mRNA_M-pyrifera_M_contig112456.2610.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112456.2610.1
Unique NamemRNA_M-pyrifera_M_contig112456.2610.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112456.2610.1 vs. uniprot
Match: A0A847GAX5_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GAX5_9BACT)

HSP 1 Score: 151 bits (382), Expect = 2.290e-40
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = 1 
Query:    1 IVADVFTHDQAGLEIKARAIDAETSDLIATLDAFVDDKEDRAKVEAACRGLALQLAERYPRLSGEIRSVRGESVLVDWTKEDGVQEGAYFLFVQEQEPWVDEDTGEVLEPGEFVPVGRGKVLS 369
            +V ++F  D+ G+EIK R I  ETSDL+A LDA+V+DK D A+V+ A   LA QL   YPRLSGEI +VRG+ +LVDWT+EDGV+EGAY L V+E  PWVDEDTGEVL P EF PVGR ++ S
Sbjct:  545 LVGELFPRDEKGIEIKVRVIGTETSDLVAVLDAYVEDKSDGAQVKRAGDALAAQLEALYPRLSGEILAVRGQELLVDWTREDGVREGAYMLVVKETPPWVDEDTGEVLAPPEFAPVGRARLES 667
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BLAST of mRNA_M-pyrifera_M_contig112456.2610.1 vs. uniprot
Match: A0A7V2Y5Y5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y5Y5_9BACT)

HSP 1 Score: 149 bits (375), Expect = 2.260e-39
Identity = 74/128 (57.81%), Postives = 95/128 (74.22%), Query Frame = 1 
Query:    1 IVADVFTHDQAGLEIKARAIDAETSDLIA-TLDAFVDDKEDRAKVEAACRGLALQLAERYPRLSGEIRSVR----GESVLVDWTKEDGVQEGAYFLFVQEQEPWVDEDTGEVLEPGEFVPVGRGKVLS 369
            +VADVF  DQ GLEIKARA+ AETS+ +   LD ++DDK DRAKVEA C  LA   ++ +PRLSGE+ +V+    G+ +LV+WTKEDGVQ GAY L VQ+ EPW+D+ TGEVLEPGE   +GR ++ S
Sbjct:  550 VVADVFDRDQKGLEIKARAVSAETSEFVGGPLDVYIDDKADRAKVEAGCNTLADMFSKNFPRLSGELMAVKENPSGDEMLVNWTKEDGVQPGAYLLIVQQGEPWIDDSTGEVLEPGEISEIGRARIES 677
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BLAST of mRNA_M-pyrifera_M_contig112456.2610.1 vs. uniprot
Match: A0A7C1CNM6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1CNM6_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 1.500e-16
Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:    1 IVADVFTHDQAGLEIKARAIDAETSDLIATLDAFVDDKEDRAKVEAACRGLALQLAERYPRLSGEIRSVR----GESVLVDWTKEDGVQEGAYFLFVQEQEPWVDEDTGEVLEPGEFVPVGRGKV 363
            ++ DVF H   G+E K R + +ETSD++A +D +  +  D A  +AA   LA QL   YPRLSGE+ +VR     + +  DWT++DG+Q GAY L V E+    DE  GE   P     VGR ++
Sbjct:  250 LIGDVFNHGD-GVEAKVRIVSSETSDVVAIIDGYAKET-DAAGFKAAGEALATQLETLYPRLSGELLAVRERGGNKELYFDWTRDDGLQPGAYALIVHEEPAEYDEVLGEYFGPF-ITEVGRARL 371
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BLAST of mRNA_M-pyrifera_M_contig112456.2610.1 vs. uniprot
Match: A0A7C4MYL4_9DELT (Uncharacterized protein n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7C4MYL4_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 1.760e-5
Identity = 37/121 (30.58%), Postives = 62/121 (51.24%), Query Frame = 1 
Query:    1 IVADVFTHDQAGLEIKARAIDAETSDLIATLDAFVDDKEDRAKVEAACRGLALQLAERYPRLSGEIRSVRGESVLVDWTKEDGVQEGAYFLFVQEQEPWVDEDTGEVLEPGEFVPVGRGKV 363
            IV       + G+EI AR +D ETS+++A+ D + D+ +D A + +   G+A++    +P L G +   RG ++  D   +D ++     L  +E EP     TG VL     + VGR +V
Sbjct:  527 IVTGSIVESRTGMEIVARLVDTETSEILASEDVY-DEVKDYAGLRSLAEGMAVKFHRAFPLLDGLVLQQRGNAIFTD-LGQDKIKLNRRLLIFKE-EPLTHPVTGRVLGADNVI-VGRARV 643
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112456.2610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A847GAX5_9BACT2.290e-4060.98Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A7V2Y5Y5_9BACT2.260e-3957.81Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C1CNM6_9BACT1.500e-1640.80Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C4MYL4_9DELT1.760e-530.58Uncharacterized protein n=1 Tax=Desulfobacterales ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112456contigM-pyrifera_M_contig112456:206..574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.8781939-CDS-M-pyrifera_M_contig112456:205..5741622815638.8781939-CDS-M-pyrifera_M_contig112456:205..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112456 206..574 -
1692277499.7973475-CDS-M-pyrifera_M_contig112456:205..5741692277499.7973475-CDS-M-pyrifera_M_contig112456:205..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112456 206..574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112456.2610.1prot_M-pyrifera_M_contig112456.2610.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112456 206..574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112456.2610.1

>prot_M-pyrifera_M_contig112456.2610.1 ID=prot_M-pyrifera_M_contig112456.2610.1|Name=mRNA_M-pyrifera_M_contig112456.2610.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
IVADVFTHDQAGLEIKARAIDAETSDLIATLDAFVDDKEDRAKVEAACRG
LALQLAERYPRLSGEIRSVRGESVLVDWTKEDGVQEGAYFLFVQEQEPWV
DEDTGEVLEPGEFVPVGRGKVLS
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mRNA from alignment at M-pyrifera_M_contig112456:206..574-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112456.2610.1 ID=mRNA_M-pyrifera_M_contig112456.2610.1|Name=mRNA_M-pyrifera_M_contig112456.2610.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig112456:206..574- (Macrocystis pyrifera P11B4 male)
ATTGTGGCCGATGTGTTCACCCACGATCAGGCGGGTCTCGAAATCAAGGC
CCGCGCAATCGATGCGGAGACCTCCGACCTTATCGCCACATTGGACGCCT
TTGTGGATGACAAGGAAGATCGCGCCAAGGTGGAGGCAGCCTGTCGTGGC
TTGGCCCTCCAACTGGCAGAGCGGTACCCGCGGCTTTCCGGCGAAATTCG
CTCGGTCCGGGGAGAGAGTGTCCTCGTCGATTGGACCAAGGAAGATGGTG
TTCAGGAAGGGGCCTATTTCCTCTTCGTGCAGGAACAGGAACCGTGGGTT
GATGAAGACACGGGCGAAGTGCTCGAACCCGGTGAGTTTGTCCCGGTTGG
CCGTGGTAAAGTGCTCAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112456:206..574-

>mRNA_M-pyrifera_M_contig112456.2610.1 ID=mRNA_M-pyrifera_M_contig112456.2610.1|Name=mRNA_M-pyrifera_M_contig112456.2610.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig112456:206..574- (Macrocystis pyrifera P11B4 male)
ATTGTGGCCGATGTGTTCACCCACGATCAGGCGGGTCTCGAAATCAAGGC
CCGCGCAATCGATGCGGAGACCTCCGACCTTATCGCCACATTGGACGCCT
TTGTGGATGACAAGGAAGATCGCGCCAAGGTGGAGGCAGCCTGTCGTGGC
TTGGCCCTCCAACTGGCAGAGCGGTACCCGCGGCTTTCCGGCGAAATTCG
CTCGGTCCGGGGAGAGAGTGTCCTCGTCGATTGGACCAAGGAAGATGGTG
TTCAGGAAGGGGCCTATTTCCTCTTCGTGCAGGAACAGGAACCGTGGGTT
GATGAAGACACGGGCGAAGTGCTCGAACCCGGTGAGTTTGTCCCGGTTGG
CCGTGGTAAAGTGCTCAGTATTGTGGCCGATGTGTTCACCCACGATCAGG
CGGGTCTCGAAATCAAGGCCCGCGCAATCGATGCGGAGACCTCCGACCTT
ATCGCCACATTGGACGCCTTTGTGGATGACAAGGAAGATCGCGCCAAGGT
GGAGGCAGCCTGTCGTGGCTTGGCCCTCCAACTGGCAGAGCGGTACCCGC
GGCTTTCCGGCGAAATTCGCTCGGTCCGGGGAGAGAGTGTCCTCGTCGAT
TGGACCAAGGAAGATGGTGTTCAGGAAGGGGCCTATTTCCTCTTCGTGCA
GGAACAGGAACCGTGGGTTGATGAAGACACGGGCGAAGTGCTCGAACCCG
GTGAGTTTGTCCCGGTTGGCCGTGGTAAAGTGCTCAGT
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