mRNA_M-pyrifera_M_contig112420.2597.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112420.2597.1
Unique NamemRNA_M-pyrifera_M_contig112420.2597.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112420.2597.1 vs. uniprot
Match: A0A1Q7WE45_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium 13_1_20CM_3_71_11 TaxID=1803477 RepID=A0A1Q7WE45_9ACTN)

HSP 1 Score: 57.4 bits (137), Expect = 1.610e-7
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    4 VDVEAALTTPVPANATQTWERSVGTGTLDGARGTDIVTINGQALIGENTFAGPFDNAGWLAALTTDGTW 210
            +++  A+ TPV  NATQTW RS GTG+L+ +RG   + ++  AL GEN   GPF  A W AA +    W
Sbjct:   11 LNLAKAVHTPVK-NATQTWARSTGTGSLEASRGGAHLALDDVALAGENDLFGPFSTATWAAASSAGTAW 78
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BLAST of mRNA_M-pyrifera_M_contig112420.2597.1 vs. uniprot
Match: A0A1Q7AUG0_9ACTN (Peptidase_S8 domain-containing protein (Fragment) n=1 Tax=Actinobacteria bacterium 13_2_20CM_2_72_6 TaxID=1803495 RepID=A0A1Q7AUG0_9ACTN)

HSP 1 Score: 57.4 bits (137), Expect = 8.450e-7
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    4 VDVEAALTTPVPANATQTWERSVGTGTLDGARGTDIVTINGQALIGENTFAGPFDNAGWLAALTTDGTW 210
            +++  A+ TPV  NATQTW RS GTG+L+ +RG   + ++  AL GEN   GPF  A W AA +    W
Sbjct:  354 LNLAKAVHTPVK-NATQTWARSTGTGSLEASRGGAHLALDDVALAGENDLFGPFSTATWAAASSAGTAW 421
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BLAST of mRNA_M-pyrifera_M_contig112420.2597.1 vs. uniprot
Match: A0A853CHU7_9ACTN (Serine protease AprX n=1 Tax=Geodermatophilus daqingensis TaxID=2026353 RepID=A0A853CHU7_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 1.890e-5
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 MVDVEAALTTPVPANATQTWERSVGTGTLDGARGTDIVTINGQALIGENTFAGPFDNAGWLAALTTDGTWWETLS 225
            +V++ AA T P P NATQ W  SVGTG+L+ ARG+  V++NG+ + GE    G   N+  +A+   + + W  +S
Sbjct:  406 LVNLAAAATAPTPQNATQRWRLSVGTGSLEAARGSVHVSVNGRRISGEVDVHGRTFNSRTVASGIANRSNWSGVS 480
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BLAST of mRNA_M-pyrifera_M_contig112420.2597.1 vs. uniprot
Match: A0A543PJE2_9ACTN (Serine protease AprX n=2 Tax=Blastococcus colisei TaxID=1564162 RepID=A0A543PJE2_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 1.950e-5
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 MVDVEAALTTPVPANATQTWERSVGTGTLDGARGTDIVTINGQALIGENTFAG 159
            ++D+ AA+  P P NA Q++ RS G G+LD ARG+ +V ++GQA+ GE   AG
Sbjct:  463 LIDLAAAMNAPTPENAVQSYPRSTGAGSLDAARGSVVVEVDGQAVTGEVDVAG 515
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BLAST of mRNA_M-pyrifera_M_contig112420.2597.1 vs. uniprot
Match: UPI0013DEB1AE (S8 family serine peptidase n=1 Tax=Blastococcus litoris TaxID=2171622 RepID=UPI0013DEB1AE)

HSP 1 Score: 52.0 bits (123), Expect = 6.720e-5
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 MVDVEAALTTPVPANATQTWERSVGTGTLDGARGTDIVTINGQALIGE 144
            ++D+  AL TP P NA QT  RS G G+LD ARG+ +V ++G+A+ GE
Sbjct:  502 LIDLAEALNTPTPVNAVQTHARSTGAGSLDAARGSVVVEVDGEAVTGE 549
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112420.2597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1Q7WE45_9ACTN1.610e-744.93Uncharacterized protein n=1 Tax=Actinobacteria bac... [more]
A0A1Q7AUG0_9ACTN8.450e-744.93Peptidase_S8 domain-containing protein (Fragment) ... [more]
A0A853CHU7_9ACTN1.890e-540.00Serine protease AprX n=1 Tax=Geodermatophilus daqi... [more]
A0A543PJE2_9ACTN1.950e-547.17Serine protease AprX n=2 Tax=Blastococcus colisei ... [more]
UPI0013DEB1AE6.720e-550.00S8 family serine peptidase n=1 Tax=Blastococcus li... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112420contigM-pyrifera_M_contig112420:17..583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.2359238-CDS-M-pyrifera_M_contig112420:16..2791622815638.2359238-CDS-M-pyrifera_M_contig112420:16..279Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112420 17..279 +
1692277499.5191572-CDS-M-pyrifera_M_contig112420:16..2791692277499.5191572-CDS-M-pyrifera_M_contig112420:16..279Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112420 17..279 +
1622815638.2498875-CDS-M-pyrifera_M_contig112420:402..5831622815638.2498875-CDS-M-pyrifera_M_contig112420:402..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112420 403..583 +
1692277499.5277412-CDS-M-pyrifera_M_contig112420:402..5831692277499.5277412-CDS-M-pyrifera_M_contig112420:402..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112420 403..583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112420.2597.1prot_M-pyrifera_M_contig112420.2597.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112420 17..583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112420.2597.1

