mRNA_M-pyrifera_M_contig112422.2598.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112422.2598.1
Unique NamemRNA_M-pyrifera_M_contig112422.2598.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Match: A0A5J4Z5P0_PORPP (MFS domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5P0_PORPP)

HSP 1 Score: 140 bits (352), Expect = 4.350e-36
Identity = 64/131 (48.85%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    1 FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVRNSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVKRYTNEETRTFGFSIFYSVMNVAALTAGPATD 393
            FS +L LT+YL+DEFG  D EAGW YG +G+  ++ G++CG +ID+MGVR SL++GAL+  + R +     +R+ +L +L +  P    LGIP++ I +KRYTN   RTF FS +YS+MN+AAL AGP  D
Sbjct:  255 FSFALVLTMYLTDEFGMDDTEAGWAYGSYGLMSTVFGVVCGWVIDLMGVRQSLIIGALVGCSARLVLALTSSRFVVLATLYIFLPFAECLGIPILSIGIKRYTNAANRTFAFSFYYSIMNIAALIAGPLVD 385          
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Match: A0A2V3J0J0_9FLOR (MFS domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0J0_9FLOR)

HSP 1 Score: 135 bits (339), Expect = 2.640e-34
Identity = 70/131 (53.44%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    1 FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVRNSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVKRYTNEETRTFGFSIFYSVMNVAALTAGPATD 393
            FS+SL LT++L++EFG +D  AGW YG +GV  +  GLLCG  ID +GVR SL+VGA+I  A R I     +R   +L L  L P    LGIP+M I +KRYT+   RTF FS+FYS+MNVAAL AGP  D
Sbjct:  186 FSLSLVLTLFLTEEFGMSDTAAGWTYGAYGVMSTFFGLLCGWFIDYLGVRVSLMVGAIIGAASRFIMAVTLSRKIAVLMLYSLLPFAECLGIPIMTIGIKRYTSSHNRTFAFSLFYSMMNVAALCAGPLVD 316          
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Match: A0A5J4Z791_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z791_PORPP)

HSP 1 Score: 133 bits (334), Expect = 3.710e-34
Identity = 64/131 (48.85%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    1 FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVRNSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVKRYTNEETRTFGFSIFYSVMNVAALTAGPATD 393
            FS +L L +YLS+EFG +D++AGW YG +GV  ++ G++CG  ID+MGVR SL++G+ +    R +   +R++   L+ L  L P   SLGIP+M I VKRY++   RT  FS +YS+MNVAAL AGPA D
Sbjct:   74 FSFALVLVLYLSEEFGLSDVQAGWAYGMYGVMSTVFGMVCGWFIDIMGVRASLIIGSSVGMIARFVLALSRSKAVTLIILGSLLPFAESLGIPIMTIGVKRYSSPANRTIAFSFYYSIMNVAALCAGPAVD 204          
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Match: A0A7S0ZGR1_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGR1_9RHOD)

HSP 1 Score: 130 bits (328), Expect = 3.470e-33
Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVRNSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVKRYTNEETRTFGFSIFYSVMNVAALTAGPATD 393
            FS +L LT++LS EF  +D+EAGW+YG +GV  ++ G+LCG ++D +GV+ SL  GA++    R + C   A    ++ L+   P   SLGIPVM IA+KRYT+   RTF F+++YS MN+AAL AGPA D
Sbjct:   55 FSFALVLTLFLSTEFQMSDVEAGWVYGLYGVFSTVFGVLCGWVVDWLGVKWSLFFGAILGTIARLLLCFCTAPRSAVIVLVTALPFAESLGIPVMTIAIKRYTHTSNRTFAFALYYSCMNIAALVAGPAVD 185          
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Match: A0A7S1THG9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THG9_9RHOD)

HSP 1 Score: 129 bits (325), Expect = 1.170e-32
Identity = 66/131 (50.38%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVRNSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVKRYTNEETRTFGFSIFYSVMNVAALTAGPATD 393
            FS +L LT++L++E+G +D  AGW+YG +GV  +I G++CG IID MGVR SL VGAL+    R       ++   +  L    PL  SLGIP+M I +KRYTN   RT+ FS FYSVMN+AAL AGP  D
Sbjct:  109 FSFALVLTLFLTEEYGMSDQAAGWVYGMYGVMSTISGVVCGWIIDSMGVRWSLAVGALVGTVTRLFLAFTGSKTLTVSLLYTALPLSESLGIPIMTIGIKRYTNASNRTYAFSFFYSVMNLAALVAGPLVD 239          
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Match: A0A7S0T5R6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T5R6_9RHOD)

HSP 1 Score: 127 bits (320), Expect = 6.720e-32
Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVRNSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVKRYTNEETRTFGFSIFYSVMNVAALTAGPATD 393
            FS +L L ++LS EFG +D++AG++YG +GV+ +  G++CG  +D +GVR SL++GA++    R +    R++   +  LL   P   SLGIPVM IAVKR TN+  RTF FS +YS MN+AAL AGPA D
Sbjct:   81 FSFALVLVLFLSSEFGMSDVQAGYIYGLYGVTSTAFGVICGWAVDFLGVRWSLLLGAVLGTLARVVLSITRSKLIAIFVLLSALPFAESLGIPVMTIAVKRATNDSNRTFAFSFYYSCMNIAALIAGPAVD 211          
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Match: A0A7S0ZAP8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAP8_9RHOD)

HSP 1 Score: 123 bits (309), Expect = 1.730e-30
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVRNSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVKRYTNEETRTFGFSIFYSVMNVAALTAGPATD 393
            FS +L L ++LS+EF   D  AGW YG +G+  ++ G+LCG  ID +GV+ SLV+G+L+    R +     +R+  L  L    P    LGIP++ I +KRYTN+  RTF FS +YS+MNVAAL AGP  D
Sbjct:  198 FSFTLVLVMFLSEEFDMDDTAAGWNYGMYGLFSTLFGVLCGWFIDYLGVKQSLVLGSLLGATARFVLAFTTSRFVALAVLYTALPFAECLGIPILTIGIKRYTNQSNRTFAFSFYYSIMNVAALVAGPLVD 328          
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Match: A0A1X6NWG3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWG3_PORUM)

HSP 1 Score: 122 bits (305), Expect = 8.480e-30
Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = 1
Query:    1 FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVRNSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVKRYTNEETRTFGFSIFYSVMNVAALTAGPATD 393
            FS SL++T+YLSDEF ++D+ AG  YG +GV+ ++ G+  G +ID +GVR+SL+VGA +    R +    R R   L+ L  L P   +LG+PV+ IAV+RYTN  +RT GF++FY+VMNV AL AG   D
Sbjct:   32 FSSSLTMTLYLSDEFDFSDIAAGLHYGGYGVASTLYGVAGGAVIDRLGVRSSLLVGAGVATVARGVLGVTRDRTTALVLLYTLLPASDALGVPVLTIAVRRYTNGRSRTLGFALFYTVMNVGALVAGGGVD 162          
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Match: A0A7S0AF47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AF47_9STRA)

HSP 1 Score: 116 bits (290), Expect = 9.300e-30
Identity = 56/131 (42.75%), Postives = 85/131 (64.89%), Query Frame = 1
Query:    1 FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVRNSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVKRYTNEETRTFGFSIFYSVMNVAALTAGPATD 393
            FS S+  T++LS++FGY+D+ AG +YG +G  I++ GLL G ++D  GV  SL +G  ++   R +     +R+ LL ++ +    G +LGIPV+   ++RYTNE +R F F +FY VMNVAAL +GP  D
Sbjct:   45 FSFSIIFTLFLSEDFGYSDVTAGSIYGLWGALITVYGLLVGPVVDNFGVAKSLRLGFALSLLARVLIFATTSRYVLLFNVCVTLATGNALGIPVLTTGIRRYTNERSRGFAFGLFYVVMNVAALLSGPVVD 175          
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Match: B8BWD7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWD7_THAPS)

HSP 1 Score: 120 bits (300), Expect = 4.210e-29
Identity = 61/131 (46.56%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVRNSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVKRYTNEETRTFGFSIFYSVMNVAALTAGPATD 393
            FS SL  T++LS+EFG  D++AG +YG +G  I+I GL  G +ID +GV   L +G +++F  R       +R  LL   L+  PLG  LGIPV+ + ++RYTNEE R F F +FY VMN+ AL AGP  D
Sbjct:   52 FSFSLVFTLFLSNEFGMNDIQAGTIYGAWGALITIFGLFTGTVIDNLGVATCLRIGFVLSFVTRLTLFLCTSRTVLLACTLVALPLGNCLGIPVLTVGIRRYTNEENRGFAFGLFYVVMNIGALVAGPLVD 182          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112422.2598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4Z5P0_PORPP4.350e-3648.85MFS domain-containing protein n=1 Tax=Porphyridium... [more]
A0A2V3J0J0_9FLOR2.640e-3453.44MFS domain-containing protein n=1 Tax=Gracilariops... [more]
A0A5J4Z791_PORPP3.710e-3448.85Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A7S0ZGR1_9RHOD3.470e-3348.09Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S1THG9_9RHOD1.170e-3250.38Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0T5R6_9RHOD6.720e-3248.09Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S0ZAP8_9RHOD1.730e-3045.80Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A1X6NWG3_PORUM8.480e-3048.09Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0AF47_9STRA9.300e-3042.75Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
B8BWD7_THAPS4.210e-2946.56Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112422contigM-pyrifera_M_contig112422:15..583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue3.3e-25
Seed eggNOG ortholog35128.Thaps3936
Hectar predicted targeting categoryother localisation
EggNOG OGs2CPQW@1,2R2E8@2759,2XESG@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons4
Model size393
Cds size393
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112422.2598.1prot_M-pyrifera_M_contig112422.2598.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112422 15..583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.2843301-CDS-M-pyrifera_M_contig112422:14..1121622815638.2843301-CDS-M-pyrifera_M_contig112422:14..112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112422 15..112 -
1692277499.5364134-CDS-M-pyrifera_M_contig112422:14..1121692277499.5364134-CDS-M-pyrifera_M_contig112422:14..112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112422 15..112 -
1622815638.2943535-CDS-M-pyrifera_M_contig112422:169..2851622815638.2943535-CDS-M-pyrifera_M_contig112422:169..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112422 170..285 -
1692277499.5459886-CDS-M-pyrifera_M_contig112422:169..2851692277499.5459886-CDS-M-pyrifera_M_contig112422:169..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112422 170..285 -
1622815638.3052657-CDS-M-pyrifera_M_contig112422:345..4841622815638.3052657-CDS-M-pyrifera_M_contig112422:345..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112422 346..484 -
1692277499.5540361-CDS-M-pyrifera_M_contig112422:345..4841692277499.5540361-CDS-M-pyrifera_M_contig112422:345..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112422 346..484 -
1622815638.320771-CDS-M-pyrifera_M_contig112422:543..5831622815638.320771-CDS-M-pyrifera_M_contig112422:543..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112422 544..583 -
1692277499.5620508-CDS-M-pyrifera_M_contig112422:543..5831692277499.5620508-CDS-M-pyrifera_M_contig112422:543..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112422 544..583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112422.2598.1

>prot_M-pyrifera_M_contig112422.2598.1 ID=prot_M-pyrifera_M_contig112422.2598.1|Name=mRNA_M-pyrifera_M_contig112422.2598.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
FSISLSLTVYLSDEFGYTDLEAGWLYGFFGVSISICGLLCGGIIDMMGVR
NSLVVGALINFAGRAIFCTARARWQLLLSLLLLQPLGMSLGIPVMVIAVK
RYTNEETRTFGFSIFYSVMNVAALTAGPATD
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mRNA from alignment at M-pyrifera_M_contig112422:15..583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112422.2598.1 ID=mRNA_M-pyrifera_M_contig112422.2598.1|Name=mRNA_M-pyrifera_M_contig112422.2598.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=569bp|location=Sequence derived from alignment at M-pyrifera_M_contig112422:15..583- (Macrocystis pyrifera P11B4 male)
TTCTCCATCTCTCTCAGCCTTACAGTGTATCTGTCTGATGGTGCGTACTC TACTGTTTCGCTTGCGATGCGTATTGCTGACGTGCGCGCTATCTGTTAGA GTTTGGGTACACTGATTTGGAAGCTGGATGGTTGTACGGTTTCTTCGGCG TGTCCATCTCCATCTGTGGTCTGTTGTGCGGCGGGATAATTGACATGATG GGAGTGCGCAACTCTCTTGTAGTTGGTGCGCTCATCAAGTACGTTATCGT GTTGCCCTGTGGCTGTGGCAGTAGTCGTGCGTTGACACATGCGCACAGTT TTGCAGGCCGAGCTATATTCTGCACCGCCCGCGCCAGGTGGCAGCTGCTT CTCAGCTTGCTGCTGCTGCAGCCACTGGGCATGTCGTTGGGGATTCCTGT TATGGTGATTGCAGGTCCGTGCTGCGCGTGTGGATGCTCGCCACCAGGGC TAACCTATTCTGAGCCCTCAGTCAAGCGGTACACAAACGAGGAGACACGA ACGTTTGGCTTCTCCATTTTCTACTCCGTCATGAATGTGGCAGCGCTTAC TGCTGGCCCAGCAACTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112422:15..583-

>mRNA_M-pyrifera_M_contig112422.2598.1 ID=mRNA_M-pyrifera_M_contig112422.2598.1|Name=mRNA_M-pyrifera_M_contig112422.2598.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig112422:15..583- (Macrocystis pyrifera P11B4 male)
TTCTCCATCTCTCTCAGCCTTACAGTGTATCTGTCTGATGTTCTCCATCT
CTCTCAGCCTTACAGTGTATCTGTCTGATGAGTTTGGGTACACTGATTTG
GAAGCTGGATGGTTGTACGGTTTCTTCGGCGTGTCCATCTCCATCTGTGG
TCTGTTGTGCGGCGGGATAATTGACATGATGGGAGTGCGCAACTCTCTTG
TAGTTGGTGCGCTCATCAAAGTTTGGGTACACTGATTTGGAAGCTGGATG
GTTGTACGGTTTCTTCGGCGTGTCCATCTCCATCTGTGGTCTGTTGTGCG
GCGGGATAATTGACATGATGGGAGTGCGCAACTCTCTTGTAGTTGGTGCG
CTCATCAATTTTGCAGGCCGAGCTATATTCTGCACCGCCCGCGCCAGGTG
GCAGCTGCTTCTCAGCTTGCTGCTGCTGCAGCCACTGGGCATGTCGTTGG
GGATTCCTGTTATGGTGATTGCAGTTTTGCAGGCCGAGCTATATTCTGCA
CCGCCCGCGCCAGGTGGCAGCTGCTTCTCAGCTTGCTGCTGCTGCAGCCA
CTGGGCATGTCGTTGGGGATTCCTGTTATGGTGATTGCAGTCAAGCGGTA
CACAAACGAGGAGACACGAACGTTTGGCTTCTCCATTTTCTACTCCGTCA
TGAATGTGGCAGCGCTTACTGCTGGCCCAGCAACTGATTCAAGCGGTACA
CAAACGAGGAGACACGAACGTTTGGCTTCTCCATTTTCTACTCCGTCATG
AATGTGGCAGCGCTTACTGCTGGCCCAGCAACTGAT
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