mRNA_M-pyrifera_M_contig112452.2609.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112452.2609.1
Unique NamemRNA_M-pyrifera_M_contig112452.2609.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112452.2609.1 vs. uniprot
Match: A0A5A8DDD8_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDD8_CAFRO)

HSP 1 Score: 124 bits (310), Expect = 1.360e-30
Identity = 58/111 (52.25%), Postives = 82/111 (73.87%), Query Frame = 1 
Query:    1 VKSIKKHAKFRQLASYSVKCLQQVITPPHVGWERNLALAFEAKAADAIIEVFSRHTSDESVSEASMECLGAMAQNPRYSNELVDKGLVGVVCKSFKDNPDGAQTDELAELL 333
            VK++ KH KFRQLASYSV+CL++VITPP VGWERNLA AFEA AA+AI +V   H  DE+V  +S  CL A+A NP+Y+  L+++G+V V+CK+ ++ P+     ++  L+
Sbjct:   13 VKAVGKHKKFRQLASYSVQCLEKVITPPRVGWERNLAEAFEAGAAEAIFDVLKIHAKDETVMASSTACLAALAGNPKYAPALIERGIVDVMCKAVQEQPNSEIASKMLTLV 123
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BLAST of mRNA_M-pyrifera_M_contig112452.2609.1 vs. uniprot
Match: A0A5A8DUW8_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DUW8_CAFRO)

HSP 1 Score: 95.9 bits (237), Expect = 8.530e-21
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:    1 VKSIKKHAKFRQLASYSVKCLQQVITPPHVGWERNLALAFEAKAADAIIEVFSRHTSDESVSEASMECLGAMAQNPRYSNELVDKGLVGVVCKSFKDNPDGAQ-TDELAELL 333
            VKS+ KH  FRQLASYSV+CLQ+ ITPP VGWE     A+EA A DAI  V ++H SD  V  +S  CL ++A  P+Y+ +L   G +  +  + ++ PD  +   E  ELL
Sbjct:   19 VKSVNKHKNFRQLASYSVQCLQKAITPPTVGWEEARKEAYEAGALDAITAVLTKHKSDLVVLSSSTACLKSIASEPKYAGDLARSGALVGMLNAVEEQPDAKEGVQETLELL 130
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BLAST of mRNA_M-pyrifera_M_contig112452.2609.1 vs. uniprot
Match: A0A5A8ECS5_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECS5_CAFRO)

HSP 1 Score: 95.9 bits (237), Expect = 9.590e-21
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:    1 VKSIKKHAKFRQLASYSVKCLQQVITPPHVGWERNLALAFEAKAADAIIEVFSRHTSDESVSEASMECLGAMAQNPRYSNELVDKGLVGVVCKSFKDNPDGAQ-TDELAELL 333
            VKS+ KH  FRQLASYSV+CLQ+ ITPP VGWE     A+EA A DAI  V ++H SD  V  +S  CL ++A  P+Y+ +L   G +  +  + ++ PD  +   E  ELL
Sbjct:   19 VKSVNKHKNFRQLASYSVQCLQKAITPPTVGWEEARKEAYEAGALDAITAVLTKHKSDLVVLSSSTACLKSIASEPKYAGDLARSGALVGMLNAVEEQPDAKEGVQETLELL 130
[Close]
BLAST of mRNA_M-pyrifera_M_contig112452.2609.1 vs. uniprot
Match: A0A813D301_9DINO (AarA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813D301_9DINO)