>prot_M-pyrifera_M_contig112420.2597.1 ID=prot_M-pyrifera_M_contig112420.2597.1|Name=mRNA_M-pyrifera_M_contig112420.2597.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
MVDVEAALTTPVPANATQTWERSVGTGTLDGARGTDIVTINGQALIGENT
FAGPFDNAGWLAALTTDGTWWETLSINPLLSSSWYDGWTAPSITSWSGSS
WSGSSWSGSSWSGSSWSGSSWSGSSWSGSSWSGSSWSGSSWPGSSWSG
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mRNA from alignment at M-pyrifera_M_contig112420:17..583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112420.2597.1 ID=mRNA_M-pyrifera_M_contig112420.2597.1|Name=mRNA_M-pyrifera_M_contig112420.2597.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=567bp|location=Sequence derived from alignment at M-pyrifera_M_contig112420:17..583+ (Macrocystis pyrifera P11B4 male)
ATGGTCGACGTGGAAGCCGCCCTGACCACTCCGGTCCCGGCGAACGCCAC
ACAGACCTGGGAGCGTTCGGTCGGTACCGGCACCCTCGACGGTGCTCGTG
GCACCGACATCGTCACCATCAACGGTCAGGCGCTGATCGGCGAGAACACC
TTCGCCGGGCCGTTCGACAATGCCGGCTGGCTGGCGGCGCTCACCACCGA
TGGCACCTGGTGGGAGACCCTCTCGATCAATCCGCTCCTGTCATCGTCGT
GGTACGACGGCTGGTGGTCACTCGACATCGCCGTCAACGGCTCGGTCGTC
ACGAACCTCGTCCCCGACACGATCAACACCACCACGACGGTCCTGAAGCG
GACCACGTCACTTCTCCGCCGCTCGCTCTTCTCGAGGACGGCCCCATCGA
TCACGTCGTGGTCGGGCAGCTCCTGGTCGGGCAGCTCCTGGTCGGGAAGC
TCCTGGTCCGGCAGCTCCTGGTCCGGCAGCTCCTGGTCCGGAAGCTCATG
GTCCGGCAGCTCCTGGTCCGGAAGCTCATGGTCCGGAAGCTCATGGCCCG
GAAGCTCATGGTCCGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112420:17..583+

>mRNA_M-pyrifera_M_contig112420.2597.1 ID=mRNA_M-pyrifera_M_contig112420.2597.1|Name=mRNA_M-pyrifera_M_contig112420.2597.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig112420:17..583+ (Macrocystis pyrifera P11B4 male)
ATGGTCGACGTGGAAGCCGCCCTGACCACTCCGGTCCCGGCGAACGCCAC
ACAGACCTGGGAGCGTTCGGTCGGTACCGGCACCCTCGACGGTGCTCGTG
GCACCGACATCGTCACCATCAACGGTCAGGCGCTGATCGGCGAGAACACC
TTCGCCGGGCCGTTCGACAATGCCGGCTGGCTGGCGGCGCTCACCACCGA
TGGCACCTGGTGGGAGACCCTCTCGATCAATCCGCTCCTGTCATCGTCGT
GGTACGACGGCTGATGGTCGACGTGGAAGCCGCCCTGACCACTCCGGTCC
CGGCGAACGCCACACAGACCTGGGAGCGTTCGGTCGGTACCGGCACCCTC
GACGGTGCTCGTGGCACCGACATCGTCACCATCAACGGTCAGGCGCTGAT
CGGCGAGAACACCTTCGCCGGGCCGTTCGACAATGCCGGCTGGCTGGCGG
CGCTCACCACCGATGGCACCTGGTGGGAGACCCTCTCGATCAATCCGCTC
CTGTCATCGTCGTGGTACGACGGCTGGACGGCCCCATCGATCACGTCGTG
GTCGGGCAGCTCCTGGTCGGGCAGCTCCTGGTCGGGAAGCTCCTGGTCCG
GCAGCTCCTGGTCCGGCAGCTCCTGGTCCGGAAGCTCATGGTCCGGCAGC
TCCTGGTCCGGAAGCTCATGGTCCGGAAGCTCATGGCCCGGAAGCTCATG
GTCCGGAGACGGCCCCATCGATCACGTCGTGGTCGGGCAGCTCCTGGTCG
GGCAGCTCCTGGTCGGGAAGCTCCTGGTCCGGCAGCTCCTGGTCCGGCAG
CTCCTGGTCCGGAAGCTCATGGTCCGGCAGCTCCTGGTCCGGAAGCTCAT
GGTCCGGAAGCTCATGGCCCGGAAGCTCATGGTCCGGA
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