mRNA_M-pyrifera_M_contig112450.2608.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig112450.2608.1
Unique Name	mRNA_M-pyrifera_M_contig112450.2608.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig112450.2608.1 vs. uniprot
Match: A0A2G5F2P8_AQUCA (ANAPC8 domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5F2P8_AQUCA)

HSP 1 Score: 55.1 bits (131), Expect = 2.610e-6
Identity = 35/104 (33.65%), Postives = 56/104 (53.85%), Query Frame = 1

Query:   55 WLYGVLLREVGDVEGAREVLAASVQADPWHWGAWAELGRCVSSKADVEAVLRKGPSHWMASLWCADALIGLHNGEGALPILKAAVKGPLPSSHWVRSKVATALY 366
            +LYGV+L+E+G  + AR+VL  SV   PW+W AW+EL +C+ +  DV   L    +HWM   +       L      L   +  +KG    S++V++++A   Y
Sbjct:  182 YLYGVVLKEIGREDLARDVLVESVNRYPWNWNAWSEL-QCLCTNVDVLNGLNL-KNHWMRDFFYGLVYQELRMRTDCLAKYEF-LKGIFCFSNYVQAQIAKVKY 282

[Close]

BLAST of mRNA_M-pyrifera_M_contig112450.2608.1 vs. uniprot
Match: L8GY64_ACACA (Tetratricopeptide repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GY64_ACACA)

HSP 1 Score: 54.7 bits (130), Expect = 3.590e-6
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1

Query:   37 LDGCVGWLYGVLLREVGDVEGAREVLAASVQADPWHWGAWAELGRCVSSKADVEAVLRKGPSHWMASLWCADALI 261
            LDG   ++Y ++LRE G ++ AR++LA SV+A PW+W AW +L    S   +  A L   P H M   + A A +
Sbjct:  213 LDGFCSYIYAIVLREEGQLDKARDMLAESVRAYPWNWSAWLDLAALPSLSWEHIASLNL-PHHIMRDFFYAQACL 286

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig112450.2608.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig112450.2608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2G5F2P8_AQUCA	2.610e-6	33.65	ANAPC8 domain-containing protein n=2 Tax=Thalictro...	[more]
L8GY64_ACACA	3.590e-6	38.67	Tetratricopeptide repeat domain containing protein...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig112450	contig	M-pyrifera_M_contig112450:217..582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Metazoa
Seed ortholog score	72.0
Seed ortholog evalue	2.1e-10
Seed eggNOG ortholog	7739.XP_002590511.1
Preferred name	CDC23
KEGG ko	ko:K03355
KEGG Pathway	ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG Module	M00389
Hectar predicted targeting category	other localisation
GOs	GO:0000070,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0000819,GO:0003002,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007091,GO:0007096,GO:0007113,GO:0007275,GO:0007346,GO:0007389,GO:0008150,GO:0008152,GO:0008356,GO:0009056,GO:0009057,GO:0009798,GO:0009896,GO:0009948,GO:0009949,GO:0009952,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016043,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0022603,GO:0030071,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044784,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048285,GO:0048518,GO:0048522,GO:0048856,GO:0050000,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051247,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0061630,GO:0061659,GO:0062033,GO:0065001,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0090068,GO:0090175,GO:0098813,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903047,GO:1903052,GO:1903364,GO:1905330,GO:1905818,GO:1905820,GO:1990234,GO:2000026,GO:2000027,GO:2001252
EggNOG free text desc.	protein K11-linked ubiquitination
EggNOG OGs	38EMD@33154,3BA98@33208,3CU1A@33213,4837M@7711,COG0013@1,KOG1155@2759
COG Functional cat.	DO
Best tax level	Chordata
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03036,ko04121
Exons	1
Model size	366
Cds size	363
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815638.7929904-UTR-M-pyrifera_M_contig112450:216..219	1622815638.7929904-UTR-M-pyrifera_M_contig112450:216..219	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig112450 217..219 +
1692277499.7605038-UTR-M-pyrifera_M_contig112450:216..219	1692277499.7605038-UTR-M-pyrifera_M_contig112450:216..219	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig112450 217..219 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815638.8042648-CDS-M-pyrifera_M_contig112450:219..582	1622815638.8042648-CDS-M-pyrifera_M_contig112450:219..582	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig112450 220..582 +
1692277499.7748127-CDS-M-pyrifera_M_contig112450:219..582	1692277499.7748127-CDS-M-pyrifera_M_contig112450:219..582	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig112450 220..582 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig112450.2608.1	prot_M-pyrifera_M_contig112450.2608.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig112450 220..582 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig112450:217..582+
coding sequence from alignment at M-pyrifera_M_contig112450:217..582+

protein sequence of mRNA_M-pyrifera_M_contig112450.2608.1

>prot_M-pyrifera_M_contig112450.2608.1 ID=prot_M-pyrifera_M_contig112450.2608.1|Name=mRNA_M-pyrifera_M_contig112450.2608.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MGASASRSRSVLDGCVGWLYGVLLREVGDVEGAREVLAASVQADPWHWGA
WAELGRCVSSKADVEAVLRKGPSHWMASLWCADALIGLHNGEGALPILKA
AVKGPLPSSHWVRSKVATALY

mRNA from alignment at M-pyrifera_M_contig112450:217..582+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig112450.2608.1 ID=mRNA_M-pyrifera_M_contig112450.2608.1|Name=mRNA_M-pyrifera_M_contig112450.2608.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig112450:217..582+ (Macrocystis pyrifera P11B4 male)
GCAATGGGCGCGTCTGCTTCACGTTCTCGTTCTGTTTTGGACGGTTGTGT
GGGTTGGTTGTATGGGGTATTGTTGCGGGAAGTTGGGGATGTGGAAGGTG
CAAGGGAAGTATTGGCAGCATCGGTGCAGGCGGATCCTTGGCATTGGGGT
GCTTGGGCAGAGTTGGGGAGGTGTGTGAGCAGCAAAGCAGACGTAGAAGC
AGTGTTGCGGAAAGGGCCATCTCACTGGATGGCCAGCTTGTGGTGTGCAG
ATGCACTGATTGGACTGCACAATGGAGAAGGAGCCCTCCCCATCCTCAAA
GCTGCTGTCAAAGGCCCTCTCCCTTCCTCGCATTGGGTCAGGAGCAAGGT
TGCAACTGCACTCTAC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112450:217..582+

>mRNA_M-pyrifera_M_contig112450.2608.1 ID=mRNA_M-pyrifera_M_contig112450.2608.1|Name=mRNA_M-pyrifera_M_contig112450.2608.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig112450:217..582+ (Macrocystis pyrifera P11B4 male)
ATGGGCGCGTCTGCTTCACGTTCTCGTTCTGTTTTGGACGGTTGTGTGGG
TTGGTTGTATGGGGTATTGTTGCGGGAAGTTGGGGATGTGGAAGGTGCAA
GGGAAGTATTGGCAGCATCGGTGCAGGCGGATCCTTGGCATTGGGGTGCT
TGGGCAGAGTTGGGGAGGTGTGTGAGCAGCAAAGCAGACGTAGAAGCAGT
GTTGCGGAAAGGGCCATCTCACTGGATGGCCAGCTTGTGGTGTGCAGATG
CACTGATTGGACTGCACAATGGAGAAGGAGCCCTCCCCATCCTCAAAGCT
GCTGTCAAAGGCCCTCTCCCTTCCTCGCATTGGGTCAGGAGCAAGGTTGC
AACTGCACTCTACATGGGCGCGTCTGCTTCACGTTCTCGTTCTGTTTTGG
ACGGTTGTGTGGGTTGGTTGTATGGGGTATTGTTGCGGGAAGTTGGGGAT
GTGGAAGGTGCAAGGGAAGTATTGGCAGCATCGGTGCAGGCGGATCCTTG
GCATTGGGGTGCTTGGGCAGAGTTGGGGAGGTGTGTGAGCAGCAAAGCAG
ACGTAGAAGCAGTGTTGCGGAAAGGGCCATCTCACTGGATGGCCAGCTTG
TGGTGTGCAGATGCACTGATTGGACTGCACAATGGAGAAGGAGCCCTCCC
CATCCTCAAAGCTGCTGTCAAAGGCCCTCTCCCTTCCTCGCATTGGGTCA
GGAGCAAGGTTGCAACTGCACTCTAC