sbjct:    2 KTALIVILVLLLAPVVIFFMLGFSSKSGEAPGLVDGHLANCPDKPNCVSS-ENISDVTH 59          
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A484HJQ0_9DELT (Uncharacterized protein n=1 Tax=uncultured Desulfobacteraceae bacterium TaxID=218296 RepID=A0A484HJQ0_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 3.700e-8
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   16 KSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHHI 195
            K  LI++  L + LG G  I+   SRSGKAPGL++G+L PC   PNCV S  +    H+I
Sbjct:    2 KMALIALFALAVVLGAGLFILGAISRSGKAPGLLEGRLAPCPKAPNCVCSEEKGDAGHYI 61          
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A6S6UEH2_9GAMM (Uncharacterized protein n=1 Tax=uncultured Thiotrichaceae bacterium TaxID=298394 RepID=A0A6S6UEH2_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 9.340e-8
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   16 KSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHHI 195
            +++L+ + +L+LA+ I F I+ V+S+SG APGL  G+L  CG KPNCV S  +  +  +I
Sbjct:    2 RTILLIVGLLILAVVIYFFILGVRSKSGTAPGLSAGELAQCGTKPNCVCSEHKDKNEFYI 61          
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A2D6RQV9_9BURK (Uncharacterized protein n=1 Tax=Sutterellaceae bacterium TaxID=2026794 RepID=A0A2D6RQV9_9BURK)

HSP 1 Score: 55.8 bits (133), Expect = 9.690e-8
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 RRVLVKSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHHI 195
            R   VK  L+S+ VL+  + I F  + + S +G  PGL +GQL PC +KPNCVSS +  SD H I
Sbjct:   60 RGFYVKRALLSLIVLITLVIIVFFGLGLYSETGAPPGLANGQLAPCPNKPNCVSSESSPSDDHSI 124          
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A4R1EP61_9GAMM (Uncharacterized protein (DUF1499 family) n=1 Tax=Cocleimonas flava TaxID=634765 RepID=A0A4R1EP61_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 6.530e-7
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   16 KSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHHI 195
            K+ LI IA+LV+     F ++   S+ G APGLVDG+L  C +KPNCVSS  +    H I
Sbjct:    2 KTALIIIAILVILGLASFFVLGKMSQKGIAPGLVDGKLSKCSEKPNCVSSEYQDDAEHFI 61          
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A120GB80_9SPHN (Uncharacterized protein n=1 Tax=Erythrobacter sp. YT30 TaxID=1735012 RepID=A0A120GB80_9SPHN)

HSP 1 Score: 52.4 bits (124), Expect = 7.940e-7
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   10 LVKSLLISIAVLVL-ALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSS 165
            ++K++LI + VL L  LG GFA +  +S+SG APG+V+G L PC D PNCVSS
Sbjct:    1 MLKTILIIVFVLALIGLG-GFAYLGQKSKSGTAPGMVNGTLAPCPDSPNCVSS 52          
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A1Q6DR51_9DELT (Uncharacterized protein n=1 Tax=Desulfobulbaceae bacterium DB1 TaxID=1920419 RepID=A0A1Q6DR51_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 8.210e-7
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1
Query:   67 FAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHHI 195
            F ++AV SRSGKAPGL +G+L  C D PNCV S  +    H I
Sbjct:   19 FIVLAVMSRSGKAPGLTEGRLAKCPDTPNCVCSEQKDDTRHFI 61          
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A074MX89_ERYLO (Uncharacterized protein n=2 Tax=Erythrobacter longus TaxID=1044 RepID=A0A074MX89_ERYLO)