HSP 1 Score: 86.7 bits (213), Expect = 1.670e-17
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 VKSIKKHAKFRQLASYSVKCLQQVITPPHVGWERNLALAFEA---KAADAIIEVFSRHTSDESVSEASMECLGAMAQNPRYSNELVDKGLVGVVCKSFKDNP 297
            V SI+K   FRQ+ASYSV+CL ++ITPP VGWE NL +AF+A   +A DAI  V  +H  D S+  A+ + L +MA  P+Y+  +V  G +  + +S   NP
Sbjct:   19 VTSIRKRKNFRQMASYSVQCLVKLITPPAVGWEENLKVAFDAGMCRALDAITAVLDQHAGDSSIMAAATQSLRSMATVPQYAAAIVKSGCMMSLMESVAANP 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112452.2609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5A8DDD8_CAFRO1.360e-3052.25Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5A8DUW8_CAFRO8.530e-2145.54Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8ECS5_CAFRO9.590e-2145.54Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A813D301_9DINO1.670e-1745.10AarA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112452contigM-pyrifera_M_contig112452:11..343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.8383808-CDS-M-pyrifera_M_contig112452:10..3431622815638.8383808-CDS-M-pyrifera_M_contig112452:10..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112452 11..343 -
1692277499.7848678-CDS-M-pyrifera_M_contig112452:10..3431692277499.7848678-CDS-M-pyrifera_M_contig112452:10..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112452 11..343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112452.2609.1prot_M-pyrifera_M_contig112452.2609.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112452 11..343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112452.2609.1

>prot_M-pyrifera_M_contig112452.2609.1 ID=prot_M-pyrifera_M_contig112452.2609.1|Name=mRNA_M-pyrifera_M_contig112452.2609.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
VKSIKKHAKFRQLASYSVKCLQQVITPPHVGWERNLALAFEAKAADAIIE
VFSRHTSDESVSEASMECLGAMAQNPRYSNELVDKGLVGVVCKSFKDNPD
GAQTDELAELL
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mRNA from alignment at M-pyrifera_M_contig112452:11..343-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112452.2609.1 ID=mRNA_M-pyrifera_M_contig112452.2609.1|Name=mRNA_M-pyrifera_M_contig112452.2609.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig112452:11..343- (Macrocystis pyrifera P11B4 male)
GTCAAATCGATCAAGAAGCACGCCAAGTTTCGACAGCTTGCTTCCTACTC
TGTCAAGTGTTTGCAACAAGTGATCACCCCTCCACATGTGGGGTGGGAGC
GTAATCTTGCACTTGCATTCGAAGCAAAAGCTGCAGATGCTATTATTGAG
GTGTTTTCTCGACACACATCCGATGAGAGTGTGTCAGAGGCCTCAATGGA
GTGTTTAGGAGCAATGGCACAAAACCCACGCTATTCCAATGAGTTGGTGG
ACAAAGGATTGGTGGGTGTGGTGTGCAAATCATTCAAGGACAACCCTGAT
GGAGCACAAACTGATGAATTGGCTGAATTGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112452:11..343-

>mRNA_M-pyrifera_M_contig112452.2609.1 ID=mRNA_M-pyrifera_M_contig112452.2609.1|Name=mRNA_M-pyrifera_M_contig112452.2609.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig112452:11..343- (Macrocystis pyrifera P11B4 male)
GTCAAATCGATCAAGAAGCACGCCAAGTTTCGACAGCTTGCTTCCTACTC
TGTCAAGTGTTTGCAACAAGTGATCACCCCTCCACATGTGGGGTGGGAGC
GTAATCTTGCACTTGCATTCGAAGCAAAAGCTGCAGATGCTATTATTGAG
GTGTTTTCTCGACACACATCCGATGAGAGTGTGTCAGAGGCCTCAATGGA
GTGTTTAGGAGCAATGGCACAAAACCCACGCTATTCCAATGAGTTGGTGG
ACAAAGGATTGGTGGGTGTGGTGTGCAAATCATTCAAGGACAACCCTGAT
GGAGCACAAACTGATGAATTGGCTGAATTGTTGGTCAAATCGATCAAGAA
GCACGCCAAGTTTCGACAGCTTGCTTCCTACTCTGTCAAGTGTTTGCAAC
AAGTGATCACCCCTCCACATGTGGGGTGGGAGCGTAATCTTGCACTTGCA
TTCGAAGCAAAAGCTGCAGATGCTATTATTGAGGTGTTTTCTCGACACAC
ATCCGATGAGAGTGTGTCAGAGGCCTCAATGGAGTGTTTAGGAGCAATGG
CACAAAACCCACGCTATTCCAATGAGTTGGTGGACAAAGGATTGGTGGGT
GTGGTGTGCAAATCATTCAAGGACAACCCTGATGGAGCACAAACTGATGA
ATTGGCTGAATTGTTG
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