mRNA_M-pyrifera_M_contig112429.2599.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112429.2599.1
Unique NamemRNA_M-pyrifera_M_contig112429.2599.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Match: A0A5A8E551_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8E551_CAFRO)

HSP 1 Score: 150 bits (379), Expect = 5.530e-41
Identity = 74/157 (47.13%), Postives = 102/157 (64.97%), Query Frame = 1
Query:    1 YPLFKQCDPLWGQNLMGGNST-DYDTICIQGCAMSSLSMGLHGRSYTLSAGAFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAEAEKPGVDEMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNTFYVNDPYYNSTSY 468
            +PL+KQCDP WG N MG     +  TIC +GCAM+S+SM L G    L+  A     + P SLN WL+ N GY CI G+CNNLVL AP+ +    ++F++E +KP +D+M+A ++  + + +AHV D+ HFVLV G D    + F VNDP+YNST Y
Sbjct:   25 FPLYKQCDPRWGGNQMGTRGPGERSTICGEGCAMTSVSMALAGLGVDLADRA-----VRPDSLNSWLEDNHGYVCIAGDCNNLVLSAPNRVPSSRLQFVSEHDKPELDDMRAAVEKGDTIFVAHVHDSGHFVLVTGVDSDSRDRFEVNDPFYNSTWY 176          
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Match: A0A0S4JBZ2_BODSA (Membrane-associated peptidase, putative (Fragment) n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JBZ2_BODSA)

HSP 1 Score: 134 bits (336), Expect = 3.640e-35
Identity = 69/157 (43.95%), Postives = 97/157 (61.78%), Query Frame = 1
Query:    1 YPLFKQCDPLWGQNLMGGNSTDY-DTICIQGCAMSSLSMGLHGRSYTLSAGAFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAEAEKPGVDEMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNTFYVNDPYYNSTSY 468
            +P++KQCDP WG + MG     +  TIC +GCAM+S SM L G   T++  A     + P +LN WL  N GY C+ G+C+NLVL AP+  +P  +  I E +KP   E+ A +  Q  + +AHV +NSHFVL++G  +     FYV+DP+YNST Y
Sbjct:   36 FPIYKQCDPRWGNDTMGTKGNGWRSTICGEGCAMTSTSMALAGLGATVNGSA-----VTPKTLNAWLIANQGYECLSGDCDNLVLTAPERFSPL-MSLIGETQKPSFAEISADIANQRIIHVAHVHNNSHFVLLIG-AVPGQEAFYVHDPFYNSTQY 185          
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Match: A0A7S3DAZ2_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DAZ2_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 2.640e-32
Identity = 66/157 (42.04%), Postives = 90/157 (57.32%), Query Frame = 1
Query:    1 YPLFKQCDPLWGQNLMGG-NSTDYDTICIQGCAMSSLSMGLHGRSYTLSAGAFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAEAEKPGVDEMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNTFYVNDPYYNSTSY 468
            YPL+ QCD  WG + MG     +  TIC +GCAMS ++MGL G + T+           PA+LN WL+ N GYTC  G+CNNLVL+ PD I+   +  + E  KP   ++ + +   N L I HV +  HFVL  G +     +F VNDP+Y +TSY
Sbjct:   40 YPLYLQCDKRWGNDEMGTPGEGERSTICGEGCAMSCVAMGLAGNNITIEGAT-----ATPATLNAWLEANQGYTCAGGDCNNLVLNKPDAISSR-VHLVGEFPKPAFSDLCSSIMKGNYLAILHVHNRGHFVLATGCNTAD-QSFNVNDPFYPTTSY 189          
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Match: A0A5B8MVB7_9CHLO (Hypothetical protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MVB7_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 8.700e-25
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 1
Query:    1 YPLFKQCDPLWGQNLMGGNSTDYDTICIQGCAMSSLSMGLHGRSYTLSAGAFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAEAEKPGVDEMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNTFYVNDPYYNSTSY 468
            YPL+KQCD  WG +++        T+C  GC MSS+SMGL G   ++   A      NP +LN WL  N GYT      NNL+ DA + I PG        +   +D  +      N +V+A+V +  HFVL  G+D ++P+  YVNDP + +T Y
Sbjct:   66 YPLYKQCDSRWGSDVIVSK-----TVCQVGCLMSSISMGLAGWQISIDGSA-----SNPGTLNSWLLDNSGYT----QGNNLIEDALNAIVPGMWSGSGMHKSNDLDPQELPSYFDNSIVVANVMNGRHFVLATGWDPEEPDNVYVNDPGFRNTQY 207          
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Match: X6ML71_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6ML71_RETFI)

HSP 1 Score: 102 bits (255), Expect = 1.550e-23
Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 1
Query:    1 YPLFKQCDPLWGQNLMGGNST-DYDTICIQG-------------------------CAMSSLSMGLHGRSYTLSAGAFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAEAEKPGVDEMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNT--FYVNDPYYNSTSYMV 474
            Y  + QCDP WG ++MG N   +  TIC++G                         CAM+S+++ L G  + ++A        NP +LN WL+ N+GY C+DG+CN+L +   D +  G +R+   +    ++E++  LD Q+ + IAH+   SHFV  +       N     V DPY+N+TSY V
Sbjct:   27 YLHYMQCDPQWGNDVMGTNGDGERATICLEGITQTNKQIKKRGSIKKKTHIALFNGCAMTSVAIALSGLDFDINATL-----ANPGTLNEWLETNNGYLCMDGDCNDLNIPIIDNLTNGMLRYDDSSSNSSLNEVRRGLDAQDTIFIAHIPSLSHFVFCLNASWTGSNAQQIQVLDPYFNTTSYNV 207          
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Match: A0A0L0DRQ9_THETB (Peptidase_C39_2 domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DRQ9_THETB)

HSP 1 Score: 97.1 bits (240), Expect = 2.400e-22
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 1
Query:    1 YPLFKQCDPLWGQNLMGGNSTDYDTICIQGCAMSSLSMGLHGRSYTLSAGAFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAEAEKPGVDEMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNTFYVNDPYYNSTSY 468
            +P+FKQCDP WG   +G   +  +TIC  GCAM+S +M L   + T+         +NP ++N WL ++ G+   D     ++  A  G+  G ++     + P    +  +++  +P VI HVRDN+HFVL +GYD + PN   VNDP + +T Y
Sbjct:   28 WPMFKQCDPRWGNERLGDAGSP-NTICQAGCAMTSTTMALAHFNTTVDKHG-----VNPGTVNSWLVKHGGFADKD----LIIWSAVSGL--GTMKVDTILQSPSASVVHGYINKGHP-VIMHVRDNTHFVLGIGYDSENPNMIVVNDPAFTTTEY 170          
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Match: A0A7S3HFN8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFN8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.520e-22
Identity = 63/160 (39.38%), Postives = 92/160 (57.50%), Query Frame = 1
Query:    1 YPLFKQCDPLWGQNLMGGNSTDYDTICIQGCAMSSLSMGLHGRSYTLSAGAFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAEA----EKPGVDEMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNTFYVNDPYYNSTSY 468
            +PLFKQCD  W ++LM     D  T+C  GC MSS SMGL G +  + A     I   P +LN WL++NDGY   DG+ N+L+      I P  I +  +A         D+++++LD +  +VIA+V +  HFVL+ GY  +  +TF VNDP Y+ ++Y
Sbjct:   36 FPLFKQCDSRWAEDLM-----DTKTVCNVGCLMSSTSMGLAGTNIPIKATP--EINSTPKTLNEWLRRNDGY---DGS-NDLIETQVPLIDPSRIFWNEDAFHKTNDLTFDQVRSYLD-KGRIVIANVNNGGHFVLLTGYSEEDGDTFAVNDPGYDRSTY 183          
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Match: A0A151ZCS8_9MYCE (Peptidase_C39_2 domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZCS8_9MYCE)

HSP 1 Score: 94.7 bits (234), Expect = 2.180e-21
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 1
Query:    1 YPLFKQCDPLWGQNLMGGNSTDYDTICIQGCAMSSLSMGLHGRSYTLSAGAFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAEAEKPGVDEMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNTFYVNDPYYNSTSY 468
            YPL+KQCDP W   +M     +  TIC  GC MSS SM + G+  T+          NP++ N WL+ N+GYT  D    ++V D  + +   D   +       + ++Q  LD  N ++I +VR+ +HFVL  GYD    +  YVNDP ++   Y
Sbjct:   26 YPLYKQCDPEWANQIM-----ETTTICEVGCLMSSTSMAMGGKGITIDTNT-----SNPSTFNYWLRNNNGYTSNDELIESVVPDINNQLIEWDGSKL-NGTALSMTDIQNILDETNNILILNVRNGTHFVLATGYDTTLQDVIYVNDPGFDQDFY 170          
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Match: Q55G99_DICDI (Peptidase_C39_2 domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55G99_DICDI)

HSP 1 Score: 91.7 bits (226), Expect = 2.740e-20
Identity = 55/158 (34.81%), Postives = 87/158 (55.06%), Query Frame = 1
Query:    1 YPLFKQCDPLWGQNLMGGNSTDYDTICIQGCAMSSLSMGLHGRSYTLSAGAFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAE--AEKPGVDEMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNTFYVNDPYYNSTSY 468
            YPL+KQCD  WG +L+       +TIC  GC MSS SM + G+  T+  G       NP SLN WL+ N GY   +G+  NL++++        I ++    + +  +D++ + L+ ++ ++I +V   SHFVL  GYD  + +  YVNDP +  + Y
Sbjct:   26 YPLYKQCDSRWGNDLI-----ITETICDVGCLMSSCSMAIGGKGITIDDGI-----SNPGSLNTWLKSNSGY---EGD--NLLVESSLENVSNKINYVGSFPSSQYTMDDIISMLNKKDLILIINVNQGSHFVLATGYDTTESDYVYVNDPGFTKSYY 168          
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Match: A0A0D2VVY5_CAPO3 (Peptidase_C39_2 domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VVY5_CAPO3)

HSP 1 Score: 88.2 bits (217), Expect = 5.090e-19
Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 1
Query:    1 YPLFKQCDPLWGQNLMGGNSTDYDTICIQGCAMSSLSMGLHGRSYTLSAGAFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAEAEKPGVD----EMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNTFYVNDPYYNSTSY 468
            YPLFKQCDP WG +L+     D +TIC  GC MSS+SM +HG  + +     SS   NP SLN +L+ N+GY   D     L   A   I P DI + A+   P  D     + ++L++   +VIA+V    HFVLV        +T +VNDP +N+T Y
Sbjct:   17 YPLFKQCDPAWGDDLI-----DTETICQVGCLMSSISMAIHG--WQIKINGTSS---NPQSLNNFLRANNGYIGDD-----LDESAVPKINPVDISWPADGMHPTNDLSFGTIASYLEMGR-VVIANVLHGRHFVLVTAAS-NNNDTLFVNDPGFNTTYY 159          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112429.2599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A5A8E551_CAFRO5.530e-4147.13Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
A0A0S4JBZ2_BODSA3.640e-3543.95Membrane-associated peptidase, putative (Fragment)... [more]
A0A7S3DAZ2_9EUKA2.640e-3242.04Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A5B8MVB7_9CHLO8.700e-2537.82Hypothetical protein n=1 Tax=Chloropicon primus Ta... [more]
X6ML71_RETFI1.550e-2332.26Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A0L0DRQ9_THETB2.400e-2235.26Peptidase_C39_2 domain-containing protein n=1 Tax=... [more]
A0A7S3HFN8_9STRA3.520e-2239.38Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A151ZCS8_9MYCE2.180e-2135.26Peptidase_C39_2 domain-containing protein n=1 Tax=... [more]
Q55G99_DICDI2.740e-2034.81Peptidase_C39_2 domain-containing protein n=1 Tax=... [more]
A0A0D2VVY5_CAPO35.090e-1940.00Peptidase_C39_2 domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112429contigM-pyrifera_M_contig112429:99..572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score120.6
Seed ortholog evalue6.8e-25
Seed eggNOG ortholog946362.XP_004996543.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase_C39 like family
EggNOG OGs2C5AB@1,2S2XM@2759,3AKQP@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.3682435-CDS-M-pyrifera_M_contig112429:98..5721622815638.3682435-CDS-M-pyrifera_M_contig112429:98..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112429 99..572 +
1692277499.5707755-CDS-M-pyrifera_M_contig112429:98..5721692277499.5707755-CDS-M-pyrifera_M_contig112429:98..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112429 99..572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112429.2599.1prot_M-pyrifera_M_contig112429.2599.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112429 99..572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112429.2599.1

>prot_M-pyrifera_M_contig112429.2599.1 ID=prot_M-pyrifera_M_contig112429.2599.1|Name=mRNA_M-pyrifera_M_contig112429.2599.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
YPLFKQCDPLWGQNLMGGNSTDYDTICIQGCAMSSLSMGLHGRSYTLSAG
AFSSIPINPASLNRWLQQNDGYTCIDGNCNNLVLDAPDGIAPGDIRFIAE
AEKPGVDEMQAWLDLQNPLVIAHVRDNSHFVLVVGYDLQQPNTFYVNDPY
YNSTSYMV
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mRNA from alignment at M-pyrifera_M_contig112429:99..572+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112429.2599.1 ID=mRNA_M-pyrifera_M_contig112429.2599.1|Name=mRNA_M-pyrifera_M_contig112429.2599.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig112429:99..572+ (Macrocystis pyrifera P11B4 male)
TACCCCCTCTTCAAGCAGTGCGATCCCTTGTGGGGCCAGAACCTCATGGG CGGCAACAGCACAGACTACGACACCATCTGCATCCAGGGCTGTGCGATGT CGAGCCTCTCCATGGGTCTGCACGGCCGAAGCTACACTCTCTCCGCTGGA GCCTTCTCCTCCATCCCCATCAACCCGGCCTCCCTCAACCGTTGGCTGCA GCAGAACGATGGCTACACGTGCATCGACGGCAACTGCAACAACCTCGTGC TGGACGCGCCCGACGGCATAGCTCCTGGCGACATTCGCTTCATTGCGGAG GCTGAGAAGCCTGGCGTGGACGAGATGCAGGCGTGGCTCGACCTGCAGAA CCCTCTCGTCATTGCACATGTGCGAGACAACTCCCACTTTGTCCTCGTGG TGGGATACGATCTCCAGCAGCCCAACACCTTCTACGTGAACGACCCCTAC TACAACAGCACCTCCTACATGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112429:99..572+

>mRNA_M-pyrifera_M_contig112429.2599.1 ID=mRNA_M-pyrifera_M_contig112429.2599.1|Name=mRNA_M-pyrifera_M_contig112429.2599.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig112429:99..572+ (Macrocystis pyrifera P11B4 male)
TACCCCCTCTTCAAGCAGTGCGATCCCTTGTGGGGCCAGAACCTCATGGG
CGGCAACAGCACAGACTACGACACCATCTGCATCCAGGGCTGTGCGATGT
CGAGCCTCTCCATGGGTCTGCACGGCCGAAGCTACACTCTCTCCGCTGGA
GCCTTCTCCTCCATCCCCATCAACCCGGCCTCCCTCAACCGTTGGCTGCA
GCAGAACGATGGCTACACGTGCATCGACGGCAACTGCAACAACCTCGTGC
TGGACGCGCCCGACGGCATAGCTCCTGGCGACATTCGCTTCATTGCGGAG
GCTGAGAAGCCTGGCGTGGACGAGATGCAGGCGTGGCTCGACCTGCAGAA
CCCTCTCGTCATTGCACATGTGCGAGACAACTCCCACTTTGTCCTCGTGG
TGGGATACGATCTCCAGCAGCCCAACACCTTCTACGTGAACGACCCCTAC
TACAACAGCACCTCCTACATGGTTTACCCCCTCTTCAAGCAGTGCGATCC
CTTGTGGGGCCAGAACCTCATGGGCGGCAACAGCACAGACTACGACACCA
TCTGCATCCAGGGCTGTGCGATGTCGAGCCTCTCCATGGGTCTGCACGGC
CGAAGCTACACTCTCTCCGCTGGAGCCTTCTCCTCCATCCCCATCAACCC
GGCCTCCCTCAACCGTTGGCTGCAGCAGAACGATGGCTACACGTGCATCG
ACGGCAACTGCAACAACCTCGTGCTGGACGCGCCCGACGGCATAGCTCCT
GGCGACATTCGCTTCATTGCGGAGGCTGAGAAGCCTGGCGTGGACGAGAT
GCAGGCGTGGCTCGACCTGCAGAACCCTCTCGTCATTGCACATGTGCGAG
ACAACTCCCACTTTGTCCTCGTGGTGGGATACGATCTCCAGCAGCCCAAC
ACCTTCTACGTGAACGACCCCTACTACAACAGCACCTCCTACATGGTT
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