HSP 1 Score: 51.6 bits (122), Expect = 1.470e-6
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1
Query:   64 GFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSS 165
            GF ++ + S++G+APGLV GQL PC D PNCVSS
Sbjct:   15 GFFVLGLMSQNGEAPGLVQGQLAPCPDSPNCVSS 48          
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A2S7K9V4_9PROT (DUF1499 domain-containing protein n=2 Tax=Marinicaulis flavus TaxID=2058213 RepID=A0A2S7K9V4_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 2.160e-6
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   76 MAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSH 189
            +A++S+SG +PGLV+G+L PC   PNCVSS A   +SH
Sbjct:    2 LALKSKSGASPGLVEGRLAPCPSSPNCVSSEAGAPESH 39          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A437QD36_9GAMM2.350e-868.09DUF1499 domain-containing protein n=2 Tax=Neptunom... [more]
A0A2A4XLC2_9GAMM3.200e-854.24Uncharacterized protein n=1 Tax=Ectothiorhodospira... [more]
A0A484HJQ0_9DELT3.700e-846.67Uncharacterized protein n=1 Tax=uncultured Desulfo... [more]
A0A6S6UEH2_9GAMM9.340e-843.33Uncharacterized protein n=1 Tax=uncultured Thiotri... [more]
A0A2D6RQV9_9BURK9.690e-846.15Uncharacterized protein n=1 Tax=Sutterellaceae bac... [more]
A0A4R1EP61_9GAMM6.530e-746.67Uncharacterized protein (DUF1499 family) n=1 Tax=C... [more]
A0A120GB80_9SPHN7.940e-754.72Uncharacterized protein n=1 Tax=Erythrobacter sp. ... [more]
A0A1Q6DR51_9DELT8.210e-753.49Uncharacterized protein n=1 Tax=Desulfobulbaceae b... [more]
A0A074MX89_ERYLO1.470e-661.76Uncharacterized protein n=2 Tax=Erythrobacter long... [more]
A0A2S7K9V4_9PROT2.160e-655.26DUF1499 domain-containing protein n=2 Tax=Marinica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112462contigM-pyrifera_M_contig112462:17..211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.9500377-CDS-M-pyrifera_M_contig112462:16..2111622815638.9500377-CDS-M-pyrifera_M_contig112462:16..211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112462 17..211 -
1692277499.816426-CDS-M-pyrifera_M_contig112462:16..2111692277499.816426-CDS-M-pyrifera_M_contig112462:16..211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112462 17..211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112462.2612.1prot_M-pyrifera_M_contig112462.2612.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112462 17..211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112462.2612.1

>prot_M-pyrifera_M_contig112462.2612.1 ID=prot_M-pyrifera_M_contig112462.2612.1|Name=mRNA_M-pyrifera_M_contig112462.2612.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
RRVLVKSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKP
NCVSSMARVSDSHHI
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mRNA from alignment at M-pyrifera_M_contig112462:17..211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112462.2612.1 ID=mRNA_M-pyrifera_M_contig112462.2612.1|Name=mRNA_M-pyrifera_M_contig112462.2612.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig112462:17..211- (Macrocystis pyrifera P11B4 male)
AGGAGAGTCTTGGTGAAAAGTTTACTGATCAGTATTGCGGTTTTGGTACT TGCACTGGGGATCGGCTTCGCGATCATGGCGGTGCAATCGCGTTCGGGGA AAGCGCCGGGTCTCGTCGATGGTCAATTAAAACCCTGTGGCGACAAGCCT AACTGCGTGTCCTCGATGGCACGCGTCAGTGATTCGCATCATATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112462:17..211-

>mRNA_M-pyrifera_M_contig112462.2612.1 ID=mRNA_M-pyrifera_M_contig112462.2612.1|Name=mRNA_M-pyrifera_M_contig112462.2612.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig112462:17..211- (Macrocystis pyrifera P11B4 male)
AGGAGAGTCTTGGTGAAAAGTTTACTGATCAGTATTGCGGTTTTGGTACT
TGCACTGGGGATCGGCTTCGCGATCATGGCGGTGCAATCGCGTTCGGGGA
AAGCGCCGGGTCTCGTCGATGGTCAATTAAAACCCTGTGGCGACAAGCCT
AACTGCGTGTCCTCGATGGCACGCGTCAGTGATTCGCATCATATTAGGAG
AGTCTTGGTGAAAAGTTTACTGATCAGTATTGCGGTTTTGGTACTTGCAC
TGGGGATCGGCTTCGCGATCATGGCGGTGCAATCGCGTTCGGGGAAAGCG
CCGGGTCTCGTCGATGGTCAATTAAAACCCTGTGGCGACAAGCCTAACTG
CGTGTCCTCGATGGCACGCGTCAGTGATTCGCATCATATT
